Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019685: photosynthesis, dark reaction0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
5GO:0033231: carbohydrate export0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0017009: protein-phycocyanobilin linkage0.00E+00
8GO:1901965: endoplasmic reticulum to chloroplast transport0.00E+00
9GO:0018316: peptide cross-linking via L-cystine0.00E+00
10GO:0009661: chromoplast organization0.00E+00
11GO:0005997: xylulose metabolic process0.00E+00
12GO:0051246: regulation of protein metabolic process0.00E+00
13GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
14GO:0009658: chloroplast organization1.09E-07
15GO:0010190: cytochrome b6f complex assembly5.83E-06
16GO:0080005: photosystem stoichiometry adjustment9.54E-06
17GO:0000256: allantoin catabolic process9.54E-06
18GO:0048564: photosystem I assembly2.33E-05
19GO:0010136: ureide catabolic process3.26E-05
20GO:0006013: mannose metabolic process3.26E-05
21GO:0006145: purine nucleobase catabolic process7.03E-05
22GO:2001141: regulation of RNA biosynthetic process7.03E-05
23GO:0009767: photosynthetic electron transport chain1.43E-04
24GO:0010207: photosystem II assembly1.71E-04
25GO:0016120: carotene biosynthetic process1.89E-04
26GO:0055114: oxidation-reduction process2.60E-04
27GO:0071461: cellular response to redox state4.64E-04
28GO:0006436: tryptophanyl-tRNA aminoacylation4.64E-04
29GO:0006430: lysyl-tRNA aminoacylation4.64E-04
30GO:0080065: 4-alpha-methyl-delta7-sterol oxidation4.64E-04
31GO:1902334: fructose export from vacuole to cytoplasm4.64E-04
32GO:0010362: negative regulation of anion channel activity by blue light4.64E-04
33GO:0015755: fructose transport4.64E-04
34GO:0031426: polycistronic mRNA processing4.64E-04
35GO:0046900: tetrahydrofolylpolyglutamate metabolic process4.64E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process4.64E-04
37GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.64E-04
38GO:1990052: ER to chloroplast lipid transport4.64E-04
39GO:0071806: protein transmembrane transport4.64E-04
40GO:1904964: positive regulation of phytol biosynthetic process4.64E-04
41GO:0042371: vitamin K biosynthetic process4.64E-04
42GO:0071454: cellular response to anoxia4.64E-04
43GO:0009744: response to sucrose6.35E-04
44GO:0071482: cellular response to light stimulus7.02E-04
45GO:0009657: plastid organization7.02E-04
46GO:0080183: response to photooxidative stress1.00E-03
47GO:0080153: negative regulation of reductive pentose-phosphate cycle1.00E-03
48GO:0080185: effector dependent induction by symbiont of host immune response1.00E-03
49GO:0010275: NAD(P)H dehydrogenase complex assembly1.00E-03
50GO:0046741: transport of virus in host, tissue to tissue1.00E-03
51GO:0060359: response to ammonium ion1.00E-03
52GO:0048314: embryo sac morphogenesis1.00E-03
53GO:1902326: positive regulation of chlorophyll biosynthetic process1.00E-03
54GO:0034755: iron ion transmembrane transport1.00E-03
55GO:1904143: positive regulation of carotenoid biosynthetic process1.00E-03
56GO:0006352: DNA-templated transcription, initiation1.33E-03
57GO:0010027: thylakoid membrane organization1.40E-03
58GO:0043157: response to cation stress1.63E-03
59GO:0009150: purine ribonucleotide metabolic process1.63E-03
60GO:0051604: protein maturation1.63E-03
61GO:0006696: ergosterol biosynthetic process1.63E-03
62GO:0071836: nectar secretion1.63E-03
63GO:0005986: sucrose biosynthetic process1.73E-03
64GO:0015995: chlorophyll biosynthetic process1.73E-03
65GO:0018298: protein-chromophore linkage1.97E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.37E-03
67GO:0010371: regulation of gibberellin biosynthetic process2.37E-03
68GO:0071484: cellular response to light intensity2.37E-03
