co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
2	GO:0042304: regulation of fatty acid biosynthetic process	0.00E+00
3	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
4	GO:0009661: chromoplast organization	0.00E+00
5	GO:2000013: regulation of arginine biosynthetic process via ornithine	0.00E+00
6	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
7	GO:0010190: cytochrome b6f complex assembly	2.28E-05
8	GO:0071461: cellular response to redox state	1.00E-04
9	GO:0032956: regulation of actin cytoskeleton organization	1.00E-04
10	GO:0048438: floral whorl development	1.00E-04
11	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.00E-04
12	GO:0055114: oxidation-reduction process	1.45E-04
13	GO:2000071: regulation of defense response by callose deposition	2.36E-04
14	GO:0080005: photosystem stoichiometry adjustment	2.36E-04
15	GO:0007154: cell communication	2.36E-04
16	GO:0010220: positive regulation of vernalization response	2.36E-04
17	GO:0048571: long-day photoperiodism	2.36E-04
18	GO:1904143: positive regulation of carotenoid biosynthetic process	2.36E-04
19	GO:0043100: pyrimidine nucleobase salvage	2.36E-04
20	GO:0080185: effector dependent induction by symbiont of host immune response	2.36E-04
21	GO:0009150: purine ribonucleotide metabolic process	3.92E-04
22	GO:0031929: TOR signaling	3.92E-04
23	GO:0016570: histone modification	3.92E-04
24	GO:0019419: sulfate reduction	3.92E-04
25	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.31E-04
26	GO:0009963: positive regulation of flavonoid biosynthetic process	5.64E-04
27	GO:0009647: skotomorphogenesis	5.64E-04
28	GO:0050482: arachidonic acid secretion	5.64E-04
29	GO:2001141: regulation of RNA biosynthetic process	5.64E-04
30	GO:0009649: entrainment of circadian clock	7.50E-04
31	GO:0071585: detoxification of cadmium ion	7.50E-04
32	GO:0010021: amylopectin biosynthetic process	7.50E-04
33	GO:0006808: regulation of nitrogen utilization	7.50E-04
34	GO:0070534: protein K63-linked ubiquitination	7.50E-04
35	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.83E-04
36	GO:0016120: carotene biosynthetic process	9.47E-04
37	GO:0046283: anthocyanin-containing compound metabolic process	9.47E-04
38	GO:0000060: protein import into nucleus, translocation	1.16E-03
39	GO:0033365: protein localization to organelle	1.16E-03
40	GO:0009117: nucleotide metabolic process	1.16E-03
41	GO:0006301: postreplication repair	1.16E-03
42	GO:0006555: methionine metabolic process	1.16E-03
43	GO:0010076: maintenance of floral meristem identity	1.38E-03
44	GO:0010077: maintenance of inflorescence meristem identity	1.38E-03
45	GO:0019509: L-methionine salvage from methylthioadenosine	1.38E-03
46	GO:0010161: red light signaling pathway	1.62E-03
47	GO:0006368: transcription elongation from RNA polymerase II promoter	1.62E-03
48	GO:0009658: chloroplast organization	1.83E-03
49	GO:0050821: protein stabilization	1.87E-03
50	GO:0009231: riboflavin biosynthetic process	1.87E-03
51	GO:0006102: isocitrate metabolic process	1.87E-03
52	GO:0006644: phospholipid metabolic process	1.87E-03
53	GO:0048564: photosystem I assembly	1.87E-03
54	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.87E-03
55	GO:0019430: removal of superoxide radicals	2.14E-03
56	GO:0071482: cellular response to light stimulus	2.14E-03
57	GO:0046916: cellular transition metal ion homeostasis	2.41E-03
58	GO:1900426: positive regulation of defense response to bacterium	2.70E-03
59	GO:0031347: regulation of defense response	2.80E-03
60	GO:0000103: sulfate assimilation	3.00E-03
61	GO:0009641: shade avoidance	3.00E-03
