Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000495: box H/ACA snoRNA 3'-end processing0.00E+00
2GO:0072321: chaperone-mediated protein transport0.00E+00
3GO:0044843: cell cycle G1/S phase transition0.00E+00
4GO:0071731: response to nitric oxide0.00E+00
5GO:1990481: mRNA pseudouridine synthesis0.00E+00
6GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
7GO:0006364: rRNA processing4.39E-22
8GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)9.18E-07
9GO:0010162: seed dormancy process4.19E-06
10GO:0009553: embryo sac development5.78E-06
11GO:0006412: translation6.06E-06
12GO:0042273: ribosomal large subunit biogenesis1.51E-05
13GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.23E-05
14GO:0042254: ribosome biogenesis6.71E-05
15GO:0031120: snRNA pseudouridine synthesis1.35E-04
16GO:0000469: cleavage involved in rRNA processing1.35E-04
17GO:0031118: rRNA pseudouridine synthesis1.35E-04
18GO:0035266: meristem growth1.35E-04
19GO:0030490: maturation of SSU-rRNA1.35E-04
20GO:0000494: box C/D snoRNA 3'-end processing1.35E-04
21GO:0043985: histone H4-R3 methylation1.35E-04
22GO:1990258: histone glutamine methylation1.35E-04
23GO:0080009: mRNA methylation3.11E-04
24GO:0045041: protein import into mitochondrial intermembrane space3.11E-04
25GO:0034470: ncRNA processing3.11E-04
26GO:0048569: post-embryonic animal organ development3.11E-04
27GO:0009967: positive regulation of signal transduction3.11E-04
28GO:0009944: polarity specification of adaxial/abaxial axis4.84E-04
29GO:0045039: protein import into mitochondrial inner membrane5.13E-04
30GO:0045604: regulation of epidermal cell differentiation5.13E-04
31GO:0051302: regulation of cell division5.33E-04
32GO:0007005: mitochondrion organization6.38E-04
33GO:0009294: DNA mediated transformation6.94E-04
34GO:0007276: gamete generation7.34E-04
35GO:0009855: determination of bilateral symmetry7.34E-04
36GO:0051131: chaperone-mediated protein complex assembly7.34E-04
37GO:0009561: megagametogenesis7.52E-04
38GO:0010501: RNA secondary structure unwinding8.75E-04
39GO:0000460: maturation of 5.8S rRNA9.73E-04
40GO:0006479: protein methylation9.73E-04
41GO:1900864: mitochondrial RNA modification9.73E-04
42GO:0046345: abscisic acid catabolic process9.73E-04
43GO:0042274: ribosomal small subunit biogenesis9.73E-04
44GO:0031167: rRNA methylation1.23E-03
45GO:0000470: maturation of LSU-rRNA1.51E-03
46GO:0016554: cytidine to uridine editing1.51E-03
47GO:0009920: cell plate formation involved in plant-type cell wall biogenesis1.51E-03
48GO:0006458: 'de novo' protein folding1.81E-03
49GO:0048444: floral organ morphogenesis1.81E-03
50GO:0009451: RNA modification1.81E-03
51GO:0010077: maintenance of inflorescence meristem identity1.81E-03
52GO:0042026: protein refolding1.81E-03
53GO:0045995: regulation of embryonic development2.12E-03
54GO:0080186: developmental vegetative growth2.12E-03
55GO:0000028: ribosomal small subunit assembly2.46E-03
56GO:0042255: ribosome assembly2.46E-03
57GO:0001558: regulation of cell growth2.81E-03
58GO:0001510: RNA methylation2.81E-03
59GO:0006261: DNA-dependent DNA replication2.81E-03
60GO:2000024: regulation of leaf development3.17E-03
61GO:0010449: root meristem growth3.55E-03
62GO:1900865: chloroplast RNA modification3.55E-03
63GO:0030422: production of siRNA involved in RNA interference3.95E-03
64GO:0006259: DNA metabolic process3.95E-03
65GO:0010582: floral meristem determinacy4.79E-03
66GO:0006626: protein targeting to mitochondrion5.22E-03
67GO:2000012: regulation of auxin polar transport5.22E-03
68GO:0010030: positive regulation of seed germination6.14E-03
69GO:0016569: covalent chromatin modification6.23E-03
70GO:0006396: RNA processing6.82E-03
71GO:0000027: ribosomal large subunit assembly7.11E-03
72GO:0010073: meristem maintenance7.62E-03
73GO:0061077: chaperone-mediated protein folding8.14E-03
74GO:0071215: cellular response to abscisic acid stimulus9.21E-03
75GO:0009790: embryo development9.68E-03
76GO:0008033: tRNA processing1.09E-02
77GO:0000413: protein peptidyl-prolyl isomerization1.09E-02
78GO:0010197: polar nucleus fusion1.15E-02
79GO:0009960: endosperm development1.15E-02
80GO:0010305: leaf vascular tissue pattern formation1.15E-02
81GO:0048825: cotyledon development1.27E-02
82GO:0080156: mitochondrial mRNA modification1.34E-02
83GO:0046686: response to cadmium ion1.72E-02
84GO:0006457: protein folding1.89E-02
85GO:0016049: cell growth2.02E-02
86GO:0010311: lateral root formation2.17E-02
87GO:0048527: lateral root development2.32E-02
88GO:0006099: tricarboxylic acid cycle2.56E-02
89GO:0045892: negative regulation of transcription, DNA-templated2.68E-02
