co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010202: response to low fluence red light stimulus	0.00E+00
2	GO:0006721: terpenoid metabolic process	0.00E+00
3	GO:0017012: protein-phytochromobilin linkage	0.00E+00
4	GO:0010336: gibberellic acid homeostasis	0.00E+00
5	GO:0018293: protein-FAD linkage	0.00E+00
6	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
7	GO:0016487: farnesol metabolic process	6.91E-05
8	GO:0006007: glucose catabolic process	6.91E-05
9	GO:0006835: dicarboxylic acid transport	6.91E-05
10	GO:0010617: circadian regulation of calcium ion oscillation	1.66E-04
11	GO:0019441: tryptophan catabolic process to kynurenine	1.66E-04
12	GO:0009308: amine metabolic process	1.66E-04
13	GO:0097054: L-glutamate biosynthetic process	1.66E-04
14	GO:0080183: response to photooxidative stress	1.66E-04
15	GO:0051603: proteolysis involved in cellular protein catabolic process	1.82E-04
16	GO:1901562: response to paraquat	2.81E-04
17	GO:0044375: regulation of peroxisome size	2.81E-04
18	GO:0040009: regulation of growth rate	2.81E-04
19	GO:0042391: regulation of membrane potential	3.65E-04
20	GO:0006520: cellular amino acid metabolic process	3.94E-04
21	GO:0009584: detection of visible light	4.06E-04
22	GO:0006809: nitric oxide biosynthetic process	4.06E-04
23	GO:0010148: transpiration	4.06E-04
24	GO:0006537: glutamate biosynthetic process	4.06E-04
25	GO:0006624: vacuolar protein processing	4.06E-04
26	GO:0006221: pyrimidine nucleotide biosynthetic process	5.42E-04
27	GO:0009649: entrainment of circadian clock	5.42E-04
28	GO:0015846: polyamine transport	5.42E-04
29	GO:0044205: 'de novo' UMP biosynthetic process	5.42E-04
30	GO:0009687: abscisic acid metabolic process	5.42E-04
31	GO:0019676: ammonia assimilation cycle	5.42E-04
32	GO:0015743: malate transport	5.42E-04
33	GO:0009904: chloroplast accumulation movement	6.87E-04
34	GO:0010236: plastoquinone biosynthetic process	6.87E-04
35	GO:0006508: proteolysis	8.01E-04
36	GO:0009117: nucleotide metabolic process	8.40E-04
37	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	8.40E-04
38	GO:0006751: glutathione catabolic process	8.40E-04
39	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.99E-04
40	GO:0009903: chloroplast avoidance movement	9.99E-04
41	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.17E-03
42	GO:0050790: regulation of catalytic activity	1.17E-03
43	GO:0010374: stomatal complex development	1.17E-03
44	GO:0010161: red light signaling pathway	1.17E-03
45	GO:0030091: protein repair	1.34E-03
46	GO:0016559: peroxisome fission	1.34E-03
47	GO:0044550: secondary metabolite biosynthetic process	1.41E-03
48	GO:0009926: auxin polar transport	1.42E-03
49	GO:0015996: chlorophyll catabolic process	1.53E-03
50	GO:0009638: phototropism	1.93E-03
51	GO:0051453: regulation of intracellular pH	1.93E-03
52	GO:0006325: chromatin organization	2.14E-03
53	GO:0045036: protein targeting to chloroplast	2.14E-03
54	GO:0072593: reactive oxygen species metabolic process	2.36E-03
55	GO:2000028: regulation of photoperiodism, flowering	2.82E-03
56	GO:0050826: response to freezing	2.82E-03
57	GO:0009266: response to temperature stimulus	3.06E-03
58	GO:0007031: peroxisome organization	3.30E-03
59	GO:0042343: indole glucosinolate metabolic process	3.30E-03
60	GO:0009058: biosynthetic process	3.54E-03
61	GO:0006071: glycerol metabolic process	3.56E-03
62	GO:0008299: isoprenoid biosynthetic process	4.08E-03
63	GO:0055114: oxidation-reduction process	4.34E-03
64	GO:0098542: defense response to other organism	4.35E-03
65	GO:0009693: ethylene biosynthetic process	4.91E-03
66	GO:0006012: galactose metabolic process	4.91E-03
67	GO:0080022: primary root development	5.80E-03
68	GO:0010118: stomatal movement	5.80E-03
69	GO:0010268: brassinosteroid homeostasis	6.11E-03