69GO:0046653: tetrahydrofolate metabolic process2.37E-03
70GO:0010239: chloroplast mRNA processing2.37E-03
71GO:0033014: tetrapyrrole biosynthetic process2.37E-03
72GO:0090307: mitotic spindle assembly2.37E-03
73GO:0006809: nitric oxide biosynthetic process2.37E-03
74GO:0050482: arachidonic acid secretion2.37E-03
75GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.37E-03
76GO:0043572: plastid fission2.37E-03
77GO:0007568: aging2.38E-03
78GO:0006418: tRNA aminoacylation for protein translation2.99E-03
79GO:0007017: microtubule-based process2.99E-03
80GO:0006808: regulation of nitrogen utilization3.18E-03
81GO:0015743: malate transport3.18E-03
82GO:0042274: ribosomal small subunit biogenesis3.18E-03
83GO:0009765: photosynthesis, light harvesting3.18E-03
84GO:0031122: cytoplasmic microtubule organization3.18E-03
85GO:0006552: leucine catabolic process3.18E-03
86GO:0009902: chloroplast relocation3.18E-03
87GO:0010021: amylopectin biosynthetic process3.18E-03
88GO:0016226: iron-sulfur cluster assembly3.59E-03
89GO:0035434: copper ion transmembrane transport4.08E-03
90GO:0016123: xanthophyll biosynthetic process4.08E-03
91GO:0010117: photoprotection4.08E-03
92GO:0045038: protein import into chloroplast thylakoid membrane4.08E-03
93GO:0009644: response to high light intensity4.09E-03
94GO:0016117: carotenoid biosynthetic process4.62E-03
95GO:0070417: cellular response to cold4.62E-03
96GO:0009416: response to light stimulus4.73E-03
97GO:0009959: negative gravitropism5.05E-03
98GO:0006555: methionine metabolic process5.05E-03
99GO:0033365: protein localization to organelle5.05E-03
100GO:0009643: photosynthetic acclimation5.05E-03
101GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione5.05E-03
102GO:0050665: hydrogen peroxide biosynthetic process5.05E-03
103GO:0006508: proteolysis5.88E-03
104GO:0009854: oxidative photosynthetic carbon pathway6.09E-03
105GO:0010019: chloroplast-nucleus signaling pathway6.09E-03
106GO:0019509: L-methionine salvage from methylthioadenosine6.09E-03
107GO:0009791: post-embryonic development6.23E-03
108GO:0048528: post-embryonic root development7.20E-03
109GO:1900056: negative regulation of leaf senescence7.20E-03
110GO:0010038: response to metal ion7.20E-03
111GO:0000105: histidine biosynthetic process8.39E-03
112GO:0006102: isocitrate metabolic process8.39E-03
113GO:0006644: phospholipid metabolic process8.39E-03
114GO:0030091: protein repair8.39E-03
115GO:0006605: protein targeting8.39E-03
116GO:0009704: de-etiolation8.39E-03
117GO:0050821: protein stabilization8.39E-03
118GO:0019430: removal of superoxide radicals9.63E-03
119GO:0032544: plastid translation9.63E-03
120GO:0009821: alkaloid biosynthetic process1.09E-02
121GO:0090305: nucleic acid phosphodiester bond hydrolysis1.09E-02
122GO:0048507: meristem development1.09E-02
123GO:0006783: heme biosynthetic process1.09E-02
124GO:0000373: Group II intron splicing1.09E-02
125GO:1900426: positive regulation of defense response to bacterium1.23E-02
126GO:0009638: phototropism1.23E-02
127GO:0006779: porphyrin-containing compound biosynthetic process1.23E-02
128GO:0009098: leucine biosynthetic process1.23E-02
129GO:0010380: regulation of chlorophyll biosynthetic process1.23E-02
130GO:0048481: plant ovule development1.27E-02
131GO:0015979: photosynthesis1.30E-02
132GO:0045036: protein targeting to chloroplast1.37E-02
133GO:0006259: DNA metabolic process1.37E-02
134GO:0051555: flavonol biosynthetic process1.37E-02
135GO:0006995: cellular response to nitrogen starvation1.37E-02
136GO:0006811: ion transport1.40E-02
137GO:0010043: response to zinc ion1.47E-02
138GO:0006265: DNA topological change1.52E-02
139GO:0043085: positive regulation of catalytic activity1.52E-02
140GO:0009773: photosynthetic electron transport in photosystem I1.52E-02
