co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0042353: fucose biosynthetic process	0.00E+00
3	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
4	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
5	GO:0046967: cytosol to ER transport	0.00E+00
6	GO:0032499: detection of peptidoglycan	0.00E+00
7	GO:2001143: N-methylnicotinate transport	0.00E+00
8	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
9	GO:2001142: nicotinate transport	0.00E+00
10	GO:0006955: immune response	8.05E-05
11	GO:0002229: defense response to oomycetes	9.67E-05
12	GO:0051180: vitamin transport	1.48E-04
13	GO:0006562: proline catabolic process	1.48E-04
14	GO:0007229: integrin-mediated signaling pathway	1.48E-04
15	GO:0030974: thiamine pyrophosphate transport	1.48E-04
16	GO:0050691: regulation of defense response to virus by host	1.48E-04
17	GO:0032491: detection of molecule of fungal origin	1.48E-04
18	GO:1900384: regulation of flavonol biosynthetic process	1.48E-04
19	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.48E-04
20	GO:0006468: protein phosphorylation	2.27E-04
21	GO:0009737: response to abscisic acid	2.38E-04
22	GO:0015893: drug transport	3.38E-04
23	GO:0046939: nucleotide phosphorylation	3.38E-04
24	GO:0010155: regulation of proton transport	3.38E-04
25	GO:0010133: proline catabolic process to glutamate	3.38E-04
26	GO:0050684: regulation of mRNA processing	3.38E-04
27	GO:0010372: positive regulation of gibberellin biosynthetic process	3.38E-04
28	GO:0070588: calcium ion transmembrane transport	4.40E-04
29	GO:0009863: salicylic acid mediated signaling pathway	5.43E-04
30	GO:0080168: abscisic acid transport	5.54E-04
31	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	5.54E-04
32	GO:0006598: polyamine catabolic process	5.54E-04
33	GO:0032784: regulation of DNA-templated transcription, elongation	5.54E-04
34	GO:0010447: response to acidic pH	5.54E-04
35	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	5.54E-04
36	GO:0009695: jasmonic acid biosynthetic process	5.98E-04
37	GO:0009686: gibberellin biosynthetic process	7.78E-04
38	GO:0030100: regulation of endocytosis	7.93E-04
39	GO:0009399: nitrogen fixation	7.93E-04
40	GO:0006537: glutamate biosynthetic process	7.93E-04
41	GO:0033014: tetrapyrrole biosynthetic process	7.93E-04
42	GO:0071323: cellular response to chitin	7.93E-04
43	GO:0009611: response to wounding	8.33E-04
44	GO:0071219: cellular response to molecule of bacterial origin	1.05E-03
45	GO:0034440: lipid oxidation	1.05E-03
46	GO:1902347: response to strigolactone	1.05E-03
47	GO:0045227: capsule polysaccharide biosynthetic process	1.05E-03
48	GO:0009652: thigmotropism	1.05E-03
49	GO:0045727: positive regulation of translation	1.05E-03
50	GO:0033358: UDP-L-arabinose biosynthetic process	1.05E-03
51	GO:0009742: brassinosteroid mediated signaling pathway	1.11E-03
52	GO:0048544: recognition of pollen	1.13E-03
53	GO:0009749: response to glucose	1.21E-03
54	GO:0045487: gibberellin catabolic process	1.33E-03
55	GO:0030041: actin filament polymerization	1.33E-03
56	GO:1900425: negative regulation of defense response to bacterium	1.63E-03
57	GO:0010337: regulation of salicylic acid metabolic process	1.63E-03
58	GO:0006014: D-ribose metabolic process	1.63E-03
59	GO:0010942: positive regulation of cell death	1.63E-03
60	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.63E-03
61	GO:0010256: endomembrane system organization	1.63E-03
62	GO:0048317: seed morphogenesis	1.63E-03
63	GO:0046686: response to cadmium ion	1.65E-03
64	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.95E-03
65	GO:0010555: response to mannitol	1.96E-03
66	GO:0080086: stamen filament development	1.96E-03
67	GO:2000067: regulation of root morphogenesis	1.96E-03
68	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.30E-03
69	GO:0010044: response to aluminum ion	2.30E-03
70	GO:0008219: cell death	2.40E-03
