GO Enrichment Analysis of Co-expressed Genes with
AT3G18600
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0006364: rRNA processing | 4.39E-22 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.18E-07 |
| 9 | GO:0010162: seed dormancy process | 4.19E-06 |
| 10 | GO:0009553: embryo sac development | 5.78E-06 |
| 11 | GO:0006412: translation | 6.06E-06 |
| 12 | GO:0042273: ribosomal large subunit biogenesis | 1.51E-05 |
| 13 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.23E-05 |
| 14 | GO:0042254: ribosome biogenesis | 6.71E-05 |
| 15 | GO:0031120: snRNA pseudouridine synthesis | 1.35E-04 |
| 16 | GO:0000469: cleavage involved in rRNA processing | 1.35E-04 |
| 17 | GO:0031118: rRNA pseudouridine synthesis | 1.35E-04 |
| 18 | GO:0035266: meristem growth | 1.35E-04 |
| 19 | GO:0030490: maturation of SSU-rRNA | 1.35E-04 |
| 20 | GO:0000494: box C/D snoRNA 3'-end processing | 1.35E-04 |
| 21 | GO:0043985: histone H4-R3 methylation | 1.35E-04 |
| 22 | GO:1990258: histone glutamine methylation | 1.35E-04 |
| 23 | GO:0080009: mRNA methylation | 3.11E-04 |
| 24 | GO:0045041: protein import into mitochondrial intermembrane space | 3.11E-04 |
| 25 | GO:0034470: ncRNA processing | 3.11E-04 |
| 26 | GO:0048569: post-embryonic animal organ development | 3.11E-04 |
| 27 | GO:0009967: positive regulation of signal transduction | 3.11E-04 |
| 28 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.84E-04 |
| 29 | GO:0045039: protein import into mitochondrial inner membrane | 5.13E-04 |
| 30 | GO:0045604: regulation of epidermal cell differentiation | 5.13E-04 |
| 31 | GO:0051302: regulation of cell division | 5.33E-04 |
| 32 | GO:0007005: mitochondrion organization | 6.38E-04 |
| 33 | GO:0009294: DNA mediated transformation | 6.94E-04 |
| 34 | GO:0007276: gamete generation | 7.34E-04 |
| 35 | GO:0009855: determination of bilateral symmetry | 7.34E-04 |
| 36 | GO:0051131: chaperone-mediated protein complex assembly | 7.34E-04 |
| 37 | GO:0009561: megagametogenesis | 7.52E-04 |
| 38 | GO:0010501: RNA secondary structure unwinding | 8.75E-04 |
| 39 | GO:0000460: maturation of 5.8S rRNA | 9.73E-04 |
| 40 | GO:0006479: protein methylation | 9.73E-04 |
| 41 | GO:1900864: mitochondrial RNA modification | 9.73E-04 |
| 42 | GO:0046345: abscisic acid catabolic process | 9.73E-04 |
| 43 | GO:0042274: ribosomal small subunit biogenesis | 9.73E-04 |
| 44 | GO:0031167: rRNA methylation | 1.23E-03 |
| 45 | GO:0000470: maturation of LSU-rRNA | 1.51E-03 |
| 46 | GO:0016554: cytidine to uridine editing | 1.51E-03 |
| 47 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.51E-03 |
| 48 | GO:0006458: 'de novo' protein folding | 1.81E-03 |
| 49 | GO:0048444: floral organ morphogenesis | 1.81E-03 |
| 50 | GO:0009451: RNA modification | 1.81E-03 |
| 51 | GO:0010077: maintenance of inflorescence meristem identity | 1.81E-03 |
| 52 | GO:0042026: protein refolding | 1.81E-03 |
| 53 | GO:0045995: regulation of embryonic development | 2.12E-03 |
| 54 | GO:0080186: developmental vegetative growth | 2.12E-03 |
| 55 | GO:0000028: ribosomal small subunit assembly | 2.46E-03 |
| 56 | GO:0042255: ribosome assembly | 2.46E-03 |
| 57 | GO:0001558: regulation of cell growth | 2.81E-03 |
| 58 | GO:0001510: RNA methylation | 2.81E-03 |
| 59 | GO:0006261: DNA-dependent DNA replication | 2.81E-03 |
| 60 | GO:2000024: regulation of leaf development | 3.17E-03 |
