GO Enrichment Analysis of Co-expressed Genes with
AT3G17465
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 2 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 3 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0006364: rRNA processing | 3.13E-17 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.67E-07 |
| 9 | GO:0010162: seed dormancy process | 2.25E-06 |
| 10 | GO:0042273: ribosomal large subunit biogenesis | 9.64E-06 |
| 11 | GO:0010501: RNA secondary structure unwinding | 2.99E-05 |
| 12 | GO:0009553: embryo sac development | 4.83E-05 |
| 13 | GO:0006169: adenosine salvage | 1.04E-04 |
| 14 | GO:0031120: snRNA pseudouridine synthesis | 1.04E-04 |
| 15 | GO:0031118: rRNA pseudouridine synthesis | 1.04E-04 |
| 16 | GO:0006177: GMP biosynthetic process | 1.04E-04 |
| 17 | GO:0000494: box C/D snoRNA 3'-end processing | 1.04E-04 |
| 18 | GO:0043985: histone H4-R3 methylation | 1.04E-04 |
| 19 | GO:1990258: histone glutamine methylation | 1.04E-04 |
| 20 | GO:0009451: RNA modification | 1.44E-04 |
| 21 | GO:0045041: protein import into mitochondrial intermembrane space | 2.44E-04 |
| 22 | GO:0034470: ncRNA processing | 2.44E-04 |
| 23 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.40E-04 |
| 24 | GO:0007005: mitochondrion organization | 4.52E-04 |
| 25 | GO:0009294: DNA mediated transformation | 4.92E-04 |
| 26 | GO:0007276: gamete generation | 5.82E-04 |
| 27 | GO:0009855: determination of bilateral symmetry | 5.82E-04 |
| 28 | GO:0051131: chaperone-mediated protein complex assembly | 5.82E-04 |
| 29 | GO:0006412: translation | 6.61E-04 |
| 30 | GO:0010197: polar nucleus fusion | 6.70E-04 |
| 31 | GO:0000460: maturation of 5.8S rRNA | 7.73E-04 |
| 32 | GO:0006479: protein methylation | 7.73E-04 |
| 33 | GO:1900864: mitochondrial RNA modification | 7.73E-04 |
| 34 | GO:0042274: ribosomal small subunit biogenesis | 7.73E-04 |
| 35 | GO:0044209: AMP salvage | 9.77E-04 |
| 36 | GO:0000380: alternative mRNA splicing, via spliceosome | 9.77E-04 |
| 37 | GO:0031167: rRNA methylation | 9.77E-04 |
| 38 | GO:0000470: maturation of LSU-rRNA | 1.19E-03 |
| 39 | GO:0016554: cytidine to uridine editing | 1.19E-03 |
| 40 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.19E-03 |
| 41 | GO:0000741: karyogamy | 1.19E-03 |
| 42 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.43E-03 |
| 43 | GO:0006458: 'de novo' protein folding | 1.43E-03 |
| 44 | GO:0016444: somatic cell DNA recombination | 1.43E-03 |
| 45 | GO:0042026: protein refolding | 1.43E-03 |
| 46 | GO:0006400: tRNA modification | 1.67E-03 |
| 47 | GO:0080186: developmental vegetative growth | 1.67E-03 |
| 48 | GO:0009396: folic acid-containing compound biosynthetic process | 1.67E-03 |
| 49 | GO:0001510: RNA methylation | 2.21E-03 |
| 50 | GO:0006261: DNA-dependent DNA replication | 2.21E-03 |
| 51 | GO:0007338: single fertilization | 2.49E-03 |
| 52 | GO:0000387: spliceosomal snRNP assembly | 2.79E-03 |
| 53 | GO:0035999: tetrahydrofolate interconversion | 2.79E-03 |
| 54 | GO:1900865: chloroplast RNA modification | 2.79E-03 |
| 55 | GO:0030422: production of siRNA involved in RNA interference | 3.10E-03 |
| 56 | GO:0032259: methylation | 3.95E-03 |