71	GO:0009617: response to bacterium	2.56E-03
72	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.66E-03
73	GO:0006402: mRNA catabolic process	2.66E-03
74	GO:1900150: regulation of defense response to fungus	2.66E-03
75	GO:2000070: regulation of response to water deprivation	2.66E-03
76	GO:0045010: actin nucleation	2.66E-03
77	GO:0045087: innate immune response	3.03E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	3.04E-03
79	GO:0060321: acceptance of pollen	3.04E-03
80	GO:0090333: regulation of stomatal closure	3.44E-03
81	GO:0006783: heme biosynthetic process	3.44E-03
82	GO:0009835: fruit ripening	3.44E-03
83	GO:0006839: mitochondrial transport	3.45E-03
84	GO:2000280: regulation of root development	3.86E-03
85	GO:0008202: steroid metabolic process	3.86E-03
86	GO:0006779: porphyrin-containing compound biosynthetic process	3.86E-03
87	GO:0051707: response to other organism	3.90E-03
88	GO:0006970: response to osmotic stress	3.91E-03
89	GO:0035556: intracellular signal transduction	3.94E-03
90	GO:0016310: phosphorylation	4.05E-03
91	GO:0006782: protoporphyrinogen IX biosynthetic process	4.29E-03
92	GO:0019538: protein metabolic process	4.29E-03
93	GO:0048829: root cap development	4.29E-03
94	GO:0009750: response to fructose	4.73E-03
95	GO:0030148: sphingolipid biosynthetic process	4.73E-03
96	GO:0010015: root morphogenesis	4.73E-03
97	GO:0010200: response to chitin	4.88E-03
98	GO:0046777: protein autophosphorylation	5.09E-03
99	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.20E-03
100	GO:0006886: intracellular protein transport	6.12E-03
101	GO:0002237: response to molecule of bacterial origin	6.17E-03
102	GO:0034605: cellular response to heat	6.17E-03
103	GO:0009901: anther dehiscence	6.67E-03
104	GO:0046854: phosphatidylinositol phosphorylation	6.67E-03
105	GO:0009969: xyloglucan biosynthetic process	6.67E-03
106	GO:0009225: nucleotide-sugar metabolic process	6.67E-03
107	GO:0009620: response to fungus	6.82E-03
108	GO:0006952: defense response	7.11E-03
109	GO:0009651: response to salt stress	7.47E-03
110	GO:0009408: response to heat	7.67E-03
111	GO:0031408: oxylipin biosynthetic process	8.85E-03
112	GO:0016998: cell wall macromolecule catabolic process	8.85E-03
113	GO:0030433: ubiquitin-dependent ERAD pathway	9.43E-03
114	GO:0009693: ethylene biosynthetic process	1.00E-02
115	GO:0071215: cellular response to abscisic acid stimulus	1.00E-02
116	GO:0040007: growth	1.00E-02
117	GO:0006012: galactose metabolic process	1.00E-02
118	GO:0042742: defense response to bacterium	1.06E-02
119	GO:0006817: phosphate ion transport	1.06E-02
120	GO:0009306: protein secretion	1.06E-02
121	GO:0048653: anther development	1.19E-02
122	GO:0042631: cellular response to water deprivation	1.19E-02
123	GO:0048868: pollen tube development	1.25E-02
124	GO:0009960: endosperm development	1.25E-02
125	GO:0019252: starch biosynthetic process	1.39E-02
126	GO:0010193: response to ozone	1.45E-02
127	GO:0006891: intra-Golgi vesicle-mediated transport	1.45E-02
128	GO:0006470: protein dephosphorylation	1.48E-02
129	GO:0007166: cell surface receptor signaling pathway	1.48E-02
130	GO:0031047: gene silencing by RNA	1.52E-02
131	GO:0009630: gravitropism	1.52E-02
132	GO:0009555: pollen development	1.59E-02
133	GO:0009639: response to red or far red light	1.67E-02
134	GO:0016579: protein deubiquitination	1.81E-02
135	GO:0006810: transport	1.88E-02
136	GO:0001666: response to hypoxia	1.89E-02
137	GO:0009615: response to virus	1.89E-02
138	GO:0009816: defense response to bacterium, incompatible interaction	1.97E-02
139	GO:0015995: chlorophyll biosynthetic process	2.12E-02
140	GO:0048573: photoperiodism, flowering	2.12E-02
141	GO:0016049: cell growth	2.20E-02
142	GO:0009817: defense response to fungus, incompatible interaction	2.28E-02
143	GO:0009723: response to ethylene	2.32E-02
144	GO:0010311: lateral root formation	2.36E-02
