GO Enrichment Analysis of Co-expressed Genes with
AT3G16990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046292: formaldehyde metabolic process | 0.00E+00 |
| 2 | GO:0016093: polyprenol metabolic process | 0.00E+00 |
| 3 | GO:0006721: terpenoid metabolic process | 0.00E+00 |
| 4 | GO:0006069: ethanol oxidation | 0.00E+00 |
| 5 | GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.00E+00 |
| 6 | GO:0006592: ornithine biosynthetic process | 0.00E+00 |
| 7 | GO:0055114: oxidation-reduction process | 1.78E-06 |
| 8 | GO:0016487: farnesol metabolic process | 6.74E-05 |
| 9 | GO:0009240: isopentenyl diphosphate biosynthetic process | 6.74E-05 |
| 10 | GO:0031468: nuclear envelope reassembly | 6.74E-05 |
| 11 | GO:0006835: dicarboxylic acid transport | 6.74E-05 |
| 12 | GO:0006212: uracil catabolic process | 1.62E-04 |
| 13 | GO:0019483: beta-alanine biosynthetic process | 1.62E-04 |
| 14 | GO:0019441: tryptophan catabolic process to kynurenine | 1.62E-04 |
| 15 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 1.62E-04 |
| 16 | GO:0043617: cellular response to sucrose starvation | 2.75E-04 |
| 17 | GO:0046417: chorismate metabolic process | 2.75E-04 |
| 18 | GO:0044746: amino acid transmembrane export | 2.75E-04 |
| 19 | GO:0035067: negative regulation of histone acetylation | 3.98E-04 |
| 20 | GO:0006516: glycoprotein catabolic process | 3.98E-04 |
| 21 | GO:1901332: negative regulation of lateral root development | 3.98E-04 |
| 22 | GO:0032366: intracellular sterol transport | 5.32E-04 |
| 23 | GO:0031507: heterochromatin assembly | 5.32E-04 |
| 24 | GO:0015743: malate transport | 5.32E-04 |
| 25 | GO:0009615: response to virus | 6.71E-04 |
| 26 | GO:0018344: protein geranylgeranylation | 6.73E-04 |
| 27 | GO:0006555: methionine metabolic process | 8.23E-04 |
| 28 | GO:0019509: L-methionine salvage from methylthioadenosine | 9.79E-04 |
| 29 | GO:0071446: cellular response to salicylic acid stimulus | 1.14E-03 |
| 30 | GO:0050790: regulation of catalytic activity | 1.14E-03 |
| 31 | GO:0010044: response to aluminum ion | 1.14E-03 |
| 32 | GO:0000028: ribosomal small subunit assembly | 1.32E-03 |
| 33 | GO:0044550: secondary metabolite biosynthetic process | 1.36E-03 |
| 34 | GO:0006002: fructose 6-phosphate metabolic process | 1.50E-03 |
| 35 | GO:0006526: arginine biosynthetic process | 1.50E-03 |
| 36 | GO:0043562: cellular response to nitrogen levels | 1.50E-03 |
| 37 | GO:0009821: alkaloid biosynthetic process | 1.69E-03 |
| 38 | GO:0051453: regulation of intracellular pH | 1.89E-03 |
| 39 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.91E-03 |
| 40 | GO:0009751: response to salicylic acid | 1.96E-03 |
| 41 | GO:0006896: Golgi to vacuole transport | 2.10E-03 |
| 42 | GO:0006325: chromatin organization | 2.10E-03 |
| 43 | GO:0000103: sulfate assimilation | 2.10E-03 |
| 44 | GO:0043069: negative regulation of programmed cell death | 2.10E-03 |
| 45 | GO:0048316: seed development | 2.25E-03 |
| 46 | GO:0009073: aromatic amino acid family biosynthetic process | 2.31E-03 |
| 47 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.31E-03 |
| 48 | GO:0006378: mRNA polyadenylation | 2.31E-03 |
| 49 | GO:0016569: covalent chromatin modification | 2.46E-03 |
| 50 | GO:0002213: defense response to insect | 2.53E-03 |
| 51 | GO:0006807: nitrogen compound metabolic process | 2.76E-03 |
