GO Enrichment Analysis of Co-expressed Genes with
AT3G15360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 3 | GO:0009780: photosynthetic NADP+ reduction | 0.00E+00 |
| 4 | GO:0019323: pentose catabolic process | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 1.12E-16 |
| 6 | GO:0009409: response to cold | 4.95E-08 |
| 7 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.06E-06 |
| 8 | GO:0042549: photosystem II stabilization | 4.00E-06 |
| 9 | GO:0009645: response to low light intensity stimulus | 8.12E-06 |
| 10 | GO:0009735: response to cytokinin | 1.21E-05 |
| 11 | GO:0018298: protein-chromophore linkage | 1.33E-05 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 3.20E-05 |
| 13 | GO:0009644: response to high light intensity | 3.37E-05 |
| 14 | GO:0043489: RNA stabilization | 3.50E-05 |
| 15 | GO:0044262: cellular carbohydrate metabolic process | 3.50E-05 |
| 16 | GO:0042550: photosystem I stabilization | 8.78E-05 |
| 17 | GO:0035304: regulation of protein dephosphorylation | 8.78E-05 |
| 18 | GO:0080055: low-affinity nitrate transport | 1.52E-04 |
| 19 | GO:0035436: triose phosphate transmembrane transport | 1.52E-04 |
| 20 | GO:0010731: protein glutathionylation | 2.25E-04 |
| 21 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 2.25E-04 |
| 22 | GO:0010037: response to carbon dioxide | 3.05E-04 |
| 23 | GO:0015976: carbon utilization | 3.05E-04 |
| 24 | GO:0010023: proanthocyanidin biosynthetic process | 3.05E-04 |
| 25 | GO:0009765: photosynthesis, light harvesting | 3.05E-04 |
| 26 | GO:0006109: regulation of carbohydrate metabolic process | 3.05E-04 |
| 27 | GO:0015713: phosphoglycerate transport | 3.05E-04 |
| 28 | GO:2000122: negative regulation of stomatal complex development | 3.05E-04 |
| 29 | GO:0010218: response to far red light | 4.23E-04 |
| 30 | GO:0009643: photosynthetic acclimation | 4.78E-04 |
| 31 | GO:0009637: response to blue light | 4.85E-04 |
| 32 | GO:0034599: cellular response to oxidative stress | 5.06E-04 |
| 33 | GO:0009955: adaxial/abaxial pattern specification | 5.70E-04 |
| 34 | GO:1901259: chloroplast rRNA processing | 5.70E-04 |
| 35 | GO:0042742: defense response to bacterium | 5.75E-04 |
| 36 | GO:0010114: response to red light | 6.19E-04 |
| 37 | GO:0010196: nonphotochemical quenching | 6.66E-04 |
| 38 | GO:0050821: protein stabilization | 7.68E-04 |
| 39 | GO:0030091: protein repair | 7.68E-04 |
| 40 | GO:0032544: plastid translation | 8.71E-04 |
| 41 | GO:0010205: photoinhibition | 1.09E-03 |
| 42 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.09E-03 |
| 43 | GO:0043085: positive regulation of catalytic activity | 1.32E-03 |
| 44 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.32E-03 |
| 45 | GO:0019684: photosynthesis, light reaction | 1.32E-03 |
| 46 | GO:0010582: floral meristem determinacy | 1.44E-03 |
| 47 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.57E-03 |
| 48 | GO:0009767: photosynthetic electron transport chain | 1.57E-03 |
| 49 | GO:0019253: reductive pentose-phosphate cycle | 1.70E-03 |
| 50 | GO:0010207: photosystem II assembly | 1.70E-03 |
| 51 | GO:0010025: wax biosynthetic process | 1.97E-03 |
| 52 | GO:0006289: nucleotide-excision repair | 2.12E-03 |
| 53 | GO:0042335: cuticle development | 3.20E-03 |
| 54 | GO:0006662: glycerol ether metabolic process | 3.36E-03 |