141GO:0008285: negative regulation of cell proliferation1.52E-02
142GO:1903507: negative regulation of nucleic acid-templated transcription1.52E-02
143GO:0006879: cellular iron ion homeostasis1.52E-02
144GO:0009750: response to fructose1.52E-02
145GO:0006790: sulfur compound metabolic process1.68E-02
146GO:0007623: circadian rhythm1.71E-02
147GO:0009718: anthocyanin-containing compound biosynthetic process1.84E-02
148GO:0009725: response to hormone1.84E-02
149GO:0006807: nitrogen compound metabolic process1.84E-02
150GO:0034605: cellular response to heat2.00E-02
151GO:0006541: glutamine metabolic process2.00E-02
152GO:0010020: chloroplast fission2.00E-02
153GO:0019253: reductive pentose-phosphate cycle2.00E-02
154GO:0090351: seedling development2.17E-02
155GO:0006071: glycerol metabolic process2.35E-02
156GO:0031347: regulation of defense response2.52E-02
157GO:0042538: hyperosmotic salinity response2.61E-02
158GO:0010073: meristem maintenance2.71E-02
159GO:0006825: copper ion transport2.71E-02
160GO:0051302: regulation of cell division2.71E-02
161GO:0051260: protein homooligomerization2.90E-02
162GO:0031408: oxylipin biosynthetic process2.90E-02
163GO:0051321: meiotic cell cycle2.90E-02
164GO:0006366: transcription from RNA polymerase II promoter2.90E-02
165GO:0080092: regulation of pollen tube growth3.09E-02
166GO:2000022: regulation of jasmonic acid mediated signaling pathway3.09E-02
167GO:0006417: regulation of translation3.11E-02
168GO:0010227: floral organ abscission3.29E-02
169GO:0006817: phosphate ion transport3.49E-02
170GO:0009306: protein secretion3.49E-02
171GO:0009793: embryo development ending in seed dormancy3.86E-02
172GO:0010118: stomatal movement3.91E-02
173GO:0042335: cuticle development3.91E-02
174GO:0006662: glycerol ether metabolic process4.12E-02
175GO:0006814: sodium ion transport4.34E-02
176GO:0007059: chromosome segregation4.34E-02
177GO:0009646: response to absence of light4.34E-02
178GO:0019252: starch biosynthetic process4.56E-02
179GO:0000302: response to reactive oxygen species4.78E-02
180GO:0010193: response to ozone4.78E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0015284: fructose uniporter activity0.00E+00
3GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
4GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
5GO:0010307: acetylglutamate kinase regulator activity0.00E+00
6GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
7GO:0008115: sarcosine oxidase activity0.00E+00
8GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0016491: oxidoreductase activity1.03E-05
13GO:0004180: carboxypeptidase activity3.26E-05
14GO:0004848: ureidoglycolate hydrolase activity3.26E-05
15GO:0016851: magnesium chelatase activity7.03E-05
16GO:0048038: quinone binding9.53E-05
17GO:0001053: plastid sigma factor activity1.23E-04
18GO:0016987: sigma factor activity1.23E-04
19GO:0004559: alpha-mannosidase activity3.59E-04
20GO:0019899: enzyme binding4.62E-04
21GO:0003879: ATP phosphoribosyltransferase activity4.64E-04
22GO:0030941: chloroplast targeting sequence binding4.64E-04
23GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.64E-04
24GO:0004485: methylcrotonoyl-CoA carboxylase activity4.64E-04
25GO:0035671: enone reductase activity4.64E-04
26GO:0046906: tetrapyrrole binding4.64E-04
27GO:0004824: lysine-tRNA ligase activity4.64E-04
28GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity4.64E-04
29GO:0004856: xylulokinase activity4.64E-04
30GO:0016783: sulfurtransferase activity4.64E-04
31GO:0008242: omega peptidase activity4.64E-04
32GO:0004325: ferrochelatase activity4.64E-04
33GO:0051996: squalene synthase activity4.64E-04
34GO:0004830: tryptophan-tRNA ligase activity4.64E-04
