Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015717: triose phosphate transport0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:0000023: maltose metabolic process0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0019323: pentose catabolic process0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0090627: plant epidermal cell differentiation0.00E+00
12GO:0009735: response to cytokinin7.12E-13
13GO:0032544: plastid translation1.16E-11
14GO:0015979: photosynthesis1.82E-11
15GO:0006412: translation6.18E-10
16GO:0042254: ribosome biogenesis1.34E-08
17GO:0009773: photosynthetic electron transport in photosystem I1.57E-08
18GO:0009409: response to cold1.45E-07
19GO:0010027: thylakoid membrane organization1.73E-07
20GO:0019464: glycine decarboxylation via glycine cleavage system6.04E-07
21GO:0030388: fructose 1,6-bisphosphate metabolic process5.29E-06
22GO:0005978: glycogen biosynthetic process1.09E-05
23GO:0006000: fructose metabolic process1.87E-05
24GO:0010206: photosystem II repair2.17E-05
25GO:0019252: starch biosynthetic process3.54E-05
26GO:0005983: starch catabolic process5.98E-05
27GO:0010021: amylopectin biosynthetic process7.33E-05
28GO:0010600: regulation of auxin biosynthetic process7.33E-05
29GO:0010304: PSII associated light-harvesting complex II catabolic process1.66E-04
30GO:0009768: photosynthesis, light harvesting in photosystem I1.68E-04
31GO:0042742: defense response to bacterium2.23E-04
32GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.25E-04
33GO:0009645: response to low light intensity stimulus2.93E-04
34GO:0010196: nonphotochemical quenching2.93E-04
35GO:0044262: cellular carbohydrate metabolic process3.42E-04
36GO:0080093: regulation of photorespiration3.42E-04
37GO:0031998: regulation of fatty acid beta-oxidation3.42E-04
38GO:0006431: methionyl-tRNA aminoacylation3.42E-04
39GO:0000025: maltose catabolic process3.42E-04
40GO:0043489: RNA stabilization3.42E-04
41GO:0010928: regulation of auxin mediated signaling pathway3.67E-04
42GO:0006002: fructose 6-phosphate metabolic process4.51E-04
43GO:0010205: photoinhibition6.39E-04
44GO:0007154: cell communication7.45E-04
45GO:0018026: peptidyl-lysine monomethylation7.45E-04
46GO:0010270: photosystem II oxygen evolving complex assembly7.45E-04
47GO:0009629: response to gravity7.45E-04
48GO:0005976: polysaccharide metabolic process7.45E-04
49GO:1904961: quiescent center organization7.45E-04
50GO:0009658: chloroplast organization8.48E-04
51GO:0015995: chlorophyll biosynthetic process9.77E-04
52GO:0018298: protein-chromophore linkage1.11E-03
53GO:0006094: gluconeogenesis1.11E-03
54GO:0005986: sucrose biosynthetic process1.11E-03
55GO:0009817: defense response to fungus, incompatible interaction1.11E-03
56GO:0010581: regulation of starch biosynthetic process1.21E-03
57GO:0080055: low-affinity nitrate transport1.21E-03
58GO:0035436: triose phosphate transmembrane transport1.21E-03
59GO:0016050: vesicle organization1.21E-03
60GO:0048281: inflorescence morphogenesis1.21E-03
61GO:0071367: cellular response to brassinosteroid stimulus1.21E-03
62GO:0006518: peptide metabolic process1.21E-03
63GO:0019253: reductive pentose-phosphate cycle1.25E-03
64GO:0010025: wax biosynthetic process1.55E-03
65GO:0045454: cell redox homeostasis1.69E-03
66GO:0006289: nucleotide-excision repair1.72E-03
67GO:0006165: nucleoside diphosphate phosphorylation1.74E-03
68GO:0006228: UTP biosynthetic process1.74E-03
69GO:0010148: transpiration1.74E-03
70GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.74E-03
71GO:0051085: chaperone mediated protein folding requiring cofactor1.74E-03
72GO:0006241: CTP biosynthetic process1.74E-03