| 61 | GO:0010449: root meristem growth | 3.55E-03 |
| 62 | GO:1900865: chloroplast RNA modification | 3.55E-03 |
| 63 | GO:0030422: production of siRNA involved in RNA interference | 3.95E-03 |
| 64 | GO:0006259: DNA metabolic process | 3.95E-03 |
| 65 | GO:0010582: floral meristem determinacy | 4.79E-03 |
| 66 | GO:0006626: protein targeting to mitochondrion | 5.22E-03 |
| 67 | GO:2000012: regulation of auxin polar transport | 5.22E-03 |
| 68 | GO:0010030: positive regulation of seed germination | 6.14E-03 |
| 69 | GO:0016569: covalent chromatin modification | 6.23E-03 |
| 70 | GO:0006396: RNA processing | 6.82E-03 |
| 71 | GO:0000027: ribosomal large subunit assembly | 7.11E-03 |
| 72 | GO:0010073: meristem maintenance | 7.62E-03 |
| 73 | GO:0061077: chaperone-mediated protein folding | 8.14E-03 |
| 74 | GO:0071215: cellular response to abscisic acid stimulus | 9.21E-03 |
| 75 | GO:0009790: embryo development | 9.68E-03 |
| 76 | GO:0008033: tRNA processing | 1.09E-02 |
| 77 | GO:0000413: protein peptidyl-prolyl isomerization | 1.09E-02 |
| 78 | GO:0010197: polar nucleus fusion | 1.15E-02 |
| 79 | GO:0009960: endosperm development | 1.15E-02 |
| 80 | GO:0010305: leaf vascular tissue pattern formation | 1.15E-02 |
| 81 | GO:0048825: cotyledon development | 1.27E-02 |
| 82 | GO:0080156: mitochondrial mRNA modification | 1.34E-02 |
| 83 | GO:0046686: response to cadmium ion | 1.72E-02 |
| 84 | GO:0006457: protein folding | 1.89E-02 |
| 85 | GO:0016049: cell growth | 2.02E-02 |
| 86 | GO:0010311: lateral root formation | 2.17E-02 |
| 87 | GO:0048527: lateral root development | 2.32E-02 |
| 88 | GO:0006099: tricarboxylic acid cycle | 2.56E-02 |
| 89 | GO:0045892: negative regulation of transcription, DNA-templated | 2.68E-02 |
| 90 | GO:0000154: rRNA modification | 3.23E-02 |
| 91 | GO:0006417: regulation of translation | 3.95E-02 |
| 92 | GO:0048367: shoot system development | 4.23E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003723: RNA binding | 1.01E-20 |
| 3 | GO:0000166: nucleotide binding | 7.35E-13 |
| 4 | GO:0030515: snoRNA binding | 3.47E-09 |
| 5 | GO:0003735: structural constituent of ribosome | 4.18E-08 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 9.18E-07 |
| 7 | GO:0004407: histone deacetylase activity | 1.91E-05 |
| 8 | GO:0008026: ATP-dependent helicase activity | 1.10E-04 |
| 9 | GO:0048037: cofactor binding | 1.35E-04 |
| 10 | GO:1990259: histone-glutamine methyltransferase activity | 1.35E-04 |
| 11 | GO:0042134: rRNA primary transcript binding | 1.35E-04 |
| 12 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.35E-04 |
| 13 | GO:0004004: ATP-dependent RNA helicase activity | 1.76E-04 |
| 14 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.11E-04 |
| 15 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.11E-04 |
| 16 | GO:0005078: MAP-kinase scaffold activity | 3.11E-04 |
| 17 | GO:0008649: rRNA methyltransferase activity | 5.13E-04 |
| 18 | GO:0070181: small ribosomal subunit rRNA binding | 5.13E-04 |
| 19 | GO:0003689: DNA clamp loader activity | 1.23E-03 |
| 20 | GO:0008235: metalloexopeptidase activity | 2.12E-03 |
| 21 | GO:0050897: cobalt ion binding | 2.46E-03 |
| 22 | GO:0003746: translation elongation factor activity | 2.70E-03 |
| 23 | GO:0003678: DNA helicase activity | 3.17E-03 |
| 24 | GO:0001054: RNA polymerase I activity | 4.36E-03 |
| 25 | GO:0044183: protein binding involved in protein folding | 4.36E-03 |