35GO:0004047: aminomethyltransferase activity1.00E-03
36GO:0033201: alpha-1,4-glucan synthase activity1.00E-03
37GO:0005353: fructose transmembrane transporter activity1.00E-03
38GO:0034722: gamma-glutamyl-peptidase activity1.00E-03
39GO:0004450: isocitrate dehydrogenase (NADP+) activity1.00E-03
40GO:0004046: aminoacylase activity1.00E-03
41GO:0003988: acetyl-CoA C-acyltransferase activity1.00E-03
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.00E-03
43GO:0003862: 3-isopropylmalate dehydrogenase activity1.00E-03
44GO:0015367: oxoglutarate:malate antiporter activity1.00E-03
45GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.63E-03
46GO:0010277: chlorophyllide a oxygenase [overall] activity1.63E-03
47GO:0046524: sucrose-phosphate synthase activity1.63E-03
48GO:0004373: glycogen (starch) synthase activity1.63E-03
49GO:0003913: DNA photolyase activity1.63E-03
50GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.63E-03
51GO:0032947: protein complex scaffold1.63E-03
52GO:0050307: sucrose-phosphate phosphatase activity1.63E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.63E-03
54GO:0004075: biotin carboxylase activity1.63E-03
55GO:0000287: magnesium ion binding1.83E-03
56GO:0008236: serine-type peptidase activity1.85E-03
57GO:0005506: iron ion binding2.25E-03
58GO:0047627: adenylylsulfatase activity2.37E-03
59GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.37E-03
60GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.37E-03
61GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.37E-03
62GO:0000254: C-4 methylsterol oxidase activity2.37E-03
63GO:0048027: mRNA 5'-UTR binding2.37E-03
64GO:0004792: thiosulfate sulfurtransferase activity2.37E-03
65GO:0004416: hydroxyacylglutathione hydrolase activity2.37E-03
66GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.37E-03
67GO:0009882: blue light photoreceptor activity2.37E-03
68GO:0005319: lipid transporter activity3.18E-03
69GO:0051861: glycolipid binding3.18E-03
70GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.18E-03
71GO:0043015: gamma-tubulin binding3.18E-03
72GO:0009011: starch synthase activity3.18E-03
73GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor3.18E-03
74GO:0043495: protein anchor3.18E-03
75GO:0008891: glycolate oxidase activity3.18E-03
76GO:0004176: ATP-dependent peptidase activity3.28E-03
77GO:0022891: substrate-specific transmembrane transporter activity3.92E-03
78GO:0051011: microtubule minus-end binding4.08E-03
79GO:0004623: phospholipase A2 activity4.08E-03
80GO:0016773: phosphotransferase activity, alcohol group as acceptor4.08E-03
81GO:0004812: aminoacyl-tRNA ligase activity4.62E-03
82GO:0000293: ferric-chelate reductase activity5.05E-03
83GO:0004784: superoxide dismutase activity5.05E-03
84GO:0008080: N-acetyltransferase activity5.39E-03
85GO:0010181: FMN binding5.80E-03
86GO:0016157: sucrose synthase activity6.09E-03
87GO:0015631: tubulin binding6.09E-03
88GO:0016621: cinnamoyl-CoA reductase activity7.20E-03
89GO:0008237: metallopeptidase activity8.60E-03
90GO:0005375: copper ion transmembrane transporter activity9.63E-03
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.63E-03
92GO:0016168: chlorophyll binding1.02E-02
93GO:0008233: peptidase activity1.04E-02
94GO:0008889: glycerophosphodiester phosphodiesterase activity1.09E-02
95GO:0071949: FAD binding1.09E-02
96GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.17E-02
97GO:0016844: strictosidine synthase activity1.23E-02
98GO:0005381: iron ion transmembrane transporter activity1.23E-02
99GO:0045309: protein phosphorylated amino acid binding1.23E-02
100GO:0004222: metalloendopeptidase activity1.40E-02
101GO:0050897: cobalt ion binding1.47E-02
102GO:0005089: Rho guanyl-nucleotide exchange factor activity1.52E-02