| 52 | GO:2000028: regulation of photoperiodism, flowering | 2.76E-03 |
| 53 | GO:0007034: vacuolar transport | 2.99E-03 |
| 54 | GO:0042343: indole glucosinolate metabolic process | 3.23E-03 |
| 55 | GO:0007030: Golgi organization | 3.23E-03 |
| 56 | GO:0010053: root epidermal cell differentiation | 3.23E-03 |
| 57 | GO:0006338: chromatin remodeling | 3.73E-03 |
| 58 | GO:0006487: protein N-linked glycosylation | 3.73E-03 |
| 59 | GO:0008299: isoprenoid biosynthetic process | 3.99E-03 |
| 60 | GO:0051302: regulation of cell division | 3.99E-03 |
| 61 | GO:0098542: defense response to other organism | 4.26E-03 |
| 62 | GO:0019748: secondary metabolic process | 4.53E-03 |
| 63 | GO:0042391: regulation of membrane potential | 5.68E-03 |
| 64 | GO:0034220: ion transmembrane transport | 5.68E-03 |
| 65 | GO:0006662: glycerol ether metabolic process | 5.98E-03 |
| 66 | GO:0006342: chromatin silencing | 5.98E-03 |
| 67 | GO:0010268: brassinosteroid homeostasis | 5.98E-03 |
| 68 | GO:0061025: membrane fusion | 6.28E-03 |
| 69 | GO:0006814: sodium ion transport | 6.28E-03 |
| 70 | GO:0009646: response to absence of light | 6.28E-03 |
| 71 | GO:0006623: protein targeting to vacuole | 6.60E-03 |
| 72 | GO:0009791: post-embryonic development | 6.60E-03 |
| 73 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 6.91E-03 |
| 74 | GO:0016132: brassinosteroid biosynthetic process | 6.91E-03 |
| 75 | GO:0016125: sterol metabolic process | 7.90E-03 |
| 76 | GO:0010286: heat acclimation | 8.24E-03 |
| 77 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 9.29E-03 |
| 78 | GO:0009627: systemic acquired resistance | 9.65E-03 |
| 79 | GO:0015995: chlorophyll biosynthetic process | 1.00E-02 |
| 80 | GO:0045454: cell redox homeostasis | 1.03E-02 |
| 81 | GO:0008219: cell death | 1.08E-02 |
| 82 | GO:0010311: lateral root formation | 1.11E-02 |
| 83 | GO:0006508: proteolysis | 1.14E-02 |
| 84 | GO:0006811: ion transport | 1.15E-02 |
| 85 | GO:0006499: N-terminal protein myristoylation | 1.15E-02 |
| 86 | GO:0010043: response to zinc ion | 1.19E-02 |
| 87 | GO:0007568: aging | 1.19E-02 |
| 88 | GO:0009853: photorespiration | 1.27E-02 |
| 89 | GO:0034599: cellular response to oxidative stress | 1.31E-02 |
| 90 | GO:0006099: tricarboxylic acid cycle | 1.31E-02 |
| 91 | GO:0006631: fatty acid metabolic process | 1.44E-02 |
| 92 | GO:0009744: response to sucrose | 1.52E-02 |
| 93 | GO:0005975: carbohydrate metabolic process | 1.71E-02 |
| 94 | GO:0006486: protein glycosylation | 1.88E-02 |
| 95 | GO:0006096: glycolytic process | 2.12E-02 |
| 96 | GO:0009626: plant-type hypersensitive response | 2.22E-02 |
| 97 | GO:0009620: response to fungus | 2.26E-02 |
| 98 | GO:0018105: peptidyl-serine phosphorylation | 2.47E-02 |
| 99 | GO:0009058: biosynthetic process | 2.94E-02 |
| 100 | GO:0042744: hydrogen peroxide catabolic process | 3.11E-02 |
| 101 | GO:0010150: leaf senescence | 3.57E-02 |
| 102 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.86E-02 |
| 103 | GO:0007166: cell surface receptor signaling pathway | 3.92E-02 |
| 104 | GO:0050832: defense response to fungus | 3.95E-02 |
| 105 | GO:0071555: cell wall organization | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003837: beta-ureidopropionase activity | 0.00E+00 |
| 2 | GO:0009940: amino-terminal vacuolar sorting propeptide binding | 0.00E+00 |