| 55 | GO:0006979: response to oxidative stress | 3.45E-03 |
| 56 | GO:0015986: ATP synthesis coupled proton transport | 3.53E-03 |
| 57 | GO:0000302: response to reactive oxygen species | 3.88E-03 |
| 58 | GO:0010027: thylakoid membrane organization | 4.99E-03 |
| 59 | GO:0009911: positive regulation of flower development | 4.99E-03 |
| 60 | GO:0046686: response to cadmium ion | 5.99E-03 |
| 61 | GO:0009817: defense response to fungus, incompatible interaction | 5.99E-03 |
| 62 | GO:0009631: cold acclimation | 6.61E-03 |
| 63 | GO:0010119: regulation of stomatal movement | 6.61E-03 |
| 64 | GO:0045087: innate immune response | 7.05E-03 |
| 65 | GO:0006855: drug transmembrane transport | 9.36E-03 |
| 66 | GO:0000165: MAPK cascade | 9.61E-03 |
| 67 | GO:0006857: oligopeptide transport | 1.09E-02 |
| 68 | GO:0006096: glycolytic process | 1.17E-02 |
| 69 | GO:0043086: negative regulation of catalytic activity | 1.17E-02 |
| 70 | GO:0055114: oxidation-reduction process | 1.23E-02 |
| 71 | GO:0009624: response to nematode | 1.33E-02 |
| 72 | GO:0006396: RNA processing | 1.36E-02 |
| 73 | GO:0042744: hydrogen peroxide catabolic process | 1.71E-02 |
| 74 | GO:0009451: RNA modification | 1.99E-02 |
| 75 | GO:0009739: response to gibberellin | 2.12E-02 |
| 76 | GO:0030154: cell differentiation | 2.13E-02 |
| 77 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 2.53E-02 |
| 78 | GO:0009658: chloroplast organization | 2.67E-02 |
| 79 | GO:0042254: ribosome biogenesis | 2.71E-02 |
| 80 | GO:0009723: response to ethylene | 2.96E-02 |
| 81 | GO:0080167: response to karrikin | 3.11E-02 |
| 82 | GO:0045454: cell redox homeostasis | 3.54E-02 |
| 83 | GO:0006869: lipid transport | 3.78E-02 |
| 84 | GO:0009751: response to salicylic acid | 4.07E-02 |
| 85 | GO:0009737: response to abscisic acid | 4.16E-02 |
| 86 | GO:0006397: mRNA processing | 4.24E-02 |
| 87 | GO:0009753: response to jasmonic acid | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 2 | GO:0016168: chlorophyll binding | 1.19E-09 |
| 3 | GO:0008266: poly(U) RNA binding | 4.76E-07 |
| 4 | GO:0031409: pigment binding | 7.24E-07 |
| 5 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 3.50E-05 |
| 6 | GO:0010242: oxygen evolving activity | 3.50E-05 |
| 7 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 3.50E-05 |
| 8 | GO:0004618: phosphoglycerate kinase activity | 8.78E-05 |
| 9 | GO:0004750: ribulose-phosphate 3-epimerase activity | 8.78E-05 |
| 10 | GO:0008967: phosphoglycolate phosphatase activity | 8.78E-05 |
| 11 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 1.52E-04 |
| 12 | GO:0071917: triose-phosphate transmembrane transporter activity | 1.52E-04 |
| 13 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 1.52E-04 |
| 14 | GO:0004324: ferredoxin-NADP+ reductase activity | 1.52E-04 |
| 15 | GO:0015120: phosphoglycerate transmembrane transporter activity | 3.05E-04 |
| 16 | GO:0003959: NADPH dehydrogenase activity | 3.89E-04 |
| 17 | GO:0004130: cytochrome-c peroxidase activity | 4.78E-04 |
| 18 | GO:0004602: glutathione peroxidase activity | 5.70E-04 |
| 19 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 5.70E-04 |
| 20 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 5.70E-04 |
| 21 | GO:0015078: hydrogen ion transmembrane transporter activity | 8.71E-04 |
| 22 | GO:0008047: enzyme activator activity | 1.20E-03 |