70	GO:0006814: sodium ion transport	6.42E-03
71	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.07E-03
72	GO:0016132: brassinosteroid biosynthetic process	7.07E-03
73	GO:0009630: gravitropism	7.40E-03
74	GO:1901657: glycosyl compound metabolic process	7.73E-03
75	GO:0016125: sterol metabolic process	8.08E-03
76	GO:0010252: auxin homeostasis	8.08E-03
77	GO:0006464: cellular protein modification process	8.08E-03
78	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	9.50E-03
79	GO:0010029: regulation of seed germination	9.50E-03
80	GO:0006974: cellular response to DNA damage stimulus	9.87E-03
81	GO:0042128: nitrate assimilation	9.87E-03
82	GO:0015979: photosynthesis	1.01E-02
83	GO:0018298: protein-chromophore linkage	1.10E-02
84	GO:0010311: lateral root formation	1.14E-02
85	GO:0010218: response to far red light	1.18E-02
86	GO:0009751: response to salicylic acid	1.29E-02
87	GO:0009867: jasmonic acid mediated signaling pathway	1.30E-02
88	GO:0045087: innate immune response	1.30E-02
89	GO:0009637: response to blue light	1.30E-02
90	GO:0006629: lipid metabolic process	1.31E-02
91	GO:0006099: tricarboxylic acid cycle	1.34E-02
92	GO:0009409: response to cold	1.54E-02
93	GO:0009640: photomorphogenesis	1.56E-02
94	GO:0031347: regulation of defense response	1.78E-02
95	GO:0005975: carbohydrate metabolic process	1.78E-02
96	GO:0009585: red, far-red light phototransduction	1.92E-02
97	GO:0006857: oligopeptide transport	2.02E-02
98	GO:0006096: glycolytic process	2.17E-02
99	GO:0009626: plant-type hypersensitive response	2.27E-02
100	GO:0009620: response to fungus	2.32E-02
101	GO:0051726: regulation of cell cycle	2.58E-02
102	GO:0010150: leaf senescence	3.65E-02
103	GO:0009617: response to bacterium	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0031517: red light photoreceptor activity	0.00E+00
2	GO:0004151: dihydroorotase activity	0.00E+00
3	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
4	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
5	GO:0015930: glutamate synthase activity	0.00E+00
6	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
7	GO:0047886: farnesol dehydrogenase activity	0.00E+00
8	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
9	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
10	GO:0008106: alcohol dehydrogenase (NADP+) activity	2.48E-06
11	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.23E-05
12	GO:0005261: cation channel activity	1.76E-05
13	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	6.91E-05
14	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	6.91E-05
15	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	6.91E-05
16	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	6.91E-05
17	GO:1990841: promoter-specific chromatin binding	6.91E-05
18	GO:0052595: aliphatic-amine oxidase activity	6.91E-05
19	GO:0016041: glutamate synthase (ferredoxin) activity	6.91E-05
20	GO:0031516: far-red light photoreceptor activity	6.91E-05
21	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	6.91E-05
22	GO:0046480: galactolipid galactosyltransferase activity	6.91E-05
23	GO:0080079: cellobiose glucosidase activity	6.91E-05
24	GO:0030553: cGMP binding	1.54E-04
25	GO:0030552: cAMP binding	1.54E-04
26	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	1.66E-04
27	GO:0050347: trans-octaprenyltranstransferase activity	1.66E-04
28	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.66E-04
29	GO:0004061: arylformamidase activity	1.66E-04
30	GO:0015179: L-amino acid transmembrane transporter activity	1.66E-04
31	GO:0009883: red or far-red light photoreceptor activity	1.66E-04
32	GO:0005216: ion channel activity	2.16E-04
33	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.81E-04
34	GO:0004557: alpha-galactosidase activity	2.81E-04
