co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
2	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0072321: chaperone-mediated protein transport	0.00E+00
5	GO:0044843: cell cycle G1/S phase transition	0.00E+00
6	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
7	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
8	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
9	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
10	GO:1990258: histone glutamine methylation	0.00E+00
11	GO:0006412: translation	2.43E-102
12	GO:0042254: ribosome biogenesis	4.80E-30
13	GO:0000027: ribosomal large subunit assembly	1.26E-11
14	GO:0006626: protein targeting to mitochondrion	2.06E-10
15	GO:0006364: rRNA processing	4.33E-09
16	GO:0006458: 'de novo' protein folding	3.02E-06
17	GO:0045041: protein import into mitochondrial intermembrane space	3.89E-06
18	GO:0009735: response to cytokinin	6.29E-06
19	GO:0010162: seed dormancy process	2.60E-05
20	GO:0042274: ribosomal small subunit biogenesis	5.61E-05
21	GO:0031167: rRNA methylation	8.85E-05
22	GO:0030150: protein import into mitochondrial matrix	1.04E-04
23	GO:0061077: chaperone-mediated protein folding	1.38E-04
24	GO:0009955: adaxial/abaxial pattern specification	1.76E-04
25	GO:0042026: protein refolding	1.76E-04
26	GO:0000028: ribosomal small subunit assembly	2.91E-04
27	GO:0031120: snRNA pseudouridine synthesis	2.92E-04
28	GO:0031118: rRNA pseudouridine synthesis	2.92E-04
29	GO:0030490: maturation of SSU-rRNA	2.92E-04
30	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.92E-04
31	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.92E-04
32	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.92E-04
33	GO:0006407: rRNA export from nucleus	2.92E-04
34	GO:0001510: RNA methylation	3.57E-04
35	GO:2000072: regulation of defense response to fungus, incompatible interaction	6.40E-04
36	GO:0048569: post-embryonic animal organ development	6.40E-04
37	GO:0015786: UDP-glucose transport	6.40E-04
38	GO:0006913: nucleocytoplasmic transport	6.86E-04
39	GO:0002181: cytoplasmic translation	1.04E-03
40	GO:0015783: GDP-fucose transport	1.04E-03
41	GO:0042256: mature ribosome assembly	1.04E-03
42	GO:0045039: protein import into mitochondrial inner membrane	1.04E-03
43	GO:0006954: inflammatory response	1.04E-03
44	GO:1902626: assembly of large subunit precursor of preribosome	1.04E-03
45	GO:0009944: polarity specification of adaxial/abaxial axis	1.37E-03
46	GO:0072334: UDP-galactose transmembrane transport	1.48E-03
47	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.48E-03
48	GO:0006164: purine nucleotide biosynthetic process	1.48E-03
49	GO:0009855: determination of bilateral symmetry	1.48E-03
50	GO:0051131: chaperone-mediated protein complex assembly	1.48E-03
51	GO:0007005: mitochondrion organization	1.81E-03
52	GO:0009294: DNA mediated transformation	1.98E-03
53	GO:0040007: growth	1.98E-03
54	GO:0051781: positive regulation of cell division	1.99E-03
55	GO:0042273: ribosomal large subunit biogenesis	1.99E-03
56	GO:0008033: tRNA processing	2.51E-03
57	GO:0006564: L-serine biosynthetic process	2.54E-03
58	GO:1902183: regulation of shoot apical meristem development	2.54E-03
59	GO:0006414: translational elongation	2.62E-03
60	GO:0010197: polar nucleus fusion	2.71E-03
61	GO:0000470: maturation of LSU-rRNA	3.14E-03
62	GO:0000741: karyogamy	3.14E-03
63	GO:0045040: protein import into mitochondrial outer membrane	3.14E-03
64	GO:0009793: embryo development ending in seed dormancy	3.24E-03