73GO:0009052: pentose-phosphate shunt, non-oxidative branch1.74E-03
74GO:0010731: protein glutathionylation1.74E-03
75GO:0006424: glutamyl-tRNA aminoacylation1.74E-03
76GO:0006418: tRNA aminoacylation for protein translation1.90E-03
77GO:0046686: response to cadmium ion2.23E-03
78GO:0035428: hexose transmembrane transport2.28E-03
79GO:0030245: cellulose catabolic process2.28E-03
80GO:0010017: red or far-red light signaling pathway2.28E-03
81GO:0009644: response to high light intensity2.28E-03
82GO:0015713: phosphoglycerate transport2.33E-03
83GO:0010037: response to carbon dioxide2.33E-03
84GO:0006808: regulation of nitrogen utilization2.33E-03
85GO:0015976: carbon utilization2.33E-03
86GO:0010023: proanthocyanidin biosynthetic process2.33E-03
87GO:0009765: photosynthesis, light harvesting2.33E-03
88GO:0006183: GTP biosynthetic process2.33E-03
89GO:0045727: positive regulation of translation2.33E-03
90GO:2000122: negative regulation of stomatal complex development2.33E-03
91GO:0006546: glycine catabolic process2.33E-03
92GO:0006284: base-excision repair2.71E-03
93GO:0032543: mitochondrial translation2.98E-03
94GO:0006544: glycine metabolic process2.98E-03
95GO:0006097: glyoxylate cycle2.98E-03
96GO:0006461: protein complex assembly2.98E-03
97GO:0009435: NAD biosynthetic process2.98E-03
98GO:0009585: red, far-red light phototransduction3.02E-03
99GO:0055114: oxidation-reduction process3.04E-03
100GO:0046323: glucose import3.41E-03
101GO:0009643: photosynthetic acclimation3.68E-03
102GO:0006563: L-serine metabolic process3.68E-03
103GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.68E-03
104GO:0000470: maturation of LSU-rRNA3.68E-03
105GO:0009913: epidermal cell differentiation3.68E-03
106GO:0010190: cytochrome b6f complex assembly3.68E-03
107GO:0006828: manganese ion transport3.68E-03
108GO:1901259: chloroplast rRNA processing4.43E-03
109GO:0009955: adaxial/abaxial pattern specification4.43E-03
110GO:0042026: protein refolding4.43E-03
111GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.43E-03
112GO:0030163: protein catabolic process4.80E-03
113GO:0010103: stomatal complex morphogenesis5.23E-03
114GO:0010161: red light signaling pathway5.23E-03
115GO:0070370: cellular heat acclimation5.23E-03
116GO:0009704: de-etiolation6.08E-03
117GO:0048564: photosystem I assembly6.08E-03
118GO:0030091: protein repair6.08E-03
119GO:0009657: plastid organization6.98E-03
120GO:0017004: cytochrome complex assembly6.98E-03
121GO:0015996: chlorophyll catabolic process6.98E-03
122GO:0001558: regulation of cell growth6.98E-03
123GO:0019430: removal of superoxide radicals6.98E-03
124GO:0006783: heme biosynthetic process7.91E-03
125GO:0048481: plant ovule development7.97E-03
126GO:0010218: response to far red light8.79E-03
127GO:0005982: starch metabolic process8.89E-03
128GO:0035999: tetrahydrofolate interconversion8.89E-03
129GO:0042761: very long-chain fatty acid biosynthetic process8.89E-03
130GO:0010380: regulation of chlorophyll biosynthetic process8.89E-03
131GO:0007623: circadian rhythm9.50E-03
132GO:0031627: telomeric loop formation9.92E-03
133GO:0006782: protoporphyrinogen IX biosynthetic process9.92E-03
134GO:0009637: response to blue light1.01E-02
135GO:0009853: photorespiration1.01E-02
136GO:0006415: translational termination1.10E-02
137GO:0009750: response to fructose1.10E-02
138GO:0018119: peptidyl-cysteine S-nitrosylation1.10E-02
139GO:0016485: protein processing1.10E-02
140GO:0006816: calcium ion transport1.10E-02
141GO:0072593: reactive oxygen species metabolic process1.10E-02
142GO:0043085: positive regulation of catalytic activity1.10E-02
143GO:0045037: protein import into chloroplast stroma1.21E-02
144GO:0010114: response to red light1.31E-02
