GO Enrichment Analysis of Co-expressed Genes with
AT3G16000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 4 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 5 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 6 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.80E-08 |
| 7 | GO:0009765: photosynthesis, light harvesting | 5.27E-07 |
| 8 | GO:0016123: xanthophyll biosynthetic process | 9.06E-07 |
| 9 | GO:0016120: carotene biosynthetic process | 9.06E-07 |
| 10 | GO:0009657: plastid organization | 5.18E-06 |
| 11 | GO:0009793: embryo development ending in seed dormancy | 6.27E-06 |
| 12 | GO:0006419: alanyl-tRNA aminoacylation | 1.87E-05 |
| 13 | GO:0043087: regulation of GTPase activity | 1.87E-05 |
| 14 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.85E-05 |
| 15 | GO:0006435: threonyl-tRNA aminoacylation | 4.85E-05 |
| 16 | GO:0009451: RNA modification | 5.85E-05 |
| 17 | GO:0005977: glycogen metabolic process | 8.61E-05 |
| 18 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.30E-04 |
| 19 | GO:2001141: regulation of RNA biosynthetic process | 1.30E-04 |
| 20 | GO:0018298: protein-chromophore linkage | 1.72E-04 |
| 21 | GO:0010021: amylopectin biosynthetic process | 1.78E-04 |
| 22 | GO:0006564: L-serine biosynthetic process | 2.30E-04 |
| 23 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 2.85E-04 |
| 24 | GO:0010114: response to red light | 2.87E-04 |
| 25 | GO:1901259: chloroplast rRNA processing | 3.42E-04 |
| 26 | GO:0006364: rRNA processing | 3.87E-04 |
| 27 | GO:0006401: RNA catabolic process | 4.02E-04 |
| 28 | GO:0006400: tRNA modification | 4.02E-04 |
| 29 | GO:0048564: photosystem I assembly | 4.64E-04 |
| 30 | GO:0006402: mRNA catabolic process | 4.64E-04 |
| 31 | GO:0071482: cellular response to light stimulus | 5.27E-04 |
| 32 | GO:0017004: cytochrome complex assembly | 5.27E-04 |
| 33 | GO:0006396: RNA processing | 5.60E-04 |
| 34 | GO:0005982: starch metabolic process | 6.61E-04 |
| 35 | GO:0031425: chloroplast RNA processing | 6.61E-04 |
| 36 | GO:0006415: translational termination | 8.02E-04 |
| 37 | GO:0006352: DNA-templated transcription, initiation | 8.02E-04 |
| 38 | GO:0006094: gluconeogenesis | 9.49E-04 |
| 39 | GO:0010020: chloroplast fission | 1.02E-03 |
| 40 | GO:0009658: chloroplast organization | 1.39E-03 |
| 41 | GO:0016117: carotenoid biosynthetic process | 1.80E-03 |
| 42 | GO:0008033: tRNA processing | 1.89E-03 |
| 43 | GO:0000413: protein peptidyl-prolyl isomerization | 1.89E-03 |
| 44 | GO:0015979: photosynthesis | 1.95E-03 |
| 45 | GO:0048868: pollen tube development | 1.99E-03 |
| 46 | GO:0019252: starch biosynthetic process | 2.19E-03 |
| 47 | GO:0010193: response to ozone | 2.29E-03 |
| 48 | GO:0006397: mRNA processing | 2.61E-03 |
| 49 | GO:0009911: positive regulation of flower development | 2.94E-03 |
| 50 | GO:0015995: chlorophyll biosynthetic process | 3.28E-03 |
| 51 | GO:0009637: response to blue light | 4.13E-03 |
| 52 | GO:0055085: transmembrane transport | 5.58E-03 |
| 53 | GO:0006457: protein folding | 5.69E-03 |
| 54 | GO:0010224: response to UV-B | 6.17E-03 |
| 55 | GO:0006417: regulation of translation | 6.46E-03 |
| 56 | GO:0006096: glycolytic process | 6.76E-03 |
| 57 | GO:0009553: embryo sac development | 7.53E-03 |
| 58 | GO:0009790: embryo development | 1.00E-02 |
| 59 | GO:0006413: translational initiation | 1.07E-02 |
| 60 | GO:0016036: cellular response to phosphate starvation | 1.07E-02 |
| 61 | GO:0042254: ribosome biogenesis | 1.56E-02 |
| 62 | GO:0044550: secondary metabolite biosynthetic process | 1.90E-02 |
| 63 | GO:0016042: lipid catabolic process | 2.31E-02 |
| 64 | GO:0009408: response to heat | 2.36E-02 |
| 65 | GO:0055114: oxidation-reduction process | 2.96E-02 |
| 66 | GO:0009555: pollen development | 3.55E-02 |