103GO:0019904: protein domain specific binding1.52E-02
104GO:0004129: cytochrome-c oxidase activity1.52E-02
105GO:0031072: heat shock protein binding1.84E-02
106GO:0000155: phosphorelay sensor kinase activity1.84E-02
107GO:0015266: protein channel activity1.84E-02
108GO:0005315: inorganic phosphate transmembrane transporter activity1.84E-02
109GO:0003924: GTPase activity1.92E-02
110GO:0051119: sugar transmembrane transporter activity2.17E-02
111GO:0051537: 2 iron, 2 sulfur cluster binding2.25E-02
112GO:0042802: identical protein binding2.31E-02
113GO:0051287: NAD binding2.52E-02
114GO:0051536: iron-sulfur cluster binding2.53E-02
115GO:0001046: core promoter sequence-specific DNA binding2.53E-02
116GO:0003714: transcription corepressor activity2.53E-02
117GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.80E-02
118GO:0003777: microtubule motor activity3.11E-02
119GO:0003727: single-stranded RNA binding3.49E-02
120GO:0047134: protein-disulfide reductase activity3.70E-02
121GO:0004791: thioredoxin-disulfide reductase activity4.34E-02
122GO:0016853: isomerase activity4.34E-02
123GO:0050662: coenzyme binding4.34E-02
124GO:0004872: receptor activity4.56E-02
125GO:0016762: xyloglucan:xyloglucosyl transferase activity4.78E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast8.87E-44
2GO:0009535: chloroplast thylakoid membrane3.29E-20
3GO:0009941: chloroplast envelope1.67E-08
4GO:0031969: chloroplast membrane2.57E-08
5GO:0009570: chloroplast stroma2.79E-07
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.50E-05
7GO:0030286: dynein complex1.23E-04
8GO:0055035: plastid thylakoid membrane1.89E-04
9GO:0042651: thylakoid membrane3.12E-04
10GO:0009706: chloroplast inner membrane3.27E-04
11GO:0031972: chloroplast intermembrane space4.64E-04
12GO:0009536: plastid4.64E-04
13GO:0009534: chloroplast thylakoid6.78E-04
14GO:0080085: signal recognition particle, chloroplast targeting1.00E-03
15GO:0008274: gamma-tubulin ring complex1.00E-03
16GO:0045254: pyruvate dehydrogenase complex1.00E-03
17GO:0009528: plastid inner membrane1.63E-03
18GO:0033281: TAT protein transport complex1.63E-03
19GO:0010007: magnesium chelatase complex1.63E-03
20GO:0009707: chloroplast outer membrane1.97E-03
21GO:0000923: equatorial microtubule organizing center2.37E-03
22GO:0005875: microtubule associated complex2.44E-03
23GO:0009527: plastid outer membrane3.18E-03
24GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)3.18E-03
25GO:0009526: plastid envelope3.18E-03
26GO:0031977: thylakoid lumen3.33E-03
27GO:0005759: mitochondrial matrix3.42E-03
28GO:0005777: peroxisome6.20E-03
29GO:0009523: photosystem II6.23E-03
30GO:0005747: mitochondrial respiratory chain complex I6.98E-03
31GO:0031359: integral component of chloroplast outer membrane7.20E-03
32GO:0005739: mitochondrion7.36E-03
33GO:0009501: amyloplast8.39E-03
34GO:0010319: stromule8.60E-03
35GO:0009295: nucleoid8.60E-03
36GO:0046930: pore complex9.63E-03
37GO:0009539: photosystem II reaction center9.63E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.63E-03
39GO:0000922: spindle pole1.09E-02
40GO:0042644: chloroplast nucleoid1.09E-02
41GO:0009543: chloroplast thylakoid lumen1.13E-02
42GO:0005773: vacuole1.16E-02
43GO:0005623: cell1.17E-02
44GO:0016324: apical plasma membrane1.37E-02
45GO:0016021: integral component of membrane1.60E-02
46GO:0009508: plastid chromosome1.84E-02
47GO:0043234: protein complex2.35E-02
48GO:0031966: mitochondrial membrane2.61E-02
49GO:0009654: photosystem II oxygen evolving complex2.71E-02
50GO:0045271: respiratory chain complex I2.71E-02
51GO:0005744: mitochondrial inner membrane presequence translocase complex3.49E-02
52GO:0010287: plastoglobule4.72E-02
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Gene type



Gene DE type