| 3 | GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity | 0.00E+00 |
| 4 | GO:0017153: sodium:dicarboxylate symporter activity | 0.00E+00 |
| 5 | GO:0047886: farnesol dehydrogenase activity | 0.00E+00 |
| 6 | GO:0008777: acetylornithine deacetylase activity | 0.00E+00 |
| 7 | GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 8 | GO:0080007: S-nitrosoglutathione reductase activity | 0.00E+00 |
| 9 | GO:0004557: alpha-galactosidase activity | 9.92E-07 |
| 10 | GO:0052692: raffinose alpha-galactosidase activity | 9.92E-07 |
| 11 | GO:0004560: alpha-L-fucosidase activity | 6.74E-05 |
| 12 | GO:0010209: vacuolar sorting signal binding | 6.74E-05 |
| 13 | GO:0004452: isopentenyl-diphosphate delta-isomerase activity | 6.74E-05 |
| 14 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.15E-04 |
| 15 | GO:0004106: chorismate mutase activity | 1.62E-04 |
| 16 | GO:0004061: arylformamidase activity | 1.62E-04 |
| 17 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 2.75E-04 |
| 18 | GO:0004663: Rab geranylgeranyltransferase activity | 2.75E-04 |
| 19 | GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | 2.75E-04 |
| 20 | GO:0015186: L-glutamine transmembrane transporter activity | 3.98E-04 |
| 21 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 3.98E-04 |
| 22 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 3.98E-04 |
| 23 | GO:0005506: iron ion binding | 4.05E-04 |
| 24 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 4.70E-04 |
| 25 | GO:0004197: cysteine-type endopeptidase activity | 5.01E-04 |
| 26 | GO:0004576: oligosaccharyl transferase activity | 5.32E-04 |
| 27 | GO:0004301: epoxide hydrolase activity | 5.32E-04 |
| 28 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 6.73E-04 |
| 29 | GO:0051117: ATPase binding | 8.23E-04 |
| 30 | GO:0005261: cation channel activity | 9.79E-04 |
| 31 | GO:0051920: peroxiredoxin activity | 9.79E-04 |
| 32 | GO:0003872: 6-phosphofructokinase activity | 1.14E-03 |
| 33 | GO:0015140: malate transmembrane transporter activity | 1.14E-03 |
| 34 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.23E-03 |
| 35 | GO:0019825: oxygen binding | 1.23E-03 |
| 36 | GO:0004869: cysteine-type endopeptidase inhibitor activity | 1.32E-03 |
| 37 | GO:0016209: antioxidant activity | 1.32E-03 |
| 38 | GO:0035064: methylated histone binding | 1.32E-03 |
| 39 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 1.69E-03 |
| 40 | GO:0016844: strictosidine synthase activity | 1.89E-03 |
| 41 | GO:0008234: cysteine-type peptidase activity | 2.04E-03 |
| 42 | GO:0004129: cytochrome-c oxidase activity | 2.31E-03 |
| 43 | GO:0046872: metal ion binding | 2.39E-03 |
| 44 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 2.53E-03 |
| 45 | GO:0031072: heat shock protein binding | 2.76E-03 |
| 46 | GO:0030553: cGMP binding | 3.23E-03 |
| 47 | GO:0030552: cAMP binding | 3.23E-03 |
| 48 | GO:0043130: ubiquitin binding | 3.73E-03 |
| 49 | GO:0005216: ion channel activity | 3.99E-03 |
| 50 | GO:0008324: cation transmembrane transporter activity | 3.99E-03 |
| 51 | GO:0020037: heme binding | 4.17E-03 |
| 52 | GO:0047134: protein-disulfide reductase activity | 5.38E-03 |
| 53 | GO:0030551: cyclic nucleotide binding | 5.68E-03 |
| 54 | GO:0005249: voltage-gated potassium channel activity | 5.68E-03 |
| 55 | GO:0004402: histone acetyltransferase activity | 5.68E-03 |
