co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009268: response to pH	0.00E+00
2	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
3	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
4	GO:0033358: UDP-L-arabinose biosynthetic process	1.60E-08
5	GO:0045227: capsule polysaccharide biosynthetic process	1.60E-08
6	GO:0009699: phenylpropanoid biosynthetic process	4.87E-07
7	GO:0009611: response to wounding	1.68E-06
8	GO:0009225: nucleotide-sugar metabolic process	4.26E-06
9	GO:0006012: galactose metabolic process	1.19E-05
10	GO:0009555: pollen development	2.06E-05
11	GO:0034214: protein hexamerization	8.25E-05
12	GO:0046244: salicylic acid catabolic process	8.25E-05
13	GO:0019567: arabinose biosynthetic process	8.25E-05
14	GO:0002213: defense response to insect	1.33E-04
15	GO:0000266: mitochondrial fission	1.33E-04
16	GO:0009812: flavonoid metabolic process	1.97E-04
17	GO:0048480: stigma development	1.97E-04
18	GO:0015865: purine nucleotide transport	1.97E-04
19	GO:0050688: regulation of defense response to virus	1.97E-04
20	GO:0010581: regulation of starch biosynthetic process	3.29E-04
21	GO:0006065: UDP-glucuronate biosynthetic process	3.29E-04
22	GO:0052546: cell wall pectin metabolic process	3.29E-04
23	GO:0046902: regulation of mitochondrial membrane permeability	4.75E-04
24	GO:0009800: cinnamic acid biosynthetic process	4.75E-04
25	GO:0001676: long-chain fatty acid metabolic process	4.75E-04
26	GO:0045017: glycerolipid biosynthetic process	4.75E-04
27	GO:0009694: jasmonic acid metabolic process	6.32E-04
28	GO:0016036: cellular response to phosphate starvation	7.01E-04
29	GO:0032957: inositol trisphosphate metabolic process	8.00E-04
30	GO:0006559: L-phenylalanine catabolic process	9.77E-04
31	GO:0046855: inositol phosphate dephosphorylation	9.77E-04
32	GO:0033365: protein localization to organelle	9.77E-04
33	GO:0009832: plant-type cell wall biogenesis	1.17E-03
34	GO:0071669: plant-type cell wall organization or biogenesis	1.36E-03
35	GO:0006744: ubiquinone biosynthetic process	1.36E-03
36	GO:0055085: transmembrane transport	1.55E-03
37	GO:0009819: drought recovery	1.57E-03
38	GO:0009808: lignin metabolic process	1.79E-03
39	GO:0009636: response to toxic substance	2.01E-03
40	GO:0019538: protein metabolic process	2.51E-03
41	GO:0009698: phenylpropanoid metabolic process	2.77E-03
42	GO:0015770: sucrose transport	2.77E-03
43	GO:1903507: negative regulation of nucleic acid-templated transcription	2.77E-03
44	GO:0046856: phosphatidylinositol dephosphorylation	2.77E-03
45	GO:0016024: CDP-diacylglycerol biosynthetic process	3.03E-03
46	GO:0010152: pollen maturation	3.03E-03
47	GO:0046274: lignin catabolic process	3.31E-03
48	GO:0018107: peptidyl-threonine phosphorylation	3.31E-03
49	GO:0009718: anthocyanin-containing compound biosynthetic process	3.31E-03
50	GO:0018105: peptidyl-serine phosphorylation	3.50E-03
51	GO:0010143: cutin biosynthetic process	3.59E-03
52	GO:0006446: regulation of translational initiation	3.59E-03
53	GO:0009901: anther dehiscence	3.88E-03
54	GO:0005985: sucrose metabolic process	3.88E-03
55	GO:0090351: seedling development	3.88E-03
56	GO:0009695: jasmonic acid biosynthetic process	4.80E-03
57	GO:0051302: regulation of cell division	4.80E-03
58	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.45E-03
59	GO:0007005: mitochondrion organization	5.45E-03
60	GO:0040007: growth	5.78E-03
61	GO:0000271: polysaccharide biosynthetic process	6.83E-03
62	GO:0048653: anther development	6.83E-03
63	GO:0010154: fruit development	7.20E-03
64	GO:0008360: regulation of cell shape	7.20E-03
65	GO:0048868: pollen tube development	7.20E-03
66	GO:0006814: sodium ion transport	7.57E-03
67	GO:0071554: cell wall organization or biogenesis	8.33E-03
68	GO:0006635: fatty acid beta-oxidation	8.33E-03
