GO Enrichment Analysis of Co-expressed Genes with
AT3G13860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 2 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 3 | GO:0000740: nuclear membrane fusion | 0.00E+00 |
| 4 | GO:0006412: translation | 2.79E-88 |
| 5 | GO:0042254: ribosome biogenesis | 3.57E-28 |
| 6 | GO:0000027: ribosomal large subunit assembly | 4.05E-12 |
| 7 | GO:0009735: response to cytokinin | 1.83E-06 |
| 8 | GO:0000028: ribosomal small subunit assembly | 4.36E-06 |
| 9 | GO:1902626: assembly of large subunit precursor of preribosome | 9.47E-06 |
| 10 | GO:0002181: cytoplasmic translation | 9.47E-06 |
| 11 | GO:0000387: spliceosomal snRNP assembly | 1.20E-05 |
| 12 | GO:0006626: protein targeting to mitochondrion | 3.19E-05 |
| 13 | GO:0009955: adaxial/abaxial pattern specification | 1.27E-04 |
| 14 | GO:0006458: 'de novo' protein folding | 1.27E-04 |
| 15 | GO:0000494: box C/D snoRNA 3'-end processing | 2.36E-04 |
| 16 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.36E-04 |
| 17 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.36E-04 |
| 18 | GO:1990258: histone glutamine methylation | 2.36E-04 |
| 19 | GO:0006407: rRNA export from nucleus | 2.36E-04 |
| 20 | GO:0015801: aromatic amino acid transport | 2.36E-04 |
| 21 | GO:0080156: mitochondrial mRNA modification | 2.47E-04 |
| 22 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 5.24E-04 |
| 23 | GO:0045041: protein import into mitochondrial intermembrane space | 5.24E-04 |
| 24 | GO:0010198: synergid death | 5.24E-04 |
| 25 | GO:0006435: threonyl-tRNA aminoacylation | 5.24E-04 |
| 26 | GO:0015786: UDP-glucose transport | 5.24E-04 |
| 27 | GO:0006432: phenylalanyl-tRNA aminoacylation | 5.24E-04 |
| 28 | GO:0015783: GDP-fucose transport | 8.52E-04 |
| 29 | GO:0042256: mature ribosome assembly | 8.52E-04 |
| 30 | GO:0046168: glycerol-3-phosphate catabolic process | 8.52E-04 |
| 31 | GO:0006954: inflammatory response | 8.52E-04 |
| 32 | GO:0070301: cellular response to hydrogen peroxide | 1.21E-03 |
| 33 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.21E-03 |
| 34 | GO:0006241: CTP biosynthetic process | 1.21E-03 |
| 35 | GO:0072334: UDP-galactose transmembrane transport | 1.21E-03 |
| 36 | GO:0006072: glycerol-3-phosphate metabolic process | 1.21E-03 |
| 37 | GO:0006165: nucleoside diphosphate phosphorylation | 1.21E-03 |
| 38 | GO:0006228: UTP biosynthetic process | 1.21E-03 |
| 39 | GO:0006164: purine nucleotide biosynthetic process | 1.21E-03 |
| 40 | GO:0009558: embryo sac cellularization | 1.21E-03 |
| 41 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.21E-03 |
| 42 | GO:0061077: chaperone-mediated protein folding | 1.23E-03 |
| 43 | GO:0009651: response to salt stress | 1.32E-03 |
| 44 | GO:0007005: mitochondrion organization | 1.35E-03 |
| 45 | GO:0006183: GTP biosynthetic process | 1.62E-03 |
| 46 | GO:0009165: nucleotide biosynthetic process | 1.62E-03 |
| 47 | GO:0000413: protein peptidyl-prolyl isomerization | 1.86E-03 |
| 48 | GO:0010197: polar nucleus fusion | 2.00E-03 |
| 49 | GO:0031167: rRNA methylation | 2.07E-03 |
| 50 | GO:0036065: fucosylation | 2.07E-03 |
| 51 | GO:0000741: karyogamy | 2.55E-03 |
| 52 | GO:0000398: mRNA splicing, via spliceosome | 2.85E-03 |
| 53 | GO:1901001: negative regulation of response to salt stress | 3.06E-03 |
| 54 | GO:0042026: protein refolding | 3.06E-03 |
| 55 | GO:0009612: response to mechanical stimulus | 3.06E-03 |
| 56 | GO:0000245: spliceosomal complex assembly | 3.06E-03 |
| 