Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0023052: signaling0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:1901799: negative regulation of proteasomal protein catabolic process0.00E+00
5GO:0006489: dolichyl diphosphate biosynthetic process0.00E+00
6GO:0006592: ornithine biosynthetic process0.00E+00
7GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
8GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
9GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
10GO:0046487: glyoxylate metabolic process0.00E+00
11GO:0015746: citrate transport0.00E+00
12GO:0006412: translation3.49E-33
13GO:0006511: ubiquitin-dependent protein catabolic process1.19E-27
14GO:0042254: ribosome biogenesis2.60E-12
15GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.61E-09
16GO:0051603: proteolysis involved in cellular protein catabolic process4.23E-09
17GO:0000028: ribosomal small subunit assembly3.83E-07
18GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly6.00E-06
19GO:0000027: ribosomal large subunit assembly1.62E-05
20GO:1902626: assembly of large subunit precursor of preribosome3.33E-05
21GO:0006165: nucleoside diphosphate phosphorylation7.17E-05
22GO:0006228: UTP biosynthetic process7.17E-05
23GO:0006241: CTP biosynthetic process7.17E-05
24GO:0015986: ATP synthesis coupled proton transport7.59E-05
25GO:0006183: GTP biosynthetic process1.25E-04
26GO:0030163: protein catabolic process1.25E-04
27GO:0043248: proteasome assembly2.73E-04
28GO:0006487: protein N-linked glycosylation2.80E-04
29GO:0046686: response to cadmium ion3.35E-04
30GO:0010043: response to zinc ion3.80E-04
31GO:0030433: ubiquitin-dependent ERAD pathway4.10E-04
32GO:0009793: embryo development ending in seed dormancy4.21E-04
33GO:0031468: nuclear envelope reassembly4.70E-04
34GO:0010265: SCF complex assembly4.70E-04
35GO:0015798: myo-inositol transport4.70E-04
36GO:2001006: regulation of cellulose biosynthetic process4.70E-04
37GO:0009240: isopentenyl diphosphate biosynthetic process4.70E-04
38GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.70E-04
39GO:0009852: auxin catabolic process4.70E-04
40GO:0032365: intracellular lipid transport4.70E-04
41GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.70E-04
42GO:0006407: rRNA export from nucleus4.70E-04
43GO:0009060: aerobic respiration8.55E-04
44GO:0098656: anion transmembrane transport8.55E-04
45GO:0009245: lipid A biosynthetic process8.55E-04
46GO:0015786: UDP-glucose transport1.01E-03
47GO:0051788: response to misfolded protein1.01E-03
48GO:0006432: phenylalanyl-tRNA aminoacylation1.01E-03
49GO:0045905: positive regulation of translational termination1.01E-03
50GO:0071668: plant-type cell wall assembly1.01E-03
51GO:0050992: dimethylallyl diphosphate biosynthetic process1.01E-03
52GO:0045901: positive regulation of translational elongation1.01E-03
53GO:0006452: translational frameshifting1.01E-03
54GO:0016560: protein import into peroxisome matrix, docking1.01E-03
55GO:0009735: response to cytokinin1.23E-03
56GO:0006820: anion transport1.55E-03
57GO:0046168: glycerol-3-phosphate catabolic process1.65E-03
58GO:0010498: proteasomal protein catabolic process1.65E-03
59GO:0080121: AMP transport1.65E-03
60GO:0045793: positive regulation of cell size1.65E-03
61GO:0006760: folic acid-containing compound metabolic process1.65E-03
62GO:0015783: GDP-fucose transport1.65E-03
63GO:0042256: mature ribosome assembly1.65E-03
64GO:0007030: Golgi organization2.22E-03
65GO:0010255: glucose mediated signaling pathway2.39E-03
66GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.39E-03
67GO:0006168: adenine salvage2.39E-03
68GO:0001676: long-chain fatty acid metabolic process2.39E-03
69GO:0032877: positive regulation of DNA endoreduplication2.39E-03