| 57 | GO:0016569: covalent chromatin modification | 4.37E-03 |
| 58 | GO:0006396: RNA processing | 4.77E-03 |
| 59 | GO:0010030: positive regulation of seed germination | 4.80E-03 |
| 60 | GO:0000027: ribosomal large subunit assembly | 5.56E-03 |
| 61 | GO:0051302: regulation of cell division | 5.95E-03 |
| 62 | GO:0006334: nucleosome assembly | 6.35E-03 |
| 63 | GO:0061077: chaperone-mediated protein folding | 6.35E-03 |
| 64 | GO:0009790: embryo development | 6.76E-03 |
| 65 | GO:0006730: one-carbon metabolic process | 6.76E-03 |
| 66 | GO:0009561: megagametogenesis | 7.61E-03 |
| 67 | GO:0070417: cellular response to cold | 8.05E-03 |
| 68 | GO:0008033: tRNA processing | 8.49E-03 |
| 69 | GO:0000413: protein peptidyl-prolyl isomerization | 8.49E-03 |
| 70 | GO:0009960: endosperm development | 8.95E-03 |
| 71 | GO:0046686: response to cadmium ion | 9.98E-03 |
| 72 | GO:0080156: mitochondrial mRNA modification | 1.04E-02 |
| 73 | GO:0016032: viral process | 1.09E-02 |
| 74 | GO:0009567: double fertilization forming a zygote and endosperm | 1.19E-02 |
| 75 | GO:0006457: protein folding | 1.20E-02 |
| 76 | GO:0042254: ribosome biogenesis | 1.26E-02 |
| 77 | GO:0016049: cell growth | 1.57E-02 |
| 78 | GO:0010311: lateral root formation | 1.68E-02 |
| 79 | GO:0048527: lateral root development | 1.80E-02 |
| 80 | GO:0000724: double-strand break repair via homologous recombination | 1.86E-02 |
| 81 | GO:0009853: photorespiration | 1.92E-02 |
| 82 | GO:0006099: tricarboxylic acid cycle | 1.98E-02 |
| 83 | GO:0008283: cell proliferation | 2.30E-02 |
| 84 | GO:0000154: rRNA modification | 2.50E-02 |
| 85 | GO:0009555: pollen development | 4.03E-02 |
| 86 | GO:0000398: mRNA splicing, via spliceosome | 4.05E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0003723: RNA binding | 4.76E-18 |
| 4 | GO:0000166: nucleotide binding | 3.19E-07 |
| 5 | GO:0030515: snoRNA binding | 3.74E-07 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 5.67E-07 |
| 7 | GO:0004004: ATP-dependent RNA helicase activity | 3.94E-06 |
| 8 | GO:0004407: histone deacetylase activity | 1.06E-05 |
| 9 | GO:0003735: structural constituent of ribosome | 4.67E-05 |
| 10 | GO:0008026: ATP-dependent helicase activity | 5.71E-05 |
| 11 | GO:0048037: cofactor binding | 1.04E-04 |
| 12 | GO:1990259: histone-glutamine methyltransferase activity | 1.04E-04 |
| 13 | GO:0042134: rRNA primary transcript binding | 1.04E-04 |
| 14 | GO:0004001: adenosine kinase activity | 1.04E-04 |
| 15 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 2.44E-04 |
| 16 | GO:0003938: IMP dehydrogenase activity | 2.44E-04 |
| 17 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 2.44E-04 |
| 18 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 2.44E-04 |
| 19 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 2.44E-04 |
| 20 | GO:0008168: methyltransferase activity | 2.72E-04 |
| 21 | GO:0008649: rRNA methyltransferase activity | 4.05E-04 |
| 22 | GO:0004519: endonuclease activity | 8.39E-04 |
| 23 | GO:0003689: DNA clamp loader activity | 9.77E-04 |
| 24 | GO:0050897: cobalt ion binding | 1.73E-03 |
| 25 | GO:0003746: translation elongation factor activity | 1.90E-03 |