35	GO:0008020: G-protein coupled photoreceptor activity	2.81E-04
36	GO:0052692: raffinose alpha-galactosidase activity	2.81E-04
37	GO:0030551: cyclic nucleotide binding	3.65E-04
38	GO:0005249: voltage-gated potassium channel activity	3.65E-04
39	GO:0015203: polyamine transmembrane transporter activity	4.06E-04
40	GO:0035529: NADH pyrophosphatase activity	4.06E-04
41	GO:0004197: cysteine-type endopeptidase activity	5.17E-04
42	GO:0004301: epoxide hydrolase activity	5.42E-04
43	GO:0008177: succinate dehydrogenase (ubiquinone) activity	6.87E-04
44	GO:0051538: 3 iron, 4 sulfur cluster binding	6.87E-04
45	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	8.40E-04
46	GO:0008236: serine-type peptidase activity	8.51E-04
47	GO:0020037: heme binding	9.85E-04
48	GO:0015140: malate transmembrane transporter activity	1.17E-03
49	GO:0019825: oxygen binding	1.29E-03
50	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.34E-03
51	GO:0004034: aldose 1-epimerase activity	1.34E-03
52	GO:0004869: cysteine-type endopeptidase inhibitor activity	1.34E-03
53	GO:0004185: serine-type carboxypeptidase activity	1.42E-03
54	GO:0051537: 2 iron, 2 sulfur cluster binding	1.54E-03
55	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.73E-03
56	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.76E-03
57	GO:0015174: basic amino acid transmembrane transporter activity	1.93E-03
58	GO:0009672: auxin:proton symporter activity	1.93E-03
59	GO:0008234: cysteine-type peptidase activity	2.10E-03
60	GO:0004673: protein histidine kinase activity	2.14E-03
61	GO:0005506: iron ion binding	2.14E-03
62	GO:0008378: galactosyltransferase activity	2.58E-03
63	GO:0010329: auxin efflux transmembrane transporter activity	2.82E-03
64	GO:0000155: phosphorelay sensor kinase activity	2.82E-03
65	GO:0004175: endopeptidase activity	3.06E-03
66	GO:0008131: primary amine oxidase activity	3.06E-03
67	GO:0030170: pyridoxal phosphate binding	3.72E-03
68	GO:0008324: cation transmembrane transporter activity	4.08E-03
69	GO:0042802: identical protein binding	5.86E-03
70	GO:0050662: coenzyme binding	6.42E-03
71	GO:0016853: isomerase activity	6.42E-03
72	GO:0048038: quinone binding	7.07E-03
73	GO:0008483: transaminase activity	8.42E-03
74	GO:0030247: polysaccharide binding	1.02E-02
75	GO:0030145: manganese ion binding	1.22E-02
76	GO:0008422: beta-glucosidase activity	1.38E-02
77	GO:0015293: symporter activity	1.69E-02
78	GO:0016298: lipase activity	1.97E-02
79	GO:0015035: protein disulfide oxidoreductase activity	2.52E-02
80	GO:0016787: hydrolase activity	2.74E-02
81	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.96E-02
82	GO:0005516: calmodulin binding	3.50E-02
83	GO:0015297: antiporter activity	3.53E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0005773: vacuole	4.78E-07
3	GO:0005764: lysosome	1.36E-04
4	GO:0000323: lytic vacuole	4.06E-04
5	GO:0009536: plastid	6.35E-04
6	GO:0005774: vacuolar membrane	1.01E-03
7	GO:0031359: integral component of chloroplast outer membrane	1.17E-03
8	GO:0009501: amyloplast	1.34E-03
9	GO:0005779: integral component of peroxisomal membrane	1.53E-03
10	GO:0005829: cytosol	1.60E-03
11	GO:0016604: nuclear body	1.93E-03
12	GO:0005576: extracellular region	2.65E-03
13	GO:0005887: integral component of plasma membrane	3.05E-03
14	GO:0009505: plant-type cell wall	3.09E-03
15	GO:0005623: cell	3.45E-03
16	GO:0005783: endoplasmic reticulum	4.03E-03
17	GO:0009941: chloroplast envelope	6.63E-03
18	GO:0005778: peroxisomal membrane	8.42E-03
19	GO:0010319: stromule	8.42E-03
20	GO:0009707: chloroplast outer membrane	1.10E-02
21	GO:0016607: nuclear speck	2.22E-02
22	GO:0009706: chloroplast inner membrane	2.47E-02
23	GO:0010287: plastoglobule	2.79E-02
24	GO:0005615: extracellular space	3.95E-02