62	GO:1903507: negative regulation of nucleic acid-templated transcription	3.31E-03
63	GO:0006352: DNA-templated transcription, initiation	3.31E-03
64	GO:0009682: induced systemic resistance	3.31E-03
65	GO:0010582: floral meristem determinacy	3.63E-03
66	GO:0006790: sulfur compound metabolic process	3.63E-03
67	GO:0009785: blue light signaling pathway	3.95E-03
68	GO:0006807: nitrogen compound metabolic process	3.95E-03
69	GO:0009718: anthocyanin-containing compound biosynthetic process	3.95E-03
70	GO:0010207: photosystem II assembly	4.30E-03
71	GO:0019344: cysteine biosynthetic process	5.37E-03
72	GO:0006366: transcription from RNA polymerase II promoter	6.14E-03
73	GO:0016226: iron-sulfur cluster assembly	6.54E-03
74	GO:0040007: growth	6.94E-03
75	GO:0042335: cuticle development	8.21E-03
76	GO:0010118: stomatal movement	8.21E-03
77	GO:0006662: glycerol ether metabolic process	8.65E-03
78	GO:0019252: starch biosynthetic process	9.56E-03
79	GO:0002229: defense response to oomycetes	1.00E-02
80	GO:0030163: protein catabolic process	1.10E-02
81	GO:0016126: sterol biosynthetic process	1.30E-02
82	GO:0010411: xyloglucan metabolic process	1.46E-02
83	GO:0048573: photoperiodism, flowering	1.46E-02
84	GO:0006950: response to stress	1.46E-02
85	GO:0018298: protein-chromophore linkage	1.57E-02
86	GO:0010119: regulation of stomatal movement	1.74E-02
87	GO:0010043: response to zinc ion	1.74E-02
88	GO:0007568: aging	1.74E-02
89	GO:0045454: cell redox homeostasis	1.76E-02
90	GO:0009867: jasmonic acid mediated signaling pathway	1.86E-02
91	GO:0009853: photorespiration	1.86E-02
92	GO:0034599: cellular response to oxidative stress	1.91E-02
93	GO:0006099: tricarboxylic acid cycle	1.91E-02
94	GO:0030001: metal ion transport	2.03E-02
95	GO:0006281: DNA repair	2.17E-02
96	GO:0009640: photomorphogenesis	2.22E-02
97	GO:0009744: response to sucrose	2.22E-02
98	GO:0000165: MAPK cascade	2.55E-02
99	GO:0009585: red, far-red light phototransduction	2.75E-02
100	GO:0009809: lignin biosynthetic process	2.75E-02
101	GO:0010224: response to UV-B	2.81E-02
102	GO:0009620: response to fungus	3.31E-02
103	GO:0035556: intracellular signal transduction	4.05E-02
104	GO:0045893: positive regulation of transcription, DNA-templated	4.40E-02
105	GO:0006457: protein folding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
2	GO:0047710: bis(5'-adenosyl)-triphosphatase activity	0.00E+00
3	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
4	GO:0010307: acetylglutamate kinase regulator activity	0.00E+00
5	GO:0043530: adenosine 5'-monophosphoramidase activity	0.00E+00
6	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
7	GO:0008106: alcohol dehydrogenase (NADP+) activity	4.78E-06
8	GO:0047627: adenylylsulfatase activity	4.78E-06
9	GO:0016783: sulfurtransferase activity	1.00E-04
10	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.00E-04
11	GO:0009973: adenylyl-sulfate reductase activity	2.36E-04
12	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	2.36E-04
13	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	2.36E-04
14	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.36E-04
15	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	2.36E-04
16	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.36E-04
17	GO:0033201: alpha-1,4-glucan synthase activity	2.36E-04
18	GO:0003935: GTP cyclohydrolase II activity	3.92E-04
19	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.92E-04
20	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	3.92E-04
21	GO:0004180: carboxypeptidase activity	3.92E-04
