co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G17170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0009249: protein lipoylation	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0009106: lipoate metabolic process	0.00E+00
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.31E-07
7	GO:0009451: RNA modification	1.87E-05
8	GO:0034971: histone H3-R17 methylation	4.60E-05
9	GO:0071454: cellular response to anoxia	4.60E-05
10	GO:0034970: histone H3-R2 methylation	4.60E-05
11	GO:0034972: histone H3-R26 methylation	4.60E-05
12	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.13E-04
13	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	1.13E-04
14	GO:0080153: negative regulation of reductive pentose-phosphate cycle	1.13E-04
15	GO:0016126: sterol biosynthetic process	4.15E-04
16	GO:0009107: lipoate biosynthetic process	4.88E-04
17	GO:0016123: xanthophyll biosynthetic process	4.88E-04
18	GO:0009658: chloroplast organization	5.05E-04
19	GO:0042793: transcription from plastid promoter	5.98E-04
20	GO:0000741: karyogamy	5.98E-04
21	GO:0017148: negative regulation of translation	7.13E-04
22	GO:0009704: de-etiolation	9.57E-04
23	GO:0042255: ribosome assembly	9.57E-04
24	GO:0006353: DNA-templated transcription, termination	9.57E-04
25	GO:0019430: removal of superoxide radicals	1.09E-03
26	GO:0010100: negative regulation of photomorphogenesis	1.09E-03
27	GO:0022900: electron transport chain	1.09E-03
28	GO:0009098: leucine biosynthetic process	1.36E-03
29	GO:0045036: protein targeting to chloroplast	1.51E-03
30	GO:0045037: protein import into chloroplast stroma	1.81E-03
31	GO:0010207: photosystem II assembly	2.14E-03
32	GO:0034605: cellular response to heat	2.14E-03
33	GO:0019253: reductive pentose-phosphate cycle	2.14E-03
34	GO:0006289: nucleotide-excision repair	2.67E-03
35	GO:0070417: cellular response to cold	3.83E-03
36	GO:0008033: tRNA processing	4.04E-03
37	GO:0010501: RNA secondary structure unwinding	4.04E-03
38	GO:0009958: positive gravitropism	4.25E-03
39	GO:0010197: polar nucleus fusion	4.25E-03
40	GO:0032502: developmental process	5.13E-03
41	GO:0000910: cytokinesis	6.08E-03
42	GO:0006281: DNA repair	7.68E-03
43	GO:0009744: response to sucrose	1.07E-02
44	GO:0006260: DNA replication	1.23E-02
45	GO:0009585: red, far-red light phototransduction	1.32E-02
46	GO:0051603: proteolysis involved in cellular protein catabolic process	1.35E-02
47	GO:0009909: regulation of flower development	1.42E-02
48	GO:0006417: regulation of translation	1.42E-02
49	GO:0006396: RNA processing	1.73E-02
50	GO:0009790: embryo development	2.22E-02
51	GO:0010228: vegetative to reproductive phase transition of meristem	2.59E-02
52	GO:0008380: RNA splicing	2.84E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
3	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.13E-04
4	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	1.13E-04
5	GO:0017118: lipoyltransferase activity	1.13E-04
6	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	1.13E-04
7	GO:0016415: octanoyltransferase activity	1.13E-04
8	GO:0015929: hexosaminidase activity	1.13E-04
9	GO:0004563: beta-N-acetylhexosaminidase activity	1.13E-04
10	GO:0035241: protein-arginine omega-N monomethyltransferase activity	1.13E-04
11	GO:0004519: endonuclease activity	1.48E-04
12	GO:0008469: histone-arginine N-methyltransferase activity	1.95E-04
13	GO:0004848: ureidoglycolate hydrolase activity	1.95E-04
14	GO:0043023: ribosomal large subunit binding	2.85E-04
15	GO:0000254: C-4 methylsterol oxidase activity	2.85E-04
16	GO:0016851: magnesium chelatase activity	2.85E-04
17	GO:0003723: RNA binding	4.51E-04
18	GO:0004784: superoxide dismutase activity	5.98E-04
19	GO:0004525: ribonuclease III activity	9.57E-04
20	GO:0003690: double-stranded DNA binding	1.18E-03
21	GO:0008026: ATP-dependent helicase activity	1.70E-03
22	GO:0003887: DNA-directed DNA polymerase activity	2.49E-03
23	GO:0035251: UDP-glucosyltransferase activity	3.04E-03
24	GO:0003727: single-stranded RNA binding	3.63E-03
25	GO:0004518: nuclease activity	5.13E-03
26	GO:0004004: ATP-dependent RNA helicase activity	7.08E-03
27	GO:0003697: single-stranded DNA binding	8.96E-03
28	GO:0051539: 4 iron, 4 sulfur cluster binding	9.82E-03
29	GO:0004185: serine-type carboxypeptidase activity	1.07E-02
30	GO:0051537: 2 iron, 2 sulfur cluster binding	1.13E-02
31	GO:0051287: NAD binding	1.23E-02
32	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.52E-02
33	GO:0019843: rRNA binding	1.99E-02
34	GO:0008565: protein transporter activity	2.26E-02
35	GO:0005506: iron ion binding	2.73E-02
36	GO:0003824: catalytic activity	3.04E-02
37	GO:0008168: methyltransferase activity	3.32E-02
38	GO:0000287: magnesium ion binding	3.37E-02
39	GO:0046982: protein heterodimerization activity	3.37E-02
40	GO:0016491: oxidoreductase activity	3.65E-02
41	GO:0003729: mRNA binding	4.12E-02
42	GO:0042803: protein homodimerization activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.90E-13
2	GO:0009570: chloroplast stroma	5.77E-05
3	GO:0009535: chloroplast thylakoid membrane	1.28E-04
4	GO:0042646: plastid nucleoid	2.85E-04
5	GO:0009295: nucleoid	3.70E-04
6	GO:0009840: chloroplastic endopeptidase Clp complex	7.13E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.22E-03
8	GO:0042644: chloroplast nucleoid	1.22E-03
9	GO:0009508: plastid chromosome	1.98E-03
10	GO:0005623: cell	2.05E-03
11	GO:0043234: protein complex	2.49E-03
12	GO:0042651: thylakoid membrane	2.85E-03
13	GO:0015935: small ribosomal subunit	3.04E-03
14	GO:0043231: intracellular membrane-bounded organelle	8.47E-03
15	GO:0009579: thylakoid	1.64E-02
16	GO:0009534: chloroplast thylakoid	1.65E-02
17	GO:0009706: chloroplast inner membrane	1.70E-02
18	GO:0005622: intracellular	2.43E-02
19	GO:0009536: plastid	3.40E-02