69	GO:0032502: developmental process	8.73E-03
70	GO:0009737: response to abscisic acid	9.92E-03
71	GO:0016579: protein deubiquitination	1.04E-02
72	GO:0009911: positive regulation of flower development	1.08E-02
73	GO:0001666: response to hypoxia	1.08E-02
74	GO:0009607: response to biotic stimulus	1.12E-02
75	GO:0080167: response to karrikin	1.12E-02
76	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.12E-02
77	GO:0010200: response to chitin	1.16E-02
78	GO:0048573: photoperiodism, flowering	1.21E-02
79	GO:0016311: dephosphorylation	1.26E-02
80	GO:0030244: cellulose biosynthetic process	1.30E-02
81	GO:0008219: cell death	1.30E-02
82	GO:0048767: root hair elongation	1.35E-02
83	GO:0009407: toxin catabolic process	1.39E-02
84	GO:0010043: response to zinc ion	1.44E-02
85	GO:0007568: aging	1.44E-02
86	GO:0009867: jasmonic acid mediated signaling pathway	1.54E-02
87	GO:0006839: mitochondrial transport	1.69E-02
88	GO:0006897: endocytosis	1.74E-02
89	GO:0009753: response to jasmonic acid	1.78E-02
90	GO:0008152: metabolic process	1.83E-02
91	GO:0009651: response to salt stress	1.96E-02
92	GO:0055114: oxidation-reduction process	1.98E-02
93	GO:0009965: leaf morphogenesis	2.00E-02
94	GO:0031347: regulation of defense response	2.11E-02
95	GO:0006812: cation transport	2.16E-02
96	GO:0009809: lignin biosynthetic process	2.28E-02
97	GO:0006813: potassium ion transport	2.28E-02
98	GO:0009736: cytokinin-activated signaling pathway	2.28E-02
99	GO:0010224: response to UV-B	2.33E-02
100	GO:0009909: regulation of flower development	2.45E-02
101	GO:0046686: response to cadmium ion	2.48E-02
102	GO:0009620: response to fungus	2.74E-02
103	GO:0009742: brassinosteroid mediated signaling pathway	3.05E-02
104	GO:0035556: intracellular signal transduction	3.12E-02
105	GO:0045893: positive regulation of transcription, DNA-templated	3.39E-02
106	GO:0007165: signal transduction	3.56E-02
107	GO:0009845: seed germination	3.63E-02
108	GO:0006952: defense response	4.10E-02
109	GO:0006413: translational initiation	4.11E-02
110	GO:0010228: vegetative to reproductive phase transition of meristem	4.46E-02
111	GO:0006470: protein dephosphorylation	4.75E-02
112	GO:0007166: cell surface receptor signaling pathway	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
2	GO:0052694: jasmonoyl-isoleucine-12-hydroxylase activity	0.00E+00
3	GO:0050373: UDP-arabinose 4-epimerase activity	1.60E-08
4	GO:0003978: UDP-glucose 4-epimerase activity	1.29E-07
5	GO:0090353: polygalacturonase inhibitor activity	8.25E-05
6	GO:0050736: O-malonyltransferase activity	1.97E-04
7	GO:0045548: phenylalanine ammonia-lyase activity	3.29E-04
8	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	3.29E-04
9	GO:0033897: ribonuclease T2 activity	3.29E-04
10	GO:0003979: UDP-glucose 6-dehydrogenase activity	3.29E-04
11	GO:0004445: inositol-polyphosphate 5-phosphatase activity	4.75E-04
12	GO:0005432: calcium:sodium antiporter activity	4.75E-04
13	GO:0016656: monodehydroascorbate reductase (NADH) activity	4.75E-04
14	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	4.75E-04
15	GO:0003995: acyl-CoA dehydrogenase activity	6.32E-04
16	GO:0003997: acyl-CoA oxidase activity	8.00E-04
17	GO:0005471: ATP:ADP antiporter activity	8.00E-04
18	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	9.77E-04
19	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	9.77E-04
20	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	9.77E-04
21	GO:0004012: phospholipid-translocating ATPase activity	1.16E-03
22	GO:0051753: mannan synthase activity	1.16E-03
23	GO:0004144: diacylglycerol O-acyltransferase activity	1.16E-03
24	GO:0008506: sucrose:proton symporter activity	1.36E-03
25	GO:0052747: sinapyl alcohol dehydrogenase activity	1.57E-03
26	GO:0015491: cation:cation antiporter activity	1.57E-03