22	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.92E-04
23	GO:0004373: glycogen (starch) synthase activity	3.92E-04
24	GO:0003913: DNA photolyase activity	3.92E-04
25	GO:0032947: protein complex scaffold	3.92E-04
26	GO:0004792: thiosulfate sulfurtransferase activity	5.64E-04
27	GO:0000254: C-4 methylsterol oxidase activity	5.64E-04
28	GO:0009011: starch synthase activity	7.50E-04
29	GO:0001053: plastid sigma factor activity	7.50E-04
30	GO:0016987: sigma factor activity	7.50E-04
31	GO:0048038: quinone binding	7.83E-04
32	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.87E-04
33	GO:0004623: phospholipase A2 activity	9.47E-04
34	GO:0004784: superoxide dismutase activity	1.16E-03
35	GO:0016621: cinnamoyl-CoA reductase activity	1.62E-03
36	GO:0009881: photoreceptor activity	1.62E-03
37	GO:0016491: oxidoreductase activity	1.74E-03
38	GO:0046914: transition metal ion binding	2.14E-03
39	GO:0015266: protein channel activity	3.95E-03
40	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.95E-03
41	GO:0031072: heat shock protein binding	3.95E-03
42	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.30E-03
43	GO:0001046: core promoter sequence-specific DNA binding	5.37E-03
44	GO:0003714: transcription corepressor activity	5.37E-03
45	GO:0051536: iron-sulfur cluster binding	5.37E-03
46	GO:0047134: protein-disulfide reductase activity	7.78E-03
47	GO:0008080: N-acetyltransferase activity	8.65E-03
48	GO:0010181: FMN binding	9.10E-03
49	GO:0050662: coenzyme binding	9.10E-03
50	GO:0004791: thioredoxin-disulfide reductase activity	9.10E-03
51	GO:0000287: magnesium ion binding	1.16E-02
52	GO:0016413: O-acetyltransferase activity	1.25E-02
53	GO:0030247: polysaccharide binding	1.46E-02
54	GO:0008236: serine-type peptidase activity	1.51E-02
55	GO:0061630: ubiquitin protein ligase activity	1.54E-02
56	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.57E-02
57	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.74E-02
58	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.86E-02
59	GO:0005198: structural molecule activity	2.41E-02
60	GO:0051287: NAD binding	2.55E-02
61	GO:0005515: protein binding	2.64E-02
62	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.75E-02
63	GO:0031625: ubiquitin protein ligase binding	2.95E-02
64	GO:0051082: unfolded protein binding	3.53E-02
65	GO:0015035: protein disulfide oxidoreductase activity	3.61E-02
66	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.01E-08
2	GO:0000152: nuclear ubiquitin ligase complex	1.00E-04
3	GO:0031932: TORC2 complex	1.00E-04
4	GO:0009535: chloroplast thylakoid membrane	2.95E-04
5	GO:0031931: TORC1 complex	3.92E-04
6	GO:0005747: mitochondrial respiratory chain complex I	4.43E-04
7	GO:0009526: plastid envelope	7.50E-04
8	GO:0009527: plastid outer membrane	7.50E-04
9	GO:0031372: UBC13-MMS2 complex	7.50E-04
10	GO:0016593: Cdc73/Paf1 complex	7.50E-04
11	GO:0009501: amyloplast	1.87E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.41E-03
13	GO:0016604: nuclear body	2.70E-03
14	GO:0045271: respiratory chain complex I	5.75E-03
15	GO:0009536: plastid	6.44E-03
16	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.35E-03
17	GO:0005777: peroxisome	9.68E-03
18	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.30E-02
19	GO:0031969: chloroplast membrane	1.47E-02
20	GO:0031977: thylakoid lumen	2.10E-02
21	GO:0031966: mitochondrial membrane	2.61E-02
22	GO:0009570: chloroplast stroma	2.81E-02
23	GO:0016607: nuclear speck	3.17E-02
24	GO:0005739: mitochondrion	4.13E-02
25	GO:0009534: chloroplast thylakoid	4.62E-02
26	GO:0005759: mitochondrial matrix	4.87E-02