GO Enrichment Analysis of Co-expressed Genes with
AT3G15520
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0009409: response to cold | 4.95E-08 |
| 5 | GO:0009631: cold acclimation | 1.70E-05 |
| 6 | GO:0043489: RNA stabilization | 3.50E-05 |
| 7 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.50E-05 |
| 8 | GO:0060627: regulation of vesicle-mediated transport | 3.50E-05 |
| 9 | GO:0010270: photosystem II oxygen evolving complex assembly | 8.78E-05 |
| 10 | GO:2001295: malonyl-CoA biosynthetic process | 1.52E-04 |
| 11 | GO:0009735: response to cytokinin | 1.60E-04 |
| 12 | GO:0006424: glutamyl-tRNA aminoacylation | 2.25E-04 |
| 13 | GO:0006241: CTP biosynthetic process | 2.25E-04 |
| 14 | GO:0006165: nucleoside diphosphate phosphorylation | 2.25E-04 |
| 15 | GO:0006228: UTP biosynthetic process | 2.25E-04 |
| 16 | GO:2000122: negative regulation of stomatal complex development | 3.05E-04 |
| 17 | GO:0010037: response to carbon dioxide | 3.05E-04 |
| 18 | GO:0015976: carbon utilization | 3.05E-04 |
| 19 | GO:0019464: glycine decarboxylation via glycine cleavage system | 3.05E-04 |
| 20 | GO:0006183: GTP biosynthetic process | 3.05E-04 |
| 21 | GO:0045727: positive regulation of translation | 3.05E-04 |
| 22 | GO:0044206: UMP salvage | 3.05E-04 |
| 23 | GO:0042254: ribosome biogenesis | 3.30E-04 |
| 24 | GO:0006412: translation | 3.73E-04 |
| 25 | GO:0032543: mitochondrial translation | 3.89E-04 |
| 26 | GO:0006544: glycine metabolic process | 3.89E-04 |
| 27 | GO:0043097: pyrimidine nucleoside salvage | 3.89E-04 |
| 28 | GO:0006563: L-serine metabolic process | 4.78E-04 |
| 29 | GO:0006828: manganese ion transport | 4.78E-04 |
| 30 | GO:0006206: pyrimidine nucleobase metabolic process | 4.78E-04 |
| 31 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.70E-04 |
| 32 | GO:0010019: chloroplast-nucleus signaling pathway | 5.70E-04 |
| 33 | GO:0010555: response to mannitol | 5.70E-04 |
| 34 | GO:0008610: lipid biosynthetic process | 7.68E-04 |
| 35 | GO:0009642: response to light intensity | 7.68E-04 |
| 36 | GO:0032544: plastid translation | 8.71E-04 |
| 37 | GO:0010206: photosystem II repair | 9.78E-04 |
| 38 | GO:0035999: tetrahydrofolate interconversion | 1.09E-03 |
| 39 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.32E-03 |
| 40 | GO:0016485: protein processing | 1.32E-03 |
| 41 | GO:0006816: calcium ion transport | 1.32E-03 |
| 42 | GO:0005983: starch catabolic process | 1.44E-03 |
| 43 | GO:0045037: protein import into chloroplast stroma | 1.44E-03 |
| 44 | GO:0006633: fatty acid biosynthetic process | 1.78E-03 |
| 45 | GO:0051017: actin filament bundle assembly | 2.12E-03 |
| 46 | GO:0019344: cysteine biosynthetic process | 2.12E-03 |
| 47 | GO:0009116: nucleoside metabolic process | 2.12E-03 |
| 48 | GO:0000027: ribosomal large subunit assembly | 2.12E-03 |
| 49 | GO:0030150: protein import into mitochondrial matrix | 2.12E-03 |
| 50 | GO:0007017: microtubule-based process | 2.26E-03 |
| 51 | GO:0009411: response to UV | 2.71E-03 |
| 52 | GO:0000413: protein peptidyl-prolyl isomerization | 3.20E-03 |
| 53 | GO:0042742: defense response to bacterium | 3.42E-03 |
| 54 | GO:0009749: response to glucose | 3.70E-03 |
| 55 | GO:0019252: starch biosynthetic process | 3.70E-03 |
| 56 | GO:0000302: response to reactive oxygen species | 3.88E-03 |
| 57 | GO:0010583: response to cyclopentenone | 4.06E-03 |
| 58 | GO:0032502: developmental process | 4.06E-03 |