145	GO:0010119: regulation of stomatal movement	2.53E-02
146	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.58E-02
147	GO:0016051: carbohydrate biosynthetic process	2.70E-02
148	GO:0006897: endocytosis	3.05E-02
149	GO:0009640: photomorphogenesis	3.23E-02
150	GO:0009744: response to sucrose	3.23E-02
151	GO:0009636: response to toxic substance	3.51E-02
152	GO:0006855: drug transmembrane transport	3.61E-02
153	GO:0009751: response to salicylic acid	3.62E-02
154	GO:0031347: regulation of defense response	3.71E-02
155	GO:0009846: pollen germination	3.80E-02
156	GO:0048364: root development	3.83E-02
157	GO:0006397: mRNA processing	3.83E-02
158	GO:0006979: response to oxidative stress	3.88E-02
159	GO:0008152: metabolic process	4.04E-02
160	GO:0009626: plant-type hypersensitive response	4.71E-02
161	GO:0009873: ethylene-activated signaling pathway	4.72E-02
162	GO:0016569: covalent chromatin modification	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
2	GO:2001080: chitosan binding	0.00E+00
3	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
4	GO:0061798: GTP 3',8'-cyclase activity	0.00E+00
5	GO:0090416: nicotinate transporter activity	0.00E+00
6	GO:0016301: kinase activity	3.45E-07
7	GO:0005524: ATP binding	2.87E-05
8	GO:0004674: protein serine/threonine kinase activity	4.33E-05
9	GO:0102425: myricetin 3-O-glucosyltransferase activity	8.05E-05
10	GO:0102360: daphnetin 3-O-glucosyltransferase activity	8.05E-05
11	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.04E-04
12	GO:0004657: proline dehydrogenase activity	1.48E-04
13	GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity	1.48E-04
14	GO:0090440: abscisic acid transporter activity	1.48E-04
15	GO:0052894: norspermine:oxygen oxidoreductase activity	1.48E-04
16	GO:0090422: thiamine pyrophosphate transporter activity	1.48E-04
17	GO:0015085: calcium ion transmembrane transporter activity	1.48E-04
18	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.38E-04
19	GO:0004103: choline kinase activity	3.38E-04
20	GO:0008883: glutamyl-tRNA reductase activity	3.38E-04
21	GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity	3.38E-04
22	GO:0005388: calcium-transporting ATPase activity	3.47E-04
23	GO:0004672: protein kinase activity	3.87E-04
24	GO:0031683: G-protein beta/gamma-subunit complex binding	5.54E-04
25	GO:0004758: serine C-palmitoyltransferase activity	5.54E-04
26	GO:0046423: allene-oxide cyclase activity	5.54E-04
27	GO:0004383: guanylate cyclase activity	5.54E-04
28	GO:0016165: linoleate 13S-lipoxygenase activity	5.54E-04
29	GO:0001664: G-protein coupled receptor binding	5.54E-04
30	GO:0046592: polyamine oxidase activity	5.54E-04
31	GO:0035251: UDP-glucosyltransferase activity	6.55E-04
32	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	7.93E-04
33	GO:0019201: nucleotide kinase activity	7.93E-04
34	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	7.93E-04
35	GO:0001653: peptide receptor activity	7.93E-04
36	GO:0019199: transmembrane receptor protein kinase activity	1.05E-03
37	GO:0050373: UDP-arabinose 4-epimerase activity	1.05E-03
38	GO:0043015: gamma-tubulin binding	1.05E-03
39	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.33E-03
40	GO:0047631: ADP-ribose diphosphatase activity	1.33E-03
41	GO:0002020: protease binding	1.33E-03
42	GO:0004356: glutamate-ammonia ligase activity	1.33E-03
43	GO:0004747: ribokinase activity	1.96E-03
44	GO:0004017: adenylate kinase activity	1.96E-03
45	GO:0003978: UDP-glucose 4-epimerase activity	1.96E-03
46	GO:0008143: poly(A) binding	2.30E-03
47	GO:0004143: diacylglycerol kinase activity	2.30E-03
48	GO:0008865: fructokinase activity	2.66E-03
49	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.66E-03
50	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.66E-03
51	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.04E-03
52	GO:0004430: 1-phosphatidylinositol 4-kinase activity	3.04E-03