65	GO:0009648: photoperiodism	3.77E-03
66	GO:1900057: positive regulation of leaf senescence	4.45E-03
67	GO:0080186: developmental vegetative growth	4.45E-03
68	GO:0042744: hydrogen peroxide catabolic process	5.51E-03
69	GO:0001558: regulation of cell growth	5.92E-03
70	GO:0006413: translational initiation	6.44E-03
71	GO:0006189: 'de novo' IMP biosynthetic process	6.71E-03
72	GO:0015780: nucleotide-sugar transport	6.71E-03
73	GO:0007338: single fertilization	6.71E-03
74	GO:0009051: pentose-phosphate shunt, oxidative branch	6.71E-03
75	GO:0048507: meristem development	6.71E-03
76	GO:0030422: production of siRNA involved in RNA interference	8.40E-03
77	GO:0010015: root morphogenesis	9.30E-03
78	GO:0009682: induced systemic resistance	9.30E-03
79	GO:0006820: anion transport	1.02E-02
80	GO:0008283: cell proliferation	1.03E-02
81	GO:0006006: glucose metabolic process	1.12E-02
82	GO:0009965: leaf morphogenesis	1.16E-02
83	GO:0002237: response to molecule of bacterial origin	1.22E-02
84	GO:0051302: regulation of cell division	1.65E-02
85	GO:0015992: proton transport	1.76E-02
86	GO:0048511: rhythmic process	1.76E-02
87	GO:0016569: covalent chromatin modification	1.87E-02
88	GO:0009553: embryo sac development	1.93E-02
89	GO:0010089: xylem development	2.12E-02
90	GO:0010584: pollen exine formation	2.12E-02
91	GO:0009561: megagametogenesis	2.12E-02
92	GO:0015031: protein transport	2.27E-02
93	GO:0006869: lipid transport	2.28E-02
94	GO:0010501: RNA secondary structure unwinding	2.37E-02
95	GO:0000413: protein peptidyl-prolyl isomerization	2.37E-02
96	GO:0009960: endosperm development	2.50E-02
97	GO:0009749: response to glucose	2.77E-02
98	GO:0000302: response to reactive oxygen species	2.91E-02
99	GO:0006635: fatty acid beta-oxidation	2.91E-02
100	GO:0080156: mitochondrial mRNA modification	2.91E-02
101	GO:0032502: developmental process	3.05E-02
102	GO:0009567: double fertilization forming a zygote and endosperm	3.34E-02
103	GO:0010029: regulation of seed germination	3.93E-02
104	GO:0006979: response to oxidative stress	4.54E-02
105	GO:0009651: response to salt stress	4.76E-02
106	GO:0006811: ion transport	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0016018: cyclosporin A binding	0.00E+00
4	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
5	GO:0003735: structural constituent of ribosome	3.35E-123
6	GO:0003729: mRNA binding	2.30E-23
7	GO:0019843: rRNA binding	1.01E-13
8	GO:0003723: RNA binding	1.49E-08
9	GO:0044183: protein binding involved in protein folding	6.69E-07
10	GO:0030515: snoRNA binding	4.86E-06
11	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.22E-06
12	GO:0008649: rRNA methyltransferase activity	1.39E-05
13	GO:0008097: 5S rRNA binding	3.12E-05
14	GO:0004407: histone deacetylase activity	1.04E-04
15	GO:0048037: cofactor binding	2.92E-04
16	GO:0001055: RNA polymerase II activity	5.10E-04
17	GO:0051082: unfolded protein binding	6.00E-04
18	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	6.40E-04
19	GO:0004776: succinate-CoA ligase (GDP-forming) activity	6.40E-04
20	GO:0004618: phosphoglycerate kinase activity	6.40E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	6.40E-04
22	GO:0004775: succinate-CoA ligase (ADP-forming) activity	6.40E-04
23	GO:0001054: RNA polymerase I activity	6.86E-04
24	GO:0001056: RNA polymerase III activity	7.84E-04
25	GO:0015266: protein channel activity	8.88E-04
26	GO:0005457: GDP-fucose transmembrane transporter activity	1.04E-03