70GO:0046836: glycolipid transport2.39E-03
71GO:0051259: protein oligomerization2.39E-03
72GO:0006166: purine ribonucleoside salvage2.39E-03
73GO:0070301: cellular response to hydrogen peroxide2.39E-03
74GO:0006107: oxaloacetate metabolic process2.39E-03
75GO:0009647: skotomorphogenesis2.39E-03
76GO:0072334: UDP-galactose transmembrane transport2.39E-03
77GO:0006072: glycerol-3-phosphate metabolic process2.39E-03
78GO:0009853: photorespiration2.73E-03
79GO:0006221: pyrimidine nucleotide biosynthetic process3.22E-03
80GO:0006625: protein targeting to peroxisome3.22E-03
81GO:0044205: 'de novo' UMP biosynthetic process3.22E-03
82GO:0015867: ATP transport3.22E-03
83GO:0032366: intracellular sterol transport3.22E-03
84GO:0051781: positive regulation of cell division3.22E-03
85GO:0010387: COP9 signalosome assembly3.22E-03
86GO:0010363: regulation of plant-type hypersensitive response3.22E-03
87GO:0009651: response to salt stress3.31E-03
88GO:0061077: chaperone-mediated protein folding3.34E-03
89GO:0016226: iron-sulfur cluster assembly3.66E-03
90GO:0036065: fucosylation4.13E-03
91GO:0097428: protein maturation by iron-sulfur cluster transfer4.13E-03
92GO:1902183: regulation of shoot apical meristem development4.13E-03
93GO:0044209: AMP salvage4.13E-03
94GO:0009697: salicylic acid biosynthetic process4.13E-03
95GO:0000413: protein peptidyl-prolyl isomerization5.09E-03
96GO:0015991: ATP hydrolysis coupled proton transport5.09E-03
97GO:0042176: regulation of protein catabolic process5.11E-03
98GO:0015866: ADP transport5.11E-03
99GO:0006662: glycerol ether metabolic process5.49E-03
100GO:0006120: mitochondrial electron transport, NADH to ubiquinone6.17E-03
101GO:0000054: ribosomal subunit export from nucleus6.17E-03
102GO:0009554: megasporogenesis6.17E-03
103GO:1901001: negative regulation of response to salt stress6.17E-03
104GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.30E-03
105GO:0010044: response to aluminum ion7.30E-03
106GO:0032880: regulation of protein localization7.30E-03
107GO:0048528: post-embryonic root development7.30E-03
108GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.30E-03
109GO:0000338: protein deneddylation7.30E-03
110GO:0009690: cytokinin metabolic process8.49E-03
111GO:0006506: GPI anchor biosynthetic process8.49E-03
112GO:0031540: regulation of anthocyanin biosynthetic process8.49E-03
113GO:0010286: heat acclimation8.76E-03
114GO:0006526: arginine biosynthetic process9.75E-03
115GO:0009808: lignin metabolic process9.75E-03
116GO:0022900: electron transport chain9.75E-03
117GO:0000398: mRNA splicing, via spliceosome1.04E-02
118GO:0006754: ATP biosynthetic process1.11E-02
119GO:0048589: developmental growth1.11E-02
120GO:0015780: nucleotide-sugar transport1.11E-02
121GO:0046685: response to arsenic-containing substance1.11E-02
122GO:0000387: spliceosomal snRNP assembly1.25E-02
123GO:0010449: root meristem growth1.25E-02
124GO:0009832: plant-type cell wall biogenesis1.36E-02
125GO:0000103: sulfate assimilation1.39E-02
126GO:0043069: negative regulation of programmed cell death1.39E-02
127GO:0045454: cell redox homeostasis1.44E-02
128GO:0052544: defense response by callose deposition in cell wall1.54E-02
129GO:0048229: gametophyte development1.54E-02
130GO:0010015: root morphogenesis1.54E-02
131GO:0016925: protein sumoylation1.70E-02
132GO:0071365: cellular response to auxin stimulus1.70E-02
133GO:0034599: cellular response to oxidative stress1.71E-02
134GO:0006099: tricarboxylic acid cycle1.71E-02
135GO:0006626: protein targeting to mitochondrion1.86E-02
136GO:0010102: lateral root morphogenesis1.86E-02
137GO:0006108: malate metabolic process1.86E-02
138GO:0006006: glucose metabolic process1.86E-02