| 59 | GO:0030163: protein catabolic process | 4.24E-03 |
| 60 | GO:0045454: cell redox homeostasis | 4.42E-03 |
| 61 | GO:0009753: response to jasmonic acid | 5.83E-03 |
| 62 | GO:0008152: metabolic process | 5.99E-03 |
| 63 | GO:0009817: defense response to fungus, incompatible interaction | 5.99E-03 |
| 64 | GO:0010119: regulation of stomatal movement | 6.61E-03 |
| 65 | GO:0045087: innate immune response | 7.05E-03 |
| 66 | GO:0016051: carbohydrate biosynthetic process | 7.05E-03 |
| 67 | GO:0009853: photorespiration | 7.05E-03 |
| 68 | GO:0034599: cellular response to oxidative stress | 7.27E-03 |
| 69 | GO:0042542: response to hydrogen peroxide | 8.18E-03 |
| 70 | GO:0009744: response to sucrose | 8.41E-03 |
| 71 | GO:0042538: hyperosmotic salinity response | 9.86E-03 |
| 72 | GO:0006364: rRNA processing | 1.04E-02 |
| 73 | GO:0009585: red, far-red light phototransduction | 1.04E-02 |
| 74 | GO:0009626: plant-type hypersensitive response | 1.22E-02 |
| 75 | GO:0006396: RNA processing | 1.36E-02 |
| 76 | GO:0006508: proteolysis | 1.42E-02 |
| 77 | GO:0042744: hydrogen peroxide catabolic process | 1.71E-02 |
| 78 | GO:0016036: cellular response to phosphate starvation | 1.86E-02 |
| 79 | GO:0007623: circadian rhythm | 1.96E-02 |
| 80 | GO:0010150: leaf senescence | 1.96E-02 |
| 81 | GO:0009451: RNA modification | 1.99E-02 |
| 82 | GO:0009658: chloroplast organization | 2.67E-02 |
| 83 | GO:0046686: response to cadmium ion | 3.05E-02 |
| 84 | GO:0015979: photosynthesis | 3.42E-02 |
| 85 | GO:0006886: intracellular protein transport | 3.62E-02 |
| 86 | GO:0009737: response to abscisic acid | 4.16E-02 |
| 87 | GO:0006397: mRNA processing | 4.24E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0051060: pullulanase activity | 0.00E+00 |
| 4 | GO:0008266: poly(U) RNA binding | 4.76E-07 |
| 5 | GO:0019843: rRNA binding | 4.37E-06 |
| 6 | GO:0051920: peroxiredoxin activity | 5.84E-06 |
| 7 | GO:0016209: antioxidant activity | 1.08E-05 |
| 8 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 3.50E-05 |
| 9 | GO:0005534: galactose binding | 3.50E-05 |
| 10 | GO:0003735: structural constituent of ribosome | 3.96E-05 |
| 11 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 8.78E-05 |
| 12 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 8.78E-05 |
| 13 | GO:0004075: biotin carboxylase activity | 1.52E-04 |
| 14 | GO:0030267: glyoxylate reductase (NADP) activity | 1.52E-04 |
| 15 | GO:0070402: NADPH binding | 1.52E-04 |
| 16 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.52E-04 |
| 17 | GO:0004550: nucleoside diphosphate kinase activity | 2.25E-04 |
| 18 | GO:0004845: uracil phosphoribosyltransferase activity | 3.05E-04 |
| 19 | GO:0016836: hydro-lyase activity | 3.05E-04 |
| 20 | GO:0004372: glycine hydroxymethyltransferase activity | 3.89E-04 |
| 21 | GO:0003989: acetyl-CoA carboxylase activity | 3.89E-04 |
| 22 | GO:0004222: metalloendopeptidase activity | 4.23E-04 |
| 23 | GO:0004556: alpha-amylase activity | 4.78E-04 |
| 24 | GO:0016688: L-ascorbate peroxidase activity | 4.78E-04 |
| 25 | GO:0004130: cytochrome-c peroxidase activity | 4.78E-04 |
| 26 | GO:0004849: uridine kinase activity | 5.70E-04 |
| 27 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 5.70E-04 |
| 28 | GO:0004620: phospholipase activity | 6.66E-04 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.17E-04 |
| 30 | GO:0015288: porin activity | 7.68E-04 |
| 31 | GO:0005384: manganese ion transmembrane transporter activity | 1.09E-03 |