27	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.04E-03
28	GO:0003746: translation elongation factor activity	1.12E-03
29	GO:0005460: UDP-glucose transmembrane transporter activity	1.48E-03
30	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.99E-03
31	GO:0005507: copper ion binding	2.39E-03
32	GO:0005459: UDP-galactose transmembrane transporter activity	2.54E-03
33	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.14E-03
34	GO:0008026: ATP-dependent helicase activity	3.78E-03
35	GO:0005338: nucleotide-sugar transmembrane transporter activity	4.45E-03
36	GO:0008235: metalloexopeptidase activity	4.45E-03
37	GO:0015288: porin activity	5.17E-03
38	GO:0008135: translation factor activity, RNA binding	5.92E-03
39	GO:0008308: voltage-gated anion channel activity	5.92E-03
40	GO:0000049: tRNA binding	1.02E-02
41	GO:0009982: pseudouridine synthase activity	1.12E-02
42	GO:0004601: peroxidase activity	1.23E-02
43	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.39E-02
44	GO:0000166: nucleotide binding	1.59E-02
45	GO:0051087: chaperone binding	1.65E-02
46	GO:0008514: organic anion transmembrane transporter activity	2.12E-02
47	GO:0016597: amino acid binding	3.63E-02
48	GO:0008289: lipid binding	3.97E-02
49	GO:0003743: translation initiation factor activity	4.01E-02
50	GO:0004004: ATP-dependent RNA helicase activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005832: chaperonin-containing T-complex	0.00E+00
3	GO:0005840: ribosome	2.83E-78
4	GO:0022626: cytosolic ribosome	1.77E-77
5	GO:0022625: cytosolic large ribosomal subunit	6.23E-72
6	GO:0022627: cytosolic small ribosomal subunit	1.09E-57
7	GO:0005730: nucleolus	1.15E-38
8	GO:0005829: cytosol	4.41E-26
9	GO:0009506: plasmodesma	2.07E-22
10	GO:0005737: cytoplasm	5.08E-18
11	GO:0015934: large ribosomal subunit	6.56E-12
12	GO:0005774: vacuolar membrane	1.02E-10
13	GO:0016020: membrane	1.09E-10
14	GO:0005618: cell wall	2.34E-09
15	GO:0015935: small ribosomal subunit	1.27E-07
16	GO:0005773: vacuole	1.37E-07
17	GO:0031428: box C/D snoRNP complex	1.74E-06
18	GO:0005742: mitochondrial outer membrane translocase complex	1.06E-05
19	GO:0032040: small-subunit processome	4.17E-05
20	GO:0005758: mitochondrial intermembrane space	1.04E-04
21	GO:0009507: chloroplast	2.35E-04
22	GO:0030686: 90S preribosome	2.92E-04
23	GO:0005736: DNA-directed RNA polymerase I complex	4.30E-04
24	GO:0005666: DNA-directed RNA polymerase III complex	5.10E-04
25	GO:0015030: Cajal body	5.10E-04
26	GO:0000418: DNA-directed RNA polymerase IV complex	5.95E-04
27	GO:0005665: DNA-directed RNA polymerase II, core complex	7.84E-04
28	GO:0005743: mitochondrial inner membrane	1.42E-03
29	GO:0031429: box H/ACA snoRNP complex	1.48E-03
30	GO:0005622: intracellular	3.71E-03
31	GO:0016272: prefoldin complex	3.77E-03
32	GO:0046930: pore complex	5.92E-03
33	GO:0005886: plasma membrane	6.20E-03
34	GO:0009707: chloroplast outer membrane	6.29E-03
35	GO:0031307: integral component of mitochondrial outer membrane	1.02E-02
36	GO:0019013: viral nucleocapsid	1.12E-02
37	GO:0000419: DNA-directed RNA polymerase V complex	1.43E-02
38	GO:0005747: mitochondrial respiratory chain complex I	1.70E-02
39	GO:0005741: mitochondrial outer membrane	1.76E-02
40	GO:0005834: heterotrimeric G-protein complex	1.76E-02
41	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.12E-02
42	GO:0016592: mediator complex	3.05E-02
43	GO:0005759: mitochondrial matrix	3.13E-02
44	GO:0030529: intracellular ribonucleoprotein complex	3.78E-02