| 23 | GO:0019843: rRNA binding | 1.42E-03 |
| 24 | GO:0004089: carbonate dehydratase activity | 1.57E-03 |
| 25 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.61E-03 |
| 26 | GO:0004857: enzyme inhibitor activity | 2.12E-03 |
| 27 | GO:0022891: substrate-specific transmembrane transporter activity | 2.71E-03 |
| 28 | GO:0047134: protein-disulfide reductase activity | 3.03E-03 |
| 29 | GO:0001085: RNA polymerase II transcription factor binding | 3.36E-03 |
| 30 | GO:0004791: thioredoxin-disulfide reductase activity | 3.53E-03 |
| 31 | GO:0048038: quinone binding | 3.88E-03 |
| 32 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.24E-03 |
| 33 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 6.61E-03 |
| 34 | GO:0004364: glutathione transferase activity | 8.18E-03 |
| 35 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.19E-02 |
| 36 | GO:0015035: protein disulfide oxidoreductase activity | 1.36E-02 |
| 37 | GO:0015297: antiporter activity | 1.89E-02 |
| 38 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.32E-02 |
| 39 | GO:0016491: oxidoreductase activity | 2.58E-02 |
| 40 | GO:0004601: peroxidase activity | 2.67E-02 |
| 41 | GO:0003682: chromatin binding | 2.78E-02 |
| 42 | GO:0008233: peptidase activity | 3.08E-02 |
| 43 | GO:0003735: structural constituent of ribosome | 3.89E-02 |
| 44 | GO:0046872: metal ion binding | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009535: chloroplast thylakoid membrane | 1.14E-34 |
| 2 | GO:0009579: thylakoid | 3.84E-33 |
| 3 | GO:0009534: chloroplast thylakoid | 5.45E-29 |
| 4 | GO:0009941: chloroplast envelope | 1.47E-25 |
| 5 | GO:0009507: chloroplast | 5.86E-22 |
| 6 | GO:0010287: plastoglobule | 2.20E-13 |
| 7 | GO:0009570: chloroplast stroma | 2.37E-12 |
| 8 | GO:0009538: photosystem I reaction center | 1.00E-10 |
| 9 | GO:0009522: photosystem I | 3.38E-08 |
| 10 | GO:0009523: photosystem II | 3.99E-08 |
| 11 | GO:0030093: chloroplast photosystem I | 8.18E-08 |
| 12 | GO:0010319: stromule | 8.47E-08 |
| 13 | GO:0031977: thylakoid lumen | 5.24E-07 |
| 14 | GO:0030076: light-harvesting complex | 5.91E-07 |
| 15 | GO:0016020: membrane | 1.12E-06 |
| 16 | GO:0048046: apoplast | 2.31E-05 |
| 17 | GO:0009782: photosystem I antenna complex | 3.50E-05 |
| 18 | GO:0016021: integral component of membrane | 5.49E-05 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 1.13E-04 |
| 20 | GO:0009517: PSII associated light-harvesting complex II | 3.05E-04 |
| 21 | GO:0055035: plastid thylakoid membrane | 3.89E-04 |
| 22 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 4.78E-04 |
| 23 | GO:0005763: mitochondrial small ribosomal subunit | 9.78E-04 |
| 24 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 9.78E-04 |
| 25 | GO:0009508: plastid chromosome | 1.57E-03 |
| 26 | GO:0030095: chloroplast photosystem II | 1.70E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 2.26E-03 |
| 28 | GO:0015935: small ribosomal subunit | 2.41E-03 |
| 29 | GO:0019898: extrinsic component of membrane | 3.70E-03 |
| 30 | GO:0031969: chloroplast membrane | 3.70E-03 |
| 31 | GO:0009295: nucleoid | 4.60E-03 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 4.99E-03 |
| 33 | GO:0005667: transcription factor complex | 5.38E-03 |
| 34 | GO:0009706: chloroplast inner membrane | 1.33E-02 |
| 35 | GO:0005840: ribosome | 2.05E-02 |