53	GO:0003951: NAD+ kinase activity	3.04E-03
54	GO:0008142: oxysterol binding	3.04E-03
55	GO:0004630: phospholipase D activity	3.04E-03
56	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.31E-03
57	GO:0019888: protein phosphatase regulator activity	5.68E-03
58	GO:0030246: carbohydrate binding	5.69E-03
59	GO:0008131: primary amine oxidase activity	6.17E-03
60	GO:0004722: protein serine/threonine phosphatase activity	6.61E-03
61	GO:0008061: chitin binding	6.67E-03
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.82E-03
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.82E-03
64	GO:0003779: actin binding	7.24E-03
65	GO:0016757: transferase activity, transferring glycosyl groups	7.67E-03
66	GO:0033612: receptor serine/threonine kinase binding	8.85E-03
67	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.85E-03
68	GO:0016758: transferase activity, transferring hexosyl groups	9.10E-03
69	GO:0022891: substrate-specific transmembrane transporter activity	1.00E-02
70	GO:0046872: metal ion binding	1.02E-02
71	GO:0030170: pyridoxal phosphate binding	1.04E-02
72	GO:0008565: protein transporter activity	1.12E-02
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.21E-02
74	GO:0008536: Ran GTPase binding	1.25E-02
75	GO:0019901: protein kinase binding	1.39E-02
76	GO:0008194: UDP-glycosyltransferase activity	1.45E-02
77	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.45E-02
78	GO:0004518: nuclease activity	1.52E-02
79	GO:0003729: mRNA binding	1.92E-02
80	GO:0008375: acetylglucosaminyltransferase activity	2.04E-02
81	GO:0030247: polysaccharide binding	2.12E-02
82	GO:0004721: phosphoprotein phosphatase activity	2.12E-02
83	GO:0015238: drug transmembrane transporter activity	2.36E-02
84	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.53E-02
85	GO:0005516: calmodulin binding	2.66E-02
86	GO:0051539: 4 iron, 4 sulfur cluster binding	2.96E-02
87	GO:0050661: NADP binding	2.96E-02
88	GO:0005525: GTP binding	2.97E-02
89	GO:0004871: signal transducer activity	3.12E-02
90	GO:0035091: phosphatidylinositol binding	3.42E-02
91	GO:0043621: protein self-association	3.42E-02
92	GO:0003924: GTPase activity	3.67E-02
93	GO:0031625: ubiquitin protein ligase binding	4.30E-02
94	GO:0003824: catalytic activity	4.30E-02
95	GO:0022857: transmembrane transporter activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.29E-07
2	GO:0016442: RISC complex	1.48E-04
3	GO:0019008: molybdopterin synthase complex	1.48E-04
4	GO:0010494: cytoplasmic stress granule	1.60E-04
5	GO:0008287: protein serine/threonine phosphatase complex	5.54E-04
6	GO:0032580: Golgi cisterna membrane	1.56E-03
7	GO:0016363: nuclear matrix	1.96E-03
8	GO:0030173: integral component of Golgi membrane	1.96E-03
9	GO:0009506: plasmodesma	3.06E-03
10	GO:0090404: pollen tube tip	4.73E-03
11	GO:0071013: catalytic step 2 spliceosome	4.73E-03
12	GO:0048471: perinuclear region of cytoplasm	4.73E-03
13	GO:0000159: protein phosphatase type 2A complex	4.73E-03
14	GO:0005795: Golgi stack	6.67E-03
15	GO:0043234: protein complex	7.20E-03
16	GO:0005875: microtubule associated complex	7.20E-03
17	GO:0043231: intracellular membrane-bounded organelle	8.68E-03
18	GO:0005768: endosome	9.01E-03
19	GO:0030136: clathrin-coated vesicle	1.13E-02
20	GO:0005770: late endosome	1.25E-02
21	GO:0000145: exocyst	1.52E-02
22	GO:0000932: P-body	1.89E-02
23	GO:0005789: endoplasmic reticulum membrane	2.00E-02
24	GO:0005829: cytosol	2.04E-02
25	GO:0005643: nuclear pore	2.28E-02
26	GO:0019005: SCF ubiquitin ligase complex	2.28E-02
27	GO:0009707: chloroplast outer membrane	2.28E-02
28	GO:0031902: late endosome membrane	3.05E-02
29	GO:0005743: mitochondrial inner membrane	3.42E-02
30	GO:0005635: nuclear envelope	4.20E-02
31	GO:0010008: endosome membrane	4.61E-02
32	GO:0005834: heterotrimeric G-protein complex	4.71E-02
33	GO:0005887: integral component of plasma membrane	4.96E-02