| 56 | GO:0050662: coenzyme binding | 6.28E-03 |
| 57 | GO:0004791: thioredoxin-disulfide reductase activity | 6.28E-03 |
| 58 | GO:0016787: hydrolase activity | 6.63E-03 |
| 59 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.57E-03 |
| 60 | GO:0050660: flavin adenine dinucleotide binding | 8.00E-03 |
| 61 | GO:0008237: metallopeptidase activity | 8.24E-03 |
| 62 | GO:0015250: water channel activity | 8.93E-03 |
| 63 | GO:0051213: dioxygenase activity | 8.93E-03 |
| 64 | GO:0005509: calcium ion binding | 9.09E-03 |
| 65 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 9.65E-03 |
| 66 | GO:0030247: polysaccharide binding | 1.00E-02 |
| 67 | GO:0004683: calmodulin-dependent protein kinase activity | 1.00E-02 |
| 68 | GO:0016491: oxidoreductase activity | 1.43E-02 |
| 69 | GO:0004185: serine-type carboxypeptidase activity | 1.52E-02 |
| 70 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.17E-02 |
| 71 | GO:0051082: unfolded protein binding | 2.42E-02 |
| 72 | GO:0016746: transferase activity, transferring acyl groups | 2.47E-02 |
| 73 | GO:0015035: protein disulfide oxidoreductase activity | 2.47E-02 |
| 74 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.89E-02 |
| 75 | GO:0005507: copper ion binding | 3.21E-02 |
| 76 | GO:0005516: calmodulin binding | 3.39E-02 |
| 77 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.23E-02 |
| 78 | GO:0004601: peroxidase activity | 4.86E-02 |
| 79 | GO:0016788: hydrolase activity, acting on ester bonds | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005773: vacuole | 4.06E-07 |
| 2 | GO:0005764: lysosome | 1.31E-04 |
| 3 | GO:0005829: cytosol | 2.00E-04 |
| 4 | GO:0005747: mitochondrial respiratory chain complex I | 2.19E-04 |
| 5 | GO:0048046: apoplast | 2.53E-04 |
| 6 | GO:0005782: peroxisomal matrix | 2.75E-04 |
| 7 | GO:0005968: Rab-protein geranylgeranyltransferase complex | 3.98E-04 |
| 8 | GO:0005849: mRNA cleavage factor complex | 3.98E-04 |
| 9 | GO:0005759: mitochondrial matrix | 4.86E-04 |
| 10 | GO:0005945: 6-phosphofructokinase complex | 6.73E-04 |
| 11 | GO:0008250: oligosaccharyltransferase complex | 6.73E-04 |
| 12 | GO:0005783: endoplasmic reticulum | 1.10E-03 |
| 13 | GO:0045273: respiratory chain complex II | 1.32E-03 |
| 14 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 1.32E-03 |
| 15 | GO:0005677: chromatin silencing complex | 1.50E-03 |
| 16 | GO:0005763: mitochondrial small ribosomal subunit | 1.69E-03 |
| 17 | GO:0010494: cytoplasmic stress granule | 1.69E-03 |
| 18 | GO:0030665: clathrin-coated vesicle membrane | 1.89E-03 |
| 19 | GO:0017119: Golgi transport complex | 2.10E-03 |
| 20 | GO:0005887: integral component of plasma membrane | 2.93E-03 |
| 21 | GO:0005623: cell | 3.34E-03 |
| 22 | GO:0045271: respiratory chain complex I | 3.99E-03 |
| 23 | GO:0005777: peroxisome | 4.90E-03 |
| 24 | GO:0005615: extracellular space | 5.00E-03 |
| 25 | GO:0005576: extracellular region | 5.19E-03 |
| 26 | GO:0005770: late endosome | 5.98E-03 |
| 27 | GO:0000785: chromatin | 7.24E-03 |
| 28 | GO:0000932: P-body | 8.93E-03 |
| 29 | GO:0000325: plant-type vacuole | 1.19E-02 |
| 30 | GO:0005774: vacuolar membrane | 1.37E-02 |
| 31 | GO:0031902: late endosome membrane | 1.44E-02 |
| 32 | GO:0005789: endoplasmic reticulum membrane | 1.72E-02 |
| 33 | GO:0031966: mitochondrial membrane | 1.79E-02 |
| 34 | GO:0005886: plasma membrane | 2.12E-02 |