| 32 | GO:0015020: glucuronosyltransferase activity | 1.20E-03 |
| 33 | GO:0015386: potassium:proton antiporter activity | 1.32E-03 |
| 34 | GO:0004089: carbonate dehydratase activity | 1.57E-03 |
| 35 | GO:0015095: magnesium ion transmembrane transporter activity | 1.57E-03 |
| 36 | GO:0015266: protein channel activity | 1.57E-03 |
| 37 | GO:0005528: FK506 binding | 2.12E-03 |
| 38 | GO:0015079: potassium ion transmembrane transporter activity | 2.26E-03 |
| 39 | GO:0005525: GTP binding | 2.63E-03 |
| 40 | GO:0004601: peroxidase activity | 2.99E-03 |
| 41 | GO:0050662: coenzyme binding | 3.53E-03 |
| 42 | GO:0051015: actin filament binding | 4.24E-03 |
| 43 | GO:0005200: structural constituent of cytoskeleton | 4.60E-03 |
| 44 | GO:0008237: metallopeptidase activity | 4.60E-03 |
| 45 | GO:0008375: acetylglucosaminyltransferase activity | 5.38E-03 |
| 46 | GO:0003924: GTPase activity | 5.43E-03 |
| 47 | GO:0003729: mRNA binding | 5.65E-03 |
| 48 | GO:0008236: serine-type peptidase activity | 5.78E-03 |
| 49 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.99E-03 |
| 50 | GO:0005198: structural molecule activity | 9.12E-03 |
| 51 | GO:0005515: protein binding | 1.08E-02 |
| 52 | GO:0015171: amino acid transmembrane transporter activity | 1.11E-02 |
| 53 | GO:0030170: pyridoxal phosphate binding | 1.68E-02 |
| 54 | GO:0004252: serine-type endopeptidase activity | 1.68E-02 |
| 55 | GO:0003824: catalytic activity | 2.15E-02 |
| 56 | GO:0008233: peptidase activity | 3.08E-02 |
| 57 | GO:0016787: hydrolase activity | 4.19E-02 |
| 58 | GO:0046872: metal ion binding | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034426: etioplast membrane | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 8.49E-31 |
| 4 | GO:0009941: chloroplast envelope | 1.47E-25 |
| 5 | GO:0009507: chloroplast | 5.86E-22 |
| 6 | GO:0009579: thylakoid | 5.32E-11 |
| 7 | GO:0009534: chloroplast thylakoid | 1.88E-09 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.00E-08 |
| 9 | GO:0010319: stromule | 6.95E-06 |
| 10 | GO:0009533: chloroplast stromal thylakoid | 8.12E-06 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 3.50E-05 |
| 12 | GO:0000311: plastid large ribosomal subunit | 3.77E-05 |
| 13 | GO:0010287: plastoglobule | 1.05E-04 |
| 14 | GO:0048046: apoplast | 1.71E-04 |
| 15 | GO:0009527: plastid outer membrane | 3.05E-04 |
| 16 | GO:0031969: chloroplast membrane | 4.25E-04 |
| 17 | GO:0031977: thylakoid lumen | 5.72E-04 |
| 18 | GO:0005840: ribosome | 6.18E-04 |
| 19 | GO:0031305: integral component of mitochondrial inner membrane | 7.68E-04 |
| 20 | GO:0046930: pore complex | 8.71E-04 |
| 21 | GO:0045298: tubulin complex | 9.78E-04 |
| 22 | GO:0022626: cytosolic ribosome | 1.33E-03 |
| 23 | GO:0009543: chloroplast thylakoid lumen | 1.42E-03 |
| 24 | GO:0016020: membrane | 1.65E-03 |
| 25 | GO:0000312: plastid small ribosomal subunit | 1.70E-03 |
| 26 | GO:0005759: mitochondrial matrix | 1.78E-03 |
| 27 | GO:0015629: actin cytoskeleton | 2.71E-03 |
| 28 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.87E-03 |
| 29 | GO:0030529: intracellular ribonucleoprotein complex | 4.99E-03 |
| 30 | GO:0009707: chloroplast outer membrane | 5.99E-03 |
| 31 | GO:0005856: cytoskeleton | 9.12E-03 |
| 32 | GO:0022627: cytosolic small ribosomal subunit | 2.39E-02 |
| 33 | GO:0009536: plastid | 2.40E-02 |
| 34 | GO:0005874: microtubule | 3.04E-02 |
| 35 | GO:0022625: cytosolic large ribosomal subunit | 3.23E-02 |