| 67 | GO:0009611: response to wounding | 3.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0043495: protein anchor | 5.27E-07 |
| 3 | GO:0019899: enzyme binding | 2.93E-06 |
| 4 | GO:0004347: glucose-6-phosphate isomerase activity | 1.87E-05 |
| 5 | GO:0004813: alanine-tRNA ligase activity | 1.87E-05 |
| 6 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.87E-05 |
| 7 | GO:0022891: substrate-specific transmembrane transporter activity | 4.67E-05 |
| 8 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.85E-05 |
| 9 | GO:0004829: threonine-tRNA ligase activity | 4.85E-05 |
| 10 | GO:0019156: isoamylase activity | 4.85E-05 |
| 11 | GO:0042802: identical protein binding | 8.10E-05 |
| 12 | GO:0004751: ribose-5-phosphate isomerase activity | 8.61E-05 |
| 13 | GO:0016597: amino acid binding | 1.22E-04 |
| 14 | GO:0016149: translation release factor activity, codon specific | 1.30E-04 |
| 15 | GO:0016168: chlorophyll binding | 1.37E-04 |
| 16 | GO:0001053: plastid sigma factor activity | 1.78E-04 |
| 17 | GO:0016987: sigma factor activity | 1.78E-04 |
| 18 | GO:0004519: endonuclease activity | 2.81E-04 |
| 19 | GO:0004556: alpha-amylase activity | 2.85E-04 |
| 20 | GO:0043022: ribosome binding | 4.64E-04 |
| 21 | GO:0003747: translation release factor activity | 5.93E-04 |
| 22 | GO:0003723: RNA binding | 8.07E-04 |
| 23 | GO:0000049: tRNA binding | 8.75E-04 |
| 24 | GO:0031072: heat shock protein binding | 9.49E-04 |
| 25 | GO:0000175: 3'-5'-exoribonuclease activity | 9.49E-04 |
| 26 | GO:0043424: protein histidine kinase binding | 1.35E-03 |
| 27 | GO:0003727: single-stranded RNA binding | 1.70E-03 |
| 28 | GO:0003924: GTPase activity | 2.50E-03 |
| 29 | GO:0005096: GTPase activator activity | 3.63E-03 |
| 30 | GO:0043621: protein self-association | 5.18E-03 |
| 31 | GO:0035091: phosphatidylinositol binding | 5.18E-03 |
| 32 | GO:0005198: structural molecule activity | 5.32E-03 |
| 33 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.46E-03 |
| 34 | GO:0051287: NAD binding | 5.60E-03 |
| 35 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 6.02E-03 |
| 36 | GO:0005525: GTP binding | 7.22E-03 |
| 37 | GO:0051082: unfolded protein binding | 7.69E-03 |
| 38 | GO:0019843: rRNA binding | 8.99E-03 |
| 39 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 9.16E-03 |
| 40 | GO:0003743: translation initiation factor activity | 1.26E-02 |
| 41 | GO:0016788: hydrolase activity, acting on ester bonds | 1.56E-02 |
| 42 | GO:0052689: carboxylic ester hydrolase activity | 1.92E-02 |
| 43 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.15E-02 |
| 44 | GO:0009055: electron carrier activity | 2.48E-02 |
| 45 | GO:0005507: copper ion binding | 4.57E-02 |
| 46 | GO:0019825: oxygen binding | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.69E-21 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.26E-08 |
| 3 | GO:0009570: chloroplast stroma | 4.97E-08 |
| 4 | GO:0042651: thylakoid membrane | 2.54E-07 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 3.42E-05 |
| 6 | GO:0009523: photosystem II | 7.95E-05 |
| 7 | GO:0042646: plastid nucleoid | 1.30E-04 |
| 8 | GO:0031977: thylakoid lumen | 2.64E-04 |
| 9 | GO:0009941: chloroplast envelope | 3.26E-04 |
| 10 | GO:0009533: chloroplast stromal thylakoid | 4.02E-04 |
| 11 | GO:0042644: chloroplast nucleoid | 5.93E-04 |
| 12 | GO:0009574: preprophase band | 9.49E-04 |
| 13 | GO:0030095: chloroplast photosystem II | 1.02E-03 |
| 14 | GO:0009532: plastid stroma | 1.44E-03 |
| 15 | GO:0031969: chloroplast membrane | 1.71E-03 |
| 16 | GO:0009579: thylakoid | 5.26E-03 |
| 17 | GO:0009534: chloroplast thylakoid | 5.31E-03 |
| 18 | GO:0005874: microtubule | 1.75E-02 |
| 19 | GO:0043231: intracellular membrane-bounded organelle | 2.53E-02 |