145GO:0010102: lateral root morphogenesis1.32E-02
146GO:0006108: malate metabolic process1.32E-02
147GO:0006807: nitrogen compound metabolic process1.32E-02
148GO:0009718: anthocyanin-containing compound biosynthetic process1.32E-02
149GO:0009767: photosynthetic electron transport chain1.32E-02
150GO:0009266: response to temperature stimulus1.44E-02
151GO:0010207: photosystem II assembly1.44E-02
152GO:0010020: chloroplast fission1.44E-02
153GO:0005985: sucrose metabolic process1.56E-02
154GO:0006810: transport1.60E-02
155GO:0006636: unsaturated fatty acid biosynthetic process1.69E-02
156GO:0009944: polarity specification of adaxial/abaxial axis1.82E-02
157GO:0000027: ribosomal large subunit assembly1.82E-02
158GO:0007017: microtubule-based process1.95E-02
159GO:0051302: regulation of cell division1.95E-02
160GO:0016114: terpenoid biosynthetic process2.08E-02
161GO:0007005: mitochondrion organization2.22E-02
162GO:0006979: response to oxidative stress2.29E-02
163GO:0009686: gibberellin biosynthetic process2.37E-02
164GO:0009411: response to UV2.37E-02
165GO:0001944: vasculature development2.37E-02
166GO:0009693: ethylene biosynthetic process2.37E-02
167GO:0009306: protein secretion2.51E-02
168GO:0009624: response to nematode2.52E-02
169GO:0006508: proteolysis2.69E-02
170GO:0042335: cuticle development2.81E-02
171GO:0015986: ATP synthesis coupled proton transport3.12E-02
172GO:0048825: cotyledon development3.28E-02
173GO:0000302: response to reactive oxygen species3.44E-02
174GO:0006281: DNA repair3.54E-02
175GO:0042744: hydrogen peroxide catabolic process3.58E-02
176GO:0009790: embryo development3.68E-02
177GO:0006310: DNA recombination3.95E-02
178GO:0008152: metabolic process3.99E-02
179GO:0009627: systemic acquired resistance4.84E-02
RankGO TermAdjusted P value
1GO:0004822: isoleucine-tRNA ligase activity0.00E+00
2GO:0009899: ent-kaurene synthase activity0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0051738: xanthophyll binding0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0005363: maltose transmembrane transporter activity0.00E+00
7GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0019843: rRNA binding1.13E-17
11GO:0003735: structural constituent of ribosome7.14E-13
12GO:0008266: poly(U) RNA binding2.83E-06
13GO:0051920: peroxiredoxin activity4.54E-06
14GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.29E-06
15GO:0016209: antioxidant activity1.09E-05
16GO:0004375: glycine dehydrogenase (decarboxylating) activity4.12E-05
17GO:0008878: glucose-1-phosphate adenylyltransferase activity7.33E-05
18GO:0016168: chlorophyll binding9.16E-05
19GO:0031409: pigment binding1.24E-04
20GO:0004222: metalloendopeptidase activity1.60E-04
21GO:0034256: chlorophyll(ide) b reductase activity3.42E-04
22GO:0004853: uroporphyrinogen decarboxylase activity3.42E-04
23GO:0045485: omega-6 fatty acid desaturase activity3.42E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.42E-04
25GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.42E-04
26GO:0004825: methionine-tRNA ligase activity3.42E-04
27GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.42E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.42E-04
29GO:0004856: xylulokinase activity3.42E-04
30GO:0009496: plastoquinol--plastocyanin reductase activity3.42E-04
31GO:0004134: 4-alpha-glucanotransferase activity3.42E-04
32GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.42E-04
33GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.42E-04
34GO:0016491: oxidoreductase activity4.83E-04
35GO:0008967: phosphoglycolate phosphatase activity7.45E-04
36GO:0004618: phosphoglycerate kinase activity7.45E-04
37GO:0010297: heteropolysaccharide binding7.45E-04