| 26 | GO:0008173: RNA methyltransferase activity | 2.21E-03 |
| 27 | GO:0001054: RNA polymerase I activity | 3.42E-03 |
| 28 | GO:0044183: protein binding involved in protein folding | 3.42E-03 |
| 29 | GO:0001056: RNA polymerase III activity | 3.75E-03 |
| 30 | GO:0000049: tRNA binding | 3.75E-03 |
| 31 | GO:0009982: pseudouridine synthase activity | 4.09E-03 |
| 32 | GO:0000175: 3'-5'-exoribonuclease activity | 4.09E-03 |
| 33 | GO:0016787: hydrolase activity | 4.47E-03 |
| 34 | GO:0051082: unfolded protein binding | 4.64E-03 |
| 35 | GO:0019843: rRNA binding | 5.80E-03 |
| 36 | GO:0004527: exonuclease activity | 8.95E-03 |
| 37 | GO:0003729: mRNA binding | 9.31E-03 |
| 38 | GO:0005507: copper ion binding | 1.35E-02 |
| 39 | GO:0003676: nucleic acid binding | 1.39E-02 |
| 40 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.98E-02 |
| 41 | GO:0042393: histone binding | 2.11E-02 |
| 42 | GO:0003924: GTPase activity | 2.28E-02 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.57E-02 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.84E-02 |
| 45 | GO:0016887: ATPase activity | 3.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0005730: nucleolus | 5.24E-27 |
| 3 | GO:0032040: small-subunit processome | 1.14E-12 |
| 4 | GO:0030687: preribosome, large subunit precursor | 3.74E-07 |
| 5 | GO:0070545: PeBoW complex | 5.67E-07 |
| 6 | GO:0031428: box C/D snoRNP complex | 2.42E-05 |
| 7 | GO:0015030: Cajal body | 1.15E-04 |
| 8 | GO:0005759: mitochondrial matrix | 1.18E-04 |
| 9 | GO:0005840: ribosome | 2.81E-04 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.35E-04 |
| 11 | GO:0005634: nucleus | 3.53E-04 |
| 12 | GO:0015935: small ribosomal subunit | 4.13E-04 |
| 13 | GO:0005834: heterotrimeric G-protein complex | 4.90E-04 |
| 14 | GO:0031429: box H/ACA snoRNP complex | 5.82E-04 |
| 15 | GO:0005739: mitochondrion | 6.09E-04 |
| 16 | GO:0005663: DNA replication factor C complex | 7.73E-04 |
| 17 | GO:0000178: exosome (RNase complex) | 9.77E-04 |
| 18 | GO:0005618: cell wall | 1.18E-03 |
| 19 | GO:0016363: nuclear matrix | 1.43E-03 |
| 20 | GO:0022627: cytosolic small ribosomal subunit | 1.60E-03 |
| 21 | GO:0022626: cytosolic ribosome | 1.63E-03 |
| 22 | GO:0034399: nuclear periphery | 1.93E-03 |
| 23 | GO:0005763: mitochondrial small ribosomal subunit | 2.49E-03 |
| 24 | GO:0005736: DNA-directed RNA polymerase I complex | 2.49E-03 |
| 25 | GO:0005666: DNA-directed RNA polymerase III complex | 2.79E-03 |
| 26 | GO:0005774: vacuolar membrane | 3.07E-03 |
| 27 | GO:0005747: mitochondrial respiratory chain complex I | 3.98E-03 |
| 28 | GO:0019013: viral nucleocapsid | 4.09E-03 |
| 29 | GO:0005829: cytosol | 4.30E-03 |
| 30 | GO:0005654: nucleoplasm | 5.65E-03 |
| 31 | GO:0019898: extrinsic component of membrane | 9.90E-03 |
| 32 | GO:0016592: mediator complex | 1.09E-02 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 1.35E-02 |
| 34 | GO:0022625: cytosolic large ribosomal subunit | 1.62E-02 |
| 35 | GO:0005681: spliceosomal complex | 3.20E-02 |
| 36 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.89E-02 |
| 37 | GO:0009543: chloroplast thylakoid lumen | 4.29E-02 |