| 26 | GO:0003729: mRNA binding | 4.45E-03 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.66E-03 |
| 28 | GO:0004521: endoribonuclease activity | 4.79E-03 |
| 29 | GO:0001056: RNA polymerase III activity | 4.79E-03 |
| 30 | GO:0000049: tRNA binding | 4.79E-03 |
| 31 | GO:0009982: pseudouridine synthase activity | 5.22E-03 |
| 32 | GO:0000175: 3'-5'-exoribonuclease activity | 5.22E-03 |
| 33 | GO:0051082: unfolded protein binding | 6.62E-03 |
| 34 | GO:0019843: rRNA binding | 8.29E-03 |
| 35 | GO:0016787: hydrolase activity | 8.40E-03 |
| 36 | GO:0004527: exonuclease activity | 1.15E-02 |
| 37 | GO:0008168: methyltransferase activity | 1.71E-02 |
| 38 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.02E-02 |
| 39 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.09E-02 |
| 40 | GO:0005507: copper ion binding | 2.13E-02 |
| 41 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.56E-02 |
| 42 | GO:0003924: GTPase activity | 3.26E-02 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.31E-02 |
| 44 | GO:0004519: endonuclease activity | 3.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 8.41E-39 |
| 6 | GO:0032040: small-subunit processome | 1.68E-14 |
| 7 | GO:0005634: nucleus | 4.78E-09 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.86E-07 |
| 9 | GO:0030687: preribosome, large subunit precursor | 7.11E-07 |
| 10 | GO:0070545: PeBoW complex | 9.18E-07 |
| 11 | GO:0005840: ribosome | 2.18E-06 |
| 12 | GO:0005834: heterotrimeric G-protein complex | 4.57E-06 |
| 13 | GO:0031428: box C/D snoRNP complex | 3.71E-05 |
| 14 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.35E-04 |
| 15 | GO:0030688: preribosome, small subunit precursor | 1.35E-04 |
| 16 | GO:0015030: Cajal body | 1.69E-04 |
| 17 | GO:0005759: mitochondrial matrix | 2.18E-04 |
| 18 | GO:0022627: cytosolic small ribosomal subunit | 4.00E-04 |
| 19 | GO:0015935: small ribosomal subunit | 5.84E-04 |
| 20 | GO:0022626: cytosolic ribosome | 5.99E-04 |
| 21 | GO:0031429: box H/ACA snoRNP complex | 7.34E-04 |
| 22 | GO:0022625: cytosolic large ribosomal subunit | 7.63E-04 |
| 23 | GO:0005663: DNA replication factor C complex | 9.73E-04 |
| 24 | GO:0000178: exosome (RNase complex) | 1.23E-03 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 1.64E-03 |
| 26 | GO:0016363: nuclear matrix | 1.81E-03 |
| 27 | GO:0034399: nuclear periphery | 2.46E-03 |
| 28 | GO:0005618: cell wall | 2.63E-03 |
| 29 | GO:0005763: mitochondrial small ribosomal subunit | 3.17E-03 |
| 30 | GO:0005736: DNA-directed RNA polymerase I complex | 3.17E-03 |
| 31 | GO:0005666: DNA-directed RNA polymerase III complex | 3.55E-03 |
| 32 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.36E-03 |
| 33 | GO:0019013: viral nucleocapsid | 5.22E-03 |
| 34 | GO:0005747: mitochondrial respiratory chain complex I | 5.68E-03 |
| 35 | GO:0005774: vacuolar membrane | 6.27E-03 |
| 36 | GO:0005758: mitochondrial intermembrane space | 7.11E-03 |
| 37 | GO:0005654: nucleoplasm | 8.07E-03 |
| 38 | GO:0019898: extrinsic component of membrane | 1.27E-02 |
| 39 | GO:0005739: mitochondrion | 1.34E-02 |
| 40 | GO:0016592: mediator complex | 1.40E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.32E-02 |
| 42 | GO:0005829: cytosol | 2.79E-02 |
| 43 | GO:0009506: plasmodesma | 3.38E-02 |
| 44 | GO:0005681: spliceosomal complex | 4.13E-02 |
| 45 | GO:0016607: nuclear speck | 4.23E-02 |