38GO:0033201: alpha-1,4-glucan synthase activity7.45E-04
39GO:0004750: ribulose-phosphate 3-epimerase activity7.45E-04
40GO:0018708: thiol S-methyltransferase activity7.45E-04
41GO:0003844: 1,4-alpha-glucan branching enzyme activity7.45E-04
42GO:0004148: dihydrolipoyl dehydrogenase activity1.21E-03
43GO:0017108: 5'-flap endonuclease activity1.21E-03
44GO:0045174: glutathione dehydrogenase (ascorbate) activity1.21E-03
45GO:0030267: glyoxylate reductase (NADP) activity1.21E-03
46GO:0071917: triose-phosphate transmembrane transporter activity1.21E-03
47GO:0080054: low-affinity nitrate transmembrane transporter activity1.21E-03
48GO:0004324: ferredoxin-NADP+ reductase activity1.21E-03
49GO:0043169: cation binding1.21E-03
50GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.21E-03
51GO:0004373: glycogen (starch) synthase activity1.21E-03
52GO:0017150: tRNA dihydrouridine synthase activity1.21E-03
53GO:0005504: fatty acid binding1.21E-03
54GO:0002161: aminoacyl-tRNA editing activity1.21E-03
55GO:0005528: FK506 binding1.72E-03
56GO:0016149: translation release factor activity, codon specific1.74E-03
57GO:0016851: magnesium chelatase activity1.74E-03
58GO:0004550: nucleoside diphosphate kinase activity1.74E-03
59GO:0043023: ribosomal large subunit binding1.74E-03
60GO:0019201: nucleotide kinase activity1.74E-03
61GO:0042277: peptide binding2.33E-03
62GO:0015120: phosphoglycerate transmembrane transporter activity2.33E-03
63GO:0016279: protein-lysine N-methyltransferase activity2.33E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.33E-03
65GO:0019104: DNA N-glycosylase activity2.33E-03
66GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.33E-03
67GO:0045430: chalcone isomerase activity2.33E-03
68GO:0009011: starch synthase activity2.33E-03
69GO:0019199: transmembrane receptor protein kinase activity2.33E-03
70GO:0022891: substrate-specific transmembrane transporter activity2.49E-03
71GO:0008810: cellulase activity2.49E-03
72GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.51E-03
73GO:0004812: aminoacyl-tRNA ligase activity2.93E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor2.98E-03
75GO:0008725: DNA-3-methyladenine glycosylase activity2.98E-03
76GO:0004372: glycine hydroxymethyltransferase activity2.98E-03
77GO:0003959: NADPH dehydrogenase activity2.98E-03
78GO:0005355: glucose transmembrane transporter activity3.67E-03
79GO:0050662: coenzyme binding3.67E-03
80GO:0016615: malate dehydrogenase activity3.68E-03
81GO:2001070: starch binding3.68E-03
82GO:0004130: cytochrome-c peroxidase activity3.68E-03
83GO:0004601: peroxidase activity3.81E-03
84GO:0048038: quinone binding4.22E-03
85GO:0030060: L-malate dehydrogenase activity4.43E-03
86GO:0004602: glutathione peroxidase activity4.43E-03
87GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.43E-03
88GO:0004017: adenylate kinase activity4.43E-03
89GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.43E-03
90GO:0008237: metallopeptidase activity5.43E-03
91GO:0004033: aldo-keto reductase (NADP) activity6.08E-03
92GO:0005337: nucleoside transmembrane transporter activity6.08E-03
93GO:0015078: hydrogen ion transmembrane transporter activity6.98E-03
94GO:0004252: serine-type endopeptidase activity7.20E-03
95GO:0008236: serine-type peptidase activity7.57E-03
96GO:0003747: translation release factor activity7.91E-03
97GO:0005384: manganese ion transmembrane transporter activity8.89E-03
98GO:0008047: enzyme activator activity9.92E-03
99GO:0044183: protein binding involved in protein folding1.10E-02
100GO:0003691: double-stranded telomeric DNA binding1.10E-02
101GO:0015386: potassium:proton antiporter activity1.10E-02
102GO:0000049: tRNA binding1.21E-02
103GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.29E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity1.32E-02
105GO:0004089: carbonate dehydratase activity1.32E-02
106GO:0015095: magnesium ion transmembrane transporter activity1.32E-02
107GO:0031072: heat shock protein binding1.32E-02
108GO:0051537: 2 iron, 2 sulfur cluster binding1.41E-02
109GO:0001046: core promoter sequence-specific DNA binding1.82E-02
110GO:0015079: potassium ion transmembrane transporter activity1.95E-02
111GO:0004176: ATP-dependent peptidase activity2.08E-02
112GO:0051082: unfolded protein binding2.52E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.12E-02
114GO:0004518: nuclease activity3.61E-02
115GO:0015144: carbohydrate transmembrane transporter activity3.77E-02
116GO:0000156: phosphorelay response regulator activity3.78E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.78E-02
118GO:0003684: damaged DNA binding3.95E-02
119GO:0005200: structural constituent of cytoskeleton4.12E-02
120GO:0005351: sugar:proton symporter activity4.24E-02
RankGO TermAdjusted P value
1GO:0033557: Slx1-Slx4 complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0042579: microbody0.00E+00
6GO:0009571: proplastid stroma0.00E+00
7GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
8GO:0009507: chloroplast1.66E-81
9GO:0009941: chloroplast envelope8.12E-67
10GO:0009570: chloroplast stroma4.43E-62
11GO:0009534: chloroplast thylakoid4.23E-47
12GO:0009535: chloroplast thylakoid membrane8.64E-44
13GO:0009579: thylakoid3.29E-39
14GO:0010287: plastoglobule2.76E-16
15GO:0005840: ribosome2.67E-13
16GO:0010319: stromule7.22E-11
17GO:0009543: chloroplast thylakoid lumen2.78E-10
18GO:0031977: thylakoid lumen2.27E-09
19GO:0016020: membrane1.18E-08
20GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.51E-07
21GO:0009706: chloroplast inner membrane8.99E-07
22GO:0048046: apoplast1.64E-06
23GO:0009533: chloroplast stromal thylakoid7.28E-06
24GO:0009523: photosystem II3.54E-05
25GO:0005960: glycine cleavage complex4.12E-05
26GO:0009295: nucleoid6.63E-05
27GO:0009508: plastid chromosome7.32E-05
28GO:0030076: light-harvesting complex1.06E-04
29GO:0031969: chloroplast membrane2.70E-04
30GO:0009782: photosystem I antenna complex3.42E-04
31GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.42E-04
32GO:0009501: amyloplast3.67E-04
33GO:0009538: photosystem I reaction center3.67E-04
34GO:0009522: photosystem I4.17E-04
35GO:0030093: chloroplast photosystem I7.45E-04
36GO:0000311: plastid large ribosomal subunit9.79E-04
37GO:0010007: magnesium chelatase complex1.21E-03
38GO:0009536: plastid1.25E-03
39GO:0030095: chloroplast photosystem II1.25E-03
40GO:0015934: large ribosomal subunit1.33E-03
41GO:0009517: PSII associated light-harvesting complex II2.33E-03
42GO:0055035: plastid thylakoid membrane2.98E-03
43GO:0009512: cytochrome b6f complex2.98E-03
44GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.68E-03
45GO:0000783: nuclear telomere cap complex6.98E-03
46GO:0042644: chloroplast nucleoid7.91E-03
47GO:0045298: tubulin complex7.91E-03
48GO:0005763: mitochondrial small ribosomal subunit7.91E-03
49GO:0000312: plastid small ribosomal subunit1.44E-02
50GO:0009654: photosystem II oxygen evolving complex1.95E-02
51GO:0042651: thylakoid membrane1.95E-02
52GO:0015935: small ribosomal subunit2.08E-02
53GO:0022626: cytosolic ribosome2.12E-02
54GO:0022625: cytosolic large ribosomal subunit2.32E-02
55GO:0005623: cell3.24E-02
56GO:0019898: extrinsic component of membrane3.28E-02
57GO:0005759: mitochondrial matrix3.95E-02
58GO:0030529: intracellular ribonucleoprotein complex4.47E-02
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Gene type



Gene DE type