139GO:0006807: nitrogen compound metabolic process1.86E-02
140GO:0006631: fatty acid metabolic process1.95E-02
141GO:0002237: response to molecule of bacterial origin2.03E-02
142GO:0048467: gynoecium development2.03E-02
143GO:0008283: cell proliferation2.12E-02
144GO:0000209: protein polyubiquitination2.20E-02
145GO:0009969: xyloglucan biosynthetic process2.20E-02
146GO:0007031: peroxisome organization2.20E-02
147GO:0019853: L-ascorbic acid biosynthetic process2.20E-02
148GO:0009965: leaf morphogenesis2.38E-02
149GO:0006457: protein folding2.39E-02
150GO:0006406: mRNA export from nucleus2.56E-02
151GO:0006289: nucleotide-excision repair2.56E-02
152GO:0009116: nucleoside metabolic process2.56E-02
153GO:0008299: isoprenoid biosynthetic process2.74E-02
154GO:0006486: protein glycosylation2.86E-02
155GO:0015992: proton transport2.94E-02
156GO:0010431: seed maturation2.94E-02
157GO:0006414: translational elongation3.03E-02
158GO:0035428: hexose transmembrane transport3.13E-02
159GO:0007005: mitochondrion organization3.13E-02
160GO:0006012: galactose metabolic process3.33E-02
161GO:0009409: response to cold3.39E-02
162GO:0010089: xylem development3.54E-02
163GO:0010584: pollen exine formation3.54E-02
164GO:0009553: embryo sac development3.94E-02
165GO:0034220: ion transmembrane transport3.96E-02
166GO:0010051: xylem and phloem pattern formation3.96E-02
167GO:0006606: protein import into nucleus3.96E-02
168GO:0046323: glucose import4.17E-02
169GO:0008360: regulation of cell shape4.17E-02
170GO:0018105: peptidyl-serine phosphorylation4.18E-02
171GO:0051726: regulation of cell cycle4.30E-02
172GO:0061025: membrane fusion4.39E-02
173GO:0048825: cotyledon development4.62E-02
174GO:0009556: microsporogenesis4.62E-02
175GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.85E-02
176GO:0010193: response to ozone4.85E-02
177GO:0006635: fatty acid beta-oxidation4.85E-02
178GO:0042742: defense response to bacterium4.99E-02
RankGO TermAdjusted P value
1GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
2GO:0004151: dihydroorotase activity0.00E+00
3GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
4GO:0008777: acetylornithine deacetylase activity0.00E+00
5GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
7GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
8GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
9GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
10GO:0050152: omega-amidase activity0.00E+00
11GO:0003735: structural constituent of ribosome1.01E-46
12GO:0004298: threonine-type endopeptidase activity1.27E-42
13GO:0008233: peptidase activity5.03E-21
14GO:0003729: mRNA binding3.15E-10
15GO:0036402: proteasome-activating ATPase activity6.00E-06
16GO:0050897: cobalt ion binding4.15E-05
17GO:0004550: nucleoside diphosphate kinase activity7.17E-05
18GO:0004576: oligosaccharyl transferase activity1.25E-04
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.25E-04
20GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.92E-04
21GO:0017025: TBP-class protein binding2.07E-04
22GO:0031177: phosphopantetheine binding2.73E-04
23GO:0043130: ubiquitin binding2.80E-04
24GO:0000035: acyl binding3.65E-04
25GO:0030544: Hsp70 protein binding4.70E-04
26GO:0035614: snRNA stem-loop binding4.70E-04
27GO:0080048: GDP-D-glucose phosphorylase activity4.70E-04
28GO:0015137: citrate transmembrane transporter activity4.70E-04
29GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity4.70E-04
30GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity4.70E-04
31GO:0080047: GDP-L-galactose phosphorylase activity4.70E-04
32GO:0004452: isopentenyl-diphosphate delta-isomerase activity4.70E-04
33GO:0015288: porin activity5.86E-04
34GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.86E-04