27	GO:0050660: flavin adenine dinucleotide binding	1.57E-03
28	GO:0016207: 4-coumarate-CoA ligase activity	2.02E-03
29	GO:0047617: acyl-CoA hydrolase activity	2.26E-03
30	GO:0008515: sucrose transmembrane transporter activity	2.77E-03
31	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.03E-03
32	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.03E-03
33	GO:0004521: endoribonuclease activity	3.03E-03
34	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.31E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	3.31E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.59E-03
37	GO:0001046: core promoter sequence-specific DNA binding	4.48E-03
38	GO:0003714: transcription corepressor activity	4.48E-03
39	GO:0016301: kinase activity	4.95E-03
40	GO:0004540: ribonuclease activity	5.12E-03
41	GO:0019706: protein-cysteine S-palmitoyltransferase activity	5.12E-03
42	GO:0015297: antiporter activity	5.59E-03
43	GO:0016760: cellulose synthase (UDP-forming) activity	5.78E-03
44	GO:0042802: identical protein binding	7.43E-03
45	GO:0016853: isomerase activity	7.57E-03
46	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.33E-03
47	GO:0016791: phosphatase activity	9.53E-03
48	GO:0016759: cellulose synthase activity	9.53E-03
49	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.94E-03
50	GO:0016413: O-acetyltransferase activity	1.04E-02
51	GO:0005525: GTP binding	1.09E-02
52	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.44E-02
53	GO:0003824: catalytic activity	1.60E-02
54	GO:0003924: GTPase activity	1.66E-02
55	GO:0004364: glutathione transferase activity	1.79E-02
56	GO:0015293: symporter activity	2.00E-02
57	GO:0051287: NAD binding	2.11E-02
58	GO:0004672: protein kinase activity	2.31E-02
59	GO:0016298: lipase activity	2.33E-02
60	GO:0003729: mRNA binding	2.34E-02
61	GO:0016874: ligase activity	2.80E-02
62	GO:0016746: transferase activity, transferring acyl groups	2.99E-02
63	GO:0008026: ATP-dependent helicase activity	3.05E-02
64	GO:0016758: transferase activity, transferring hexosyl groups	3.37E-02
65	GO:0004674: protein serine/threonine kinase activity	3.45E-02
66	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.50E-02
67	GO:0015144: carbohydrate transmembrane transporter activity	3.90E-02
68	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.11E-02
69	GO:0005351: sugar:proton symporter activity	4.25E-02
70	GO:0005524: ATP binding	4.38E-02
71	GO:0005516: calmodulin binding	4.43E-02
72	GO:0008017: microtubule binding	4.46E-02
73	GO:0005515: protein binding	4.58E-02
74	GO:0008194: UDP-glycosyltransferase activity	4.67E-02
75	GO:0003743: translation initiation factor activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0032580: Golgi cisterna membrane	3.92E-05
2	GO:0005794: Golgi apparatus	2.37E-04
3	GO:0030173: integral component of Golgi membrane	1.16E-03
4	GO:0005774: vacuolar membrane	1.63E-03
5	GO:0005886: plasma membrane	2.12E-03
6	GO:0005802: trans-Golgi network	2.21E-03
7	GO:0005740: mitochondrial envelope	2.51E-03
8	GO:0005768: endosome	2.69E-03
9	GO:0090404: pollen tube tip	2.77E-03
10	GO:0005737: cytoplasm	3.27E-03
11	GO:0005938: cell cortex	3.31E-03
12	GO:0009524: phragmoplast	4.48E-03
13	GO:0005741: mitochondrial outer membrane	5.12E-03
14	GO:0009504: cell plate	7.95E-03
15	GO:0031965: nuclear membrane	7.95E-03
16	GO:0016592: mediator complex	8.73E-03
17	GO:0005743: mitochondrial inner membrane	1.55E-02
18	GO:0031902: late endosome membrane	1.74E-02
19	GO:0090406: pollen tube	1.84E-02
20	GO:0009505: plant-type cell wall	1.89E-02
21	GO:0005618: cell wall	2.51E-02
22	GO:0010008: endosome membrane	2.62E-02
23	GO:0005834: heterotrimeric G-protein complex	2.68E-02
24	GO:0005777: peroxisome	3.39E-02
25	GO:0016021: integral component of membrane	3.65E-02
26	GO:0005829: cytosol	3.91E-02