co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G15900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048856: anatomical structure development	0.00E+00
2	GO:0016576: histone dephosphorylation	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0071806: protein transmembrane transport	4.88E-05
6	GO:0071454: cellular response to anoxia	4.88E-05
7	GO:0043686: co-translational protein modification	4.88E-05
8	GO:0035335: peptidyl-tyrosine dephosphorylation	1.20E-04
9	GO:0080153: negative regulation of reductive pentose-phosphate cycle	1.20E-04
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.20E-04
11	GO:0045739: positive regulation of DNA repair	2.06E-04
12	GO:0042274: ribosomal small subunit biogenesis	4.04E-04
13	GO:0031935: regulation of chromatin silencing	4.04E-04
14	GO:0031365: N-terminal protein amino acid modification	5.13E-04
15	GO:0009658: chloroplast organization	5.57E-04
16	GO:0010190: cytochrome b6f complex assembly	6.29E-04
17	GO:0017148: negative regulation of translation	7.50E-04
18	GO:0010019: chloroplast-nucleus signaling pathway	7.50E-04
19	GO:1900056: negative regulation of leaf senescence	8.75E-04
20	GO:0080111: DNA demethylation	8.75E-04
21	GO:0009744: response to sucrose	9.27E-04
22	GO:0042255: ribosome assembly	1.01E-03
23	GO:0006353: DNA-templated transcription, termination	1.01E-03
24	GO:0006605: protein targeting	1.01E-03
25	GO:0000105: histidine biosynthetic process	1.01E-03
26	GO:0048564: photosystem I assembly	1.01E-03
27	GO:0009821: alkaloid biosynthetic process	1.28E-03
28	GO:0010112: regulation of systemic acquired resistance	1.28E-03
29	GO:0010380: regulation of chlorophyll biosynthetic process	1.43E-03
30	GO:0043085: positive regulation of catalytic activity	1.75E-03
31	GO:0045037: protein import into chloroplast stroma	1.91E-03
32	GO:0009725: response to hormone	2.08E-03
33	GO:0009767: photosynthetic electron transport chain	2.08E-03
34	GO:0019253: reductive pentose-phosphate cycle	2.26E-03
35	GO:0034605: cellular response to heat	2.26E-03
36	GO:0090351: seedling development	2.44E-03
37	GO:0006289: nucleotide-excision repair	2.81E-03
38	GO:0007017: microtubule-based process	3.01E-03
39	GO:0016226: iron-sulfur cluster assembly	3.41E-03
40	GO:0070417: cellular response to cold	4.04E-03
41	GO:0008033: tRNA processing	4.26E-03
42	GO:0032502: developmental process	5.42E-03
43	GO:0071805: potassium ion transmembrane transport	6.16E-03
44	GO:0015995: chlorophyll biosynthetic process	7.48E-03
45	GO:0009910: negative regulation of flower development	8.88E-03
46	GO:0006813: potassium ion transport	1.40E-02
47	GO:0042545: cell wall modification	1.76E-02
48	GO:0009058: biosynthetic process	2.18E-02
49	GO:0045490: pectin catabolic process	2.65E-02
50	GO:0006470: protein dephosphorylation	2.91E-02
51	GO:0008380: RNA splicing	3.00E-02
52	GO:0042254: ribosome biogenesis	3.66E-02
53	GO:0080167: response to karrikin	4.21E-02
54	GO:0006810: transport	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0042586: peptide deformylase activity	4.88E-05
3	GO:0004424: imidazoleglycerol-phosphate dehydratase activity	4.88E-05
4	GO:0046906: tetrapyrrole binding	4.88E-05
5	GO:0004180: carboxypeptidase activity	2.06E-04
6	GO:0032947: protein complex scaffold	2.06E-04
7	GO:0004848: ureidoglycolate hydrolase activity	2.06E-04
8	GO:0016851: magnesium chelatase activity	3.01E-04
9	GO:0043023: ribosomal large subunit binding	3.01E-04
10	GO:0019899: enzyme binding	8.75E-04
11	GO:0016844: strictosidine synthase activity	1.43E-03
12	GO:0016491: oxidoreductase activity	1.66E-03
13	GO:0051536: iron-sulfur cluster binding	2.81E-03
14	GO:0015079: potassium ion transmembrane transporter activity	3.01E-03
15	GO:0004176: ATP-dependent peptidase activity	3.20E-03
16	GO:0003727: single-stranded RNA binding	3.82E-03
17	GO:0004872: receptor activity	4.94E-03
18	GO:0048038: quinone binding	5.18E-03
19	GO:0004518: nuclease activity	5.42E-03
20	GO:0008237: metallopeptidase activity	6.16E-03
21	GO:0008483: transaminase activity	6.16E-03
22	GO:0008236: serine-type peptidase activity	7.75E-03
23	GO:0004222: metalloendopeptidase activity	8.60E-03
24	GO:0005198: structural molecule activity	1.23E-02
25	GO:0003690: double-stranded DNA binding	1.43E-02
26	GO:0045330: aspartyl esterase activity	1.50E-02
27	GO:0003777: microtubule motor activity	1.50E-02
28	GO:0030599: pectinesterase activity	1.72E-02
29	GO:0019843: rRNA binding	2.10E-02
30	GO:0008565: protein transporter activity	2.39E-02
31	GO:0046910: pectinesterase inhibitor activity	2.52E-02
32	GO:0005515: protein binding	3.24E-02
33	GO:0008168: methyltransferase activity	3.52E-02
34	GO:0016788: hydrolase activity, acting on ester bonds	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.44E-16
2	GO:0009570: chloroplast stroma	7.42E-05
3	GO:0042651: thylakoid membrane	1.33E-04
4	GO:0009535: chloroplast thylakoid membrane	1.55E-04
5	GO:0009528: plastid inner membrane	2.06E-04
6	GO:0030286: dynein complex	4.04E-04
7	GO:0009840: chloroplastic endopeptidase Clp complex	7.50E-04
8	GO:0000123: histone acetyltransferase complex	8.75E-04
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.28E-03
10	GO:0009508: plastid chromosome	2.08E-03
11	GO:0005875: microtubule associated complex	2.62E-03
12	GO:0043234: protein complex	2.62E-03
13	GO:0009295: nucleoid	6.16E-03
14	GO:0009706: chloroplast inner membrane	1.79E-02
15	GO:0005623: cell	2.14E-02
16	GO:0009536: plastid	3.68E-02
17	GO:0009505: plant-type cell wall	3.75E-02
18	GO:0009941: chloroplast envelope	4.13E-02
19	GO:0031969: chloroplast membrane	4.21E-02