35GO:0046933: proton-transporting ATP synthase activity, rotational mechanism6.93E-04
36GO:0008308: voltage-gated anion channel activity7.14E-04
37GO:0008137: NADH dehydrogenase (ubiquinone) activity9.05E-04
38GO:0032934: sterol binding1.01E-03
39GO:0004826: phenylalanine-tRNA ligase activity1.01E-03
40GO:0005366: myo-inositol:proton symporter activity1.01E-03
41GO:0030619: U1 snRNA binding1.01E-03
42GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity1.01E-03
43GO:1990585: hydroxyproline O-arabinosyltransferase activity1.01E-03
44GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.06E-03
45GO:0046961: proton-transporting ATPase activity, rotational mechanism1.35E-03
46GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.65E-03
47GO:0005457: GDP-fucose transmembrane transporter activity1.65E-03
48GO:0070180: large ribosomal subunit rRNA binding1.65E-03
49GO:0005047: signal recognition particle binding1.65E-03
50GO:0004175: endopeptidase activity1.98E-03
51GO:0005460: UDP-glucose transmembrane transporter activity2.39E-03
52GO:0008097: 5S rRNA binding2.39E-03
53GO:0017089: glycolipid transporter activity2.39E-03
54GO:0003999: adenine phosphoribosyltransferase activity2.39E-03
55GO:0019843: rRNA binding2.48E-03
56GO:0005528: FK506 binding2.75E-03
57GO:0050302: indole-3-acetaldehyde oxidase activity3.22E-03
58GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor3.22E-03
59GO:0010011: auxin binding3.22E-03
60GO:0051861: glycolipid binding3.22E-03
61GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.22E-03
62GO:0070628: proteasome binding3.22E-03
63GO:0004540: ribonuclease activity3.34E-03
64GO:0008198: ferrous iron binding4.13E-03
65GO:0080122: AMP transmembrane transporter activity4.13E-03
66GO:0005496: steroid binding4.13E-03
67GO:0031386: protein tag4.13E-03
68GO:0005459: UDP-galactose transmembrane transporter activity4.13E-03
69GO:0047134: protein-disulfide reductase activity4.71E-03
70GO:0051117: ATPase binding5.11E-03
71GO:0080046: quercetin 4'-O-glucosyltransferase activity5.11E-03
72GO:0031593: polyubiquitin binding5.11E-03
73GO:0004791: thioredoxin-disulfide reductase activity5.91E-03
74GO:0102391: decanoate--CoA ligase activity6.17E-03
75GO:0004602: glutathione peroxidase activity6.17E-03
76GO:0005347: ATP transmembrane transporter activity6.17E-03
77GO:0015217: ADP transmembrane transporter activity6.17E-03
78GO:0008143: poly(A) binding7.30E-03
79GO:0008320: protein transmembrane transporter activity7.30E-03
80GO:0005085: guanyl-nucleotide exchange factor activity7.30E-03
81GO:0004467: long-chain fatty acid-CoA ligase activity7.30E-03
82GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity7.30E-03
83GO:0005338: nucleotide-sugar transmembrane transporter activity7.30E-03
84GO:0042162: telomeric DNA binding7.30E-03
85GO:0008121: ubiquinol-cytochrome-c reductase activity7.30E-03
86GO:0043022: ribosome binding8.49E-03
87GO:0035064: methylated histone binding8.49E-03
88GO:0004034: aldose 1-epimerase activity8.49E-03
89GO:0015035: protein disulfide oxidoreductase activity9.03E-03
90GO:0008417: fucosyltransferase activity1.11E-02
91GO:0016887: ATPase activity1.22E-02
92GO:0030234: enzyme regulator activity1.39E-02
93GO:0004129: cytochrome-c oxidase activity1.54E-02
94GO:0008794: arsenate reductase (glutaredoxin) activity1.54E-02
95GO:0003746: translation elongation factor activity1.64E-02
96GO:0000049: tRNA binding1.70E-02
97GO:0008266: poly(U) RNA binding2.03E-02
98GO:0051537: 2 iron, 2 sulfur cluster binding2.29E-02
99GO:0003714: transcription corepressor activity2.56E-02
100GO:0031625: ubiquitin protein ligase binding3.16E-02
101GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.49E-02