90GO:0000154: rRNA modification3.23E-02
91GO:0006417: regulation of translation3.95E-02
92GO:0048367: shoot system development4.23E-02
RankGO TermAdjusted P value
1GO:0016018: cyclosporin A binding0.00E+00
2GO:0003723: RNA binding1.01E-20
3GO:0000166: nucleotide binding7.35E-13
4GO:0030515: snoRNA binding3.47E-09
5GO:0003735: structural constituent of ribosome4.18E-08
6GO:0043021: ribonucleoprotein complex binding9.18E-07
7GO:0004407: histone deacetylase activity1.91E-05
8GO:0008026: ATP-dependent helicase activity1.10E-04
9GO:0048037: cofactor binding1.35E-04
10GO:1990259: histone-glutamine methyltransferase activity1.35E-04
11GO:0042134: rRNA primary transcript binding1.35E-04
12GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity1.35E-04
13GO:0004004: ATP-dependent RNA helicase activity1.76E-04
14GO:0004776: succinate-CoA ligase (GDP-forming) activity3.11E-04
15GO:0004775: succinate-CoA ligase (ADP-forming) activity3.11E-04
16GO:0005078: MAP-kinase scaffold activity3.11E-04
17GO:0008649: rRNA methyltransferase activity5.13E-04
18GO:0070181: small ribosomal subunit rRNA binding5.13E-04
19GO:0003689: DNA clamp loader activity1.23E-03
20GO:0008235: metalloexopeptidase activity2.12E-03
21GO:0050897: cobalt ion binding2.46E-03
22GO:0003746: translation elongation factor activity2.70E-03
23GO:0003678: DNA helicase activity3.17E-03
24GO:0001054: RNA polymerase I activity4.36E-03
25GO:0044183: protein binding involved in protein folding4.36E-03
26GO:0003729: mRNA binding4.45E-03
27GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.66E-03
28GO:0004521: endoribonuclease activity4.79E-03
29GO:0001056: RNA polymerase III activity4.79E-03
30GO:0000049: tRNA binding4.79E-03
31GO:0009982: pseudouridine synthase activity5.22E-03
32GO:0000175: 3'-5'-exoribonuclease activity5.22E-03
33GO:0051082: unfolded protein binding6.62E-03
34GO:0019843: rRNA binding8.29E-03
35GO:0016787: hydrolase activity8.40E-03
36GO:0004527: exonuclease activity1.15E-02
37GO:0008168: methyltransferase activity1.71E-02
38GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.02E-02
39GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.09E-02
40GO:0005507: copper ion binding2.13E-02
41GO:0000987: core promoter proximal region sequence-specific DNA binding2.56E-02
42GO:0003924: GTPase activity3.26E-02
43GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.31E-02
44GO:0004519: endonuclease activity3.54E-02
RankGO TermAdjusted P value
1GO:0034457: Mpp10 complex0.00E+00
2GO:0034455: t-UTP complex0.00E+00
3GO:0036396: MIS complex0.00E+00
4GO:0042719: mitochondrial intermembrane space protein transporter complex0.00E+00
5GO:0005730: nucleolus8.41E-39
6GO:0032040: small-subunit processome1.68E-14
7GO:0005634: nucleus4.78E-09
8GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.86E-07
9GO:0030687: preribosome, large subunit precursor7.11E-07
10GO:0070545: PeBoW complex9.18E-07
11GO:0005840: ribosome2.18E-06
12GO:0005834: heterotrimeric G-protein complex4.57E-06
13GO:0031428: box C/D snoRNP complex3.71E-05
14GO:0034388: Pwp2p-containing subcomplex of 90S preribosome1.35E-04
15GO:0030688: preribosome, small subunit precursor1.35E-04
16GO:0015030: Cajal body1.69E-04
17GO:0005759: mitochondrial matrix2.18E-04
18GO:0022627: cytosolic small ribosomal subunit4.00E-04
19GO:0015935: small ribosomal subunit5.84E-04
20GO:0022626: cytosolic ribosome5.99E-04
21GO:0031429: box H/ACA snoRNP complex7.34E-04
22GO:0022625: cytosolic large ribosomal subunit7.63E-04
23GO:0005663: DNA replication factor C complex9.73E-04
24GO:0000178: exosome (RNase complex)1.23E-03
25GO:0030529: intracellular ribonucleoprotein complex1.64E-03
26GO:0016363: nuclear matrix1.81E-03
27GO:0034399: nuclear periphery2.46E-03
28GO:0005618: cell wall2.63E-03
29GO:0005763: mitochondrial small ribosomal subunit3.17E-03
30GO:0005736: DNA-directed RNA polymerase I complex3.17E-03
31GO:0005666: DNA-directed RNA polymerase III complex3.55E-03
32GO:0005852: eukaryotic translation initiation factor 3 complex4.36E-03
33GO:0019013: viral nucleocapsid5.22E-03
34GO:0005747: mitochondrial respiratory chain complex I5.68E-03
35GO:0005774: vacuolar membrane6.27E-03
36GO:0005758: mitochondrial intermembrane space7.11E-03
37GO:0005654: nucleoplasm8.07E-03
38GO:0019898: extrinsic component of membrane1.27E-02
39GO:0005739: mitochondrion1.34E-02
40GO:0016592: mediator complex1.40E-02
41GO:0015934: large ribosomal subunit2.32E-02
42GO:0005829: cytosol2.79E-02
43GO:0009506: plasmodesma3.38E-02
44GO:0005681: spliceosomal complex4.13E-02
45GO:0016607: nuclear speck4.23E-02
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Gene type



Gene DE type