GO Enrichment Analysis of Co-expressed Genes with
AT3G15080
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 3 | GO:0006364: rRNA processing | 1.59E-16 |
| 4 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.81E-07 |
| 5 | GO:0009553: embryo sac development | 5.83E-07 |
| 6 | GO:0042273: ribosomal large subunit biogenesis | 4.96E-06 |
| 7 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.83E-05 |
| 8 | GO:0000028: ribosomal small subunit assembly | 3.30E-05 |
| 9 | GO:0000469: cleavage involved in rRNA processing | 7.07E-05 |
| 10 | GO:0006390: transcription from mitochondrial promoter | 7.07E-05 |
| 11 | GO:0030490: maturation of SSU-rRNA | 7.07E-05 |
| 12 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.07E-05 |
| 13 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.07E-05 |
| 14 | GO:0043985: histone H4-R3 methylation | 7.07E-05 |
| 15 | GO:0006407: rRNA export from nucleus | 7.07E-05 |
| 16 | GO:0080009: mRNA methylation | 1.70E-04 |
| 17 | GO:0034470: ncRNA processing | 1.70E-04 |
| 18 | GO:0045604: regulation of epidermal cell differentiation | 2.86E-04 |
| 19 | GO:0009561: megagametogenesis | 3.21E-04 |
| 20 | GO:0007276: gamete generation | 4.15E-04 |
| 21 | GO:0009855: determination of bilateral symmetry | 4.15E-04 |
| 22 | GO:0006479: protein methylation | 5.53E-04 |
| 23 | GO:1900864: mitochondrial RNA modification | 5.53E-04 |
| 24 | GO:0046345: abscisic acid catabolic process | 5.53E-04 |
| 25 | GO:0042274: ribosomal small subunit biogenesis | 5.53E-04 |
| 26 | GO:0000460: maturation of 5.8S rRNA | 5.53E-04 |
| 27 | GO:0000380: alternative mRNA splicing, via spliceosome | 7.00E-04 |
| 28 | GO:0000470: maturation of LSU-rRNA | 8.57E-04 |
| 29 | GO:0048444: floral organ morphogenesis | 1.02E-03 |
| 30 | GO:0010077: maintenance of inflorescence meristem identity | 1.02E-03 |
| 31 | GO:0042254: ribosome biogenesis | 1.04E-03 |
| 32 | GO:0045995: regulation of embryonic development | 1.19E-03 |
| 33 | GO:0080186: developmental vegetative growth | 1.19E-03 |
| 34 | GO:0006261: DNA-dependent DNA replication | 1.56E-03 |
| 35 | GO:2000024: regulation of leaf development | 1.76E-03 |
| 36 | GO:0000387: spliceosomal snRNP assembly | 1.97E-03 |
| 37 | GO:1900865: chloroplast RNA modification | 1.97E-03 |
| 38 | GO:0010162: seed dormancy process | 2.19E-03 |
| 39 | GO:0006412: translation | 2.41E-03 |
| 40 | GO:0016569: covalent chromatin modification | 2.62E-03 |
| 41 | GO:0010582: floral meristem determinacy | 2.64E-03 |
| 42 | GO:0010030: positive regulation of seed germination | 3.37E-03 |
| 43 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.89E-03 |
| 44 | GO:0051302: regulation of cell division | 4.17E-03 |
| 45 | GO:0007005: mitochondrion organization | 4.73E-03 |
| 46 | GO:0009451: RNA modification | 4.87E-03 |
| 47 | GO:0009294: DNA mediated transformation | 5.02E-03 |
| 48 | GO:0070417: cellular response to cold | 5.62E-03 |
| 49 | GO:0010501: RNA secondary structure unwinding | 5.93E-03 |
| 50 | GO:0010197: polar nucleus fusion | 6.24E-03 |
| 51 | GO:0009960: endosperm development | 6.24E-03 |
| 52 | GO:0048825: cotyledon development | 6.89E-03 |
| 53 | GO:0009793: embryo development ending in seed dormancy | 8.20E-03 |
| 54 | GO:0016049: cell growth | 1.09E-02 |
| 55 | GO:0045892: negative regulation of transcription, DNA-templated | 1.11E-02 |
| 56 | GO:0048481: plant ovule development | 1.13E-02 |
| 57 | GO:0048527: lateral root development | 1.25E-02 |
| 58 | GO:0000154: rRNA modification | 1.73E-02 |
| 59 | GO:0009555: pollen development | 2.40E-02 |
| 60 | GO:0006396: RNA processing | 2.58E-02 |
| 61 | GO:0009790: embryo development | 3.31E-02 |
| 62 | GO:0007166: cell surface receptor signaling pathway | 4.10E-02 |
| 63 | GO:0008380: RNA splicing | 4.23E-02 |
| 64 | GO:0009651: response to salt stress | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 2 | GO:0034062: 5'-3' RNA polymerase activity | 0.00E+00 |
| 3 | GO:0000166: nucleotide binding | 7.50E-14 |
| 4 | GO:0003723: RNA binding | 4.87E-08 |
| 5 | GO:0030515: snoRNA binding | 1.46E-07 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 2.81E-07 |
| 7 | GO:0042134: rRNA primary transcript binding | 7.07E-05 |
| 8 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 7.07E-05 |
| 9 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.82E-04 |
| 10 | GO:0004407: histone deacetylase activity | 2.00E-04 |
| 11 | GO:0070181: small ribosomal subunit rRNA binding | 2.86E-04 |
| 12 | GO:0003735: structural constituent of ribosome | 3.55E-04 |
| 13 | GO:0003689: DNA clamp loader activity | 7.00E-04 |
| 14 | GO:0003676: nucleic acid binding | 1.51E-03 |
| 15 | GO:0001054: RNA polymerase I activity | 2.41E-03 |
| 16 | GO:0004521: endoribonuclease activity | 2.64E-03 |
| 17 | GO:0001056: RNA polymerase III activity | 2.64E-03 |
| 18 | GO:0008026: ATP-dependent helicase activity | 2.94E-03 |
| 19 | GO:0019843: rRNA binding | 3.46E-03 |
| 20 | GO:0008168: methyltransferase activity | 7.09E-03 |
| 21 | GO:0004004: ATP-dependent RNA helicase activity | 1.05E-02 |
| 22 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.09E-02 |
| 23 | GO:0003746: translation elongation factor activity | 1.33E-02 |
| 24 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.37E-02 |
| 25 | GO:0004519: endonuclease activity | 1.47E-02 |
| 26 | GO:0016887: ATPase activity | 2.10E-02 |
| 27 | GO:0051082: unfolded protein binding | 2.53E-02 |
| 28 | GO:0016787: hydrolase activity | 2.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 3.97E-30 |
| 5 | GO:0032040: small-subunit processome | 2.05E-13 |
| 6 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.88E-10 |
| 7 | GO:0005634: nucleus | 2.27E-08 |
| 8 | GO:0030687: preribosome, large subunit precursor | 1.46E-07 |
| 9 | GO:0070545: PeBoW complex | 2.81E-07 |
| 10 | GO:0005834: heterotrimeric G-protein complex | 1.44E-05 |
| 11 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 7.07E-05 |
| 12 | GO:0030688: preribosome, small subunit precursor | 7.07E-05 |
| 13 | GO:0034245: mitochondrial DNA-directed RNA polymerase complex | 7.07E-05 |
| 14 | GO:0030686: 90S preribosome | 7.07E-05 |
| 15 | GO:0015935: small ribosomal subunit | 2.46E-04 |
| 16 | GO:0005663: DNA replication factor C complex | 5.53E-04 |
| 17 | GO:0022627: cytosolic small ribosomal subunit | 8.38E-04 |
| 18 | GO:0031428: box C/D snoRNP complex | 8.57E-04 |
| 19 | GO:0016363: nuclear matrix | 1.02E-03 |
| 20 | GO:0034399: nuclear periphery | 1.37E-03 |
| 21 | GO:0005763: mitochondrial small ribosomal subunit | 1.76E-03 |
| 22 | GO:0005736: DNA-directed RNA polymerase I complex | 1.76E-03 |
| 23 | GO:0005666: DNA-directed RNA polymerase III complex | 1.97E-03 |
| 24 | GO:0015030: Cajal body | 1.97E-03 |
| 25 | GO:0019013: viral nucleocapsid | 2.88E-03 |
| 26 | GO:0005654: nucleoplasm | 3.37E-03 |
| 27 | GO:0042651: thylakoid membrane | 4.17E-03 |
| 28 | GO:0005759: mitochondrial matrix | 4.34E-03 |
| 29 | GO:0030529: intracellular ribonucleoprotein complex | 9.34E-03 |
| 30 | GO:0005840: ribosome | 1.16E-02 |
| 31 | GO:0015934: large ribosomal subunit | 1.25E-02 |
| 32 | GO:0005618: cell wall | 1.84E-02 |
| 33 | GO:0016607: nuclear speck | 2.26E-02 |
| 34 | GO:0005747: mitochondrial respiratory chain complex I | 2.26E-02 |
| 35 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.69E-02 |
| 36 | GO:0009543: chloroplast thylakoid lumen | 2.96E-02 |