102GO:0008514: organic anion transmembrane transporter activity3.54E-02
103GO:0005102: receptor binding3.74E-02
104GO:0005355: glucose transmembrane transporter activity4.39E-02
105GO:0004872: receptor activity4.62E-02
RankGO TermAdjusted P value
1GO:0019774: proteasome core complex, beta-subunit complex0.00E+00
2GO:0097361: CIA complex0.00E+00
3GO:0000502: proteasome complex1.47E-52
4GO:0022626: cytosolic ribosome2.53E-43
5GO:0005839: proteasome core complex1.27E-42
6GO:0005840: ribosome1.87E-36
7GO:0022625: cytosolic large ribosomal subunit1.09E-32
8GO:0005829: cytosol6.06E-32
9GO:0019773: proteasome core complex, alpha-subunit complex4.72E-21
10GO:0005737: cytoplasm1.47E-19
11GO:0005774: vacuolar membrane1.05E-14
12GO:0005730: nucleolus1.99E-14
13GO:0022627: cytosolic small ribosomal subunit3.81E-14
14GO:0005753: mitochondrial proton-transporting ATP synthase complex4.83E-09
15GO:0005773: vacuole1.09E-08
16GO:0005747: mitochondrial respiratory chain complex I1.69E-07
17GO:0031595: nuclear proteasome complex2.13E-07
18GO:0016020: membrane5.24E-07
19GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.42E-06
20GO:0008540: proteasome regulatory particle, base subcomplex1.55E-06
21GO:0008541: proteasome regulatory particle, lid subcomplex3.21E-06
22GO:0009506: plasmodesma6.26E-06
23GO:0031597: cytosolic proteasome complex1.03E-05
24GO:0015934: large ribosomal subunit4.15E-05
25GO:0008250: oligosaccharyltransferase complex1.92E-04
26GO:0045271: respiratory chain complex I3.20E-04
27GO:0015935: small ribosomal subunit3.64E-04
28GO:0005732: small nucleolar ribonucleoprotein complex3.98E-04
29GO:0005886: plasma membrane4.28E-04
30GO:0030686: 90S preribosome4.70E-04
31GO:1990429: peroxisomal importomer complex4.70E-04
32GO:0045273: respiratory chain complex II5.86E-04
33GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)5.86E-04
34GO:0046930: pore complex7.14E-04
35GO:0005618: cell wall9.62E-04
36GO:0005697: telomerase holoenzyme complex1.01E-03
37GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain1.01E-03
38GO:0005783: endoplasmic reticulum1.27E-03
39GO:0005788: endoplasmic reticulum lumen1.54E-03
40GO:0005838: proteasome regulatory particle1.65E-03
41GO:0005853: eukaryotic translation elongation factor 1 complex1.65E-03
42GO:0046861: glyoxysomal membrane1.65E-03
43GO:0009331: glycerol-3-phosphate dehydrogenase complex2.39E-03
44GO:0033180: proton-transporting V-type ATPase, V1 domain2.39E-03
45GO:1990726: Lsm1-7-Pat1 complex2.39E-03
46GO:0005758: mitochondrial intermembrane space2.75E-03
47GO:0070469: respiratory chain3.04E-03
48GO:0005741: mitochondrial outer membrane3.34E-03
49GO:0005746: mitochondrial respiratory chain4.13E-03
50GO:0031966: mitochondrial membrane5.06E-03
51GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)5.11E-03
52GO:0005801: cis-Golgi network6.17E-03
53GO:0005777: peroxisome6.42E-03
54GO:0009507: chloroplast7.03E-03
55GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane7.30E-03
56GO:0032580: Golgi cisterna membrane8.24E-03
57GO:0005688: U6 snRNP8.49E-03
58GO:0009514: glyoxysome9.75E-03
59GO:0046540: U4/U6 x U5 tri-snRNP complex9.75E-03
60GO:0009536: plastid1.08E-02
61GO:0005685: U1 snRNP1.11E-02
62GO:0005763: mitochondrial small ribosomal subunit1.11E-02
63GO:0008180: COP9 signalosome1.11E-02
64GO:0071011: precatalytic spliceosome1.25E-02
65GO:0071013: catalytic step 2 spliceosome1.54E-02
66GO:0005759: mitochondrial matrix1.55E-02
67GO:0009508: plastid chromosome1.86E-02
68GO:0019013: viral nucleocapsid1.86E-02
69GO:0005750: mitochondrial respiratory chain complex III2.03E-02
70GO:0005769: early endosome2.38E-02
71GO:0005681: spliceosomal complex3.38E-02
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Gene type



Gene DE type