co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0000373: Group II intron splicing	1.88E-05
4	GO:1904966: positive regulation of vitamin E biosynthetic process	3.64E-05
5	GO:1904964: positive regulation of phytol biosynthetic process	3.64E-05
6	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.64E-05
7	GO:0006419: alanyl-tRNA aminoacylation	3.64E-05
8	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.09E-05
9	GO:0090307: mitotic spindle assembly	2.33E-04
10	GO:0042989: sequestering of actin monomers	2.33E-04
11	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	2.33E-04
12	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.33E-04
13	GO:0031122: cytoplasmic microtubule organization	3.14E-04
14	GO:0016120: carotene biosynthetic process	4.01E-04
15	GO:0030041: actin filament polymerization	4.01E-04
16	GO:0016123: xanthophyll biosynthetic process	4.01E-04
17	GO:0009793: embryo development ending in seed dormancy	4.32E-04
18	GO:1901259: chloroplast rRNA processing	5.88E-04
19	GO:0017148: negative regulation of translation	5.88E-04
20	GO:0006400: tRNA modification	6.87E-04
21	GO:0051510: regulation of unidimensional cell growth	6.87E-04
22	GO:0006401: RNA catabolic process	6.87E-04
23	GO:0048564: photosystem I assembly	7.90E-04
24	GO:0006402: mRNA catabolic process	7.90E-04
25	GO:0030091: protein repair	7.90E-04
26	GO:0006364: rRNA processing	8.60E-04
27	GO:0031425: chloroplast RNA processing	1.12E-03
28	GO:0045037: protein import into chloroplast stroma	1.49E-03
29	GO:0090351: seedling development	1.89E-03
30	GO:0007010: cytoskeleton organization	2.18E-03
31	GO:0009658: chloroplast organization	3.13E-03
32	GO:0042254: ribosome biogenesis	3.19E-03
33	GO:0008033: tRNA processing	3.30E-03
34	GO:0006814: sodium ion transport	3.64E-03
35	GO:0002229: defense response to oomycetes	4.00E-03
36	GO:0010193: response to ozone	4.00E-03
37	GO:0016042: lipid catabolic process	5.53E-03
38	GO:0015995: chlorophyll biosynthetic process	5.76E-03
39	GO:0009817: defense response to fungus, incompatible interaction	6.18E-03
40	GO:0018298: protein-chromophore linkage	6.18E-03
41	GO:0048527: lateral root development	6.83E-03
42	GO:0010224: response to UV-B	1.10E-02
43	GO:0048316: seed development	1.23E-02
44	GO:0009845: seed germination	1.70E-02
45	GO:0016036: cellular response to phosphate starvation	1.92E-02
46	GO:0009451: RNA modification	2.06E-02
47	GO:0006810: transport	3.02E-02
48	GO:0005975: carbohydrate metabolic process	3.12E-02
49	GO:0015979: photosynthesis	3.54E-02
50	GO:0006397: mRNA processing	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0004813: alanine-tRNA ligase activity	3.64E-05
2	GO:0047911: galacturan 1,4-alpha-galacturonidase activity	3.64E-05
3	GO:0004654: polyribonucleotide nucleotidyltransferase activity	3.64E-05
4	GO:0003723: RNA binding	2.14E-04
5	GO:0043023: ribosomal large subunit binding	2.33E-04
6	GO:0008508: bile acid:sodium symporter activity	2.33E-04
7	GO:0043015: gamma-tubulin binding	3.14E-04
8	GO:0043495: protein anchor	3.14E-04
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.14E-04
10	GO:0051011: microtubule minus-end binding	4.01E-04
11	GO:0003785: actin monomer binding	4.01E-04
12	GO:0042578: phosphoric ester hydrolase activity	4.92E-04
13	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.88E-04
14	GO:0015631: tubulin binding	5.88E-04
15	GO:0008195: phosphatidate phosphatase activity	5.88E-04
16	GO:0019899: enzyme binding	6.87E-04
17	GO:0000049: tRNA binding	1.49E-03
18	GO:0000175: 3'-5'-exoribonuclease activity	1.62E-03
19	GO:0022891: substrate-specific transmembrane transporter activity	2.80E-03
20	GO:0016788: hydrolase activity, acting on ester bonds	3.19E-03
21	GO:0048038: quinone binding	4.00E-03
22	GO:0052689: carboxylic ester hydrolase activity	4.27E-03
23	GO:0005200: structural constituent of cytoskeleton	4.75E-03
24	GO:0016597: amino acid binding	4.95E-03
25	GO:0016168: chlorophyll binding	5.35E-03
26	GO:0003993: acid phosphatase activity	7.51E-03
27	GO:0004650: polygalacturonase activity	1.29E-02
28	GO:0003779: actin binding	1.34E-02
29	GO:0019843: rRNA binding	1.61E-02
30	GO:0008565: protein transporter activity	1.83E-02
31	GO:0042802: identical protein binding	2.40E-02
32	GO:0003735: structural constituent of ribosome	4.08E-02
33	GO:0009055: electron carrier activity	4.46E-02
34	GO:0004519: endonuclease activity	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.22E-20
2	GO:0009570: chloroplast stroma	2.03E-07
3	GO:0042644: chloroplast nucleoid	1.88E-05
4	GO:0030095: chloroplast photosystem II	5.37E-05
5	GO:0009535: chloroplast thylakoid membrane	6.04E-05
6	GO:0008274: gamma-tubulin ring complex	9.09E-05
7	GO:0009543: chloroplast thylakoid lumen	1.21E-04
8	GO:0042646: plastid nucleoid	2.33E-04
9	GO:0000923: equatorial microtubule organizing center	2.33E-04
10	GO:0031977: thylakoid lumen	5.98E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.01E-03
12	GO:0000922: spindle pole	1.01E-03
13	GO:0009941: chloroplast envelope	1.49E-03
14	GO:0005938: cell cortex	1.62E-03
15	GO:0009508: plastid chromosome	1.62E-03
16	GO:0009654: photosystem II oxygen evolving complex	2.33E-03
17	GO:0042651: thylakoid membrane	2.33E-03
18	GO:0015629: actin cytoskeleton	2.80E-03
19	GO:0009523: photosystem II	3.82E-03
20	GO:0019898: extrinsic component of membrane	3.82E-03
21	GO:0009295: nucleoid	4.75E-03
22	GO:0015934: large ribosomal subunit	6.83E-03
23	GO:0009579: thylakoid	1.21E-02
24	GO:0009706: chloroplast inner membrane	1.37E-02
25	GO:0005623: cell	1.64E-02
26	GO:0005840: ribosome	2.15E-02
27	GO:0005874: microtubule	3.14E-02
28	GO:0043231: intracellular membrane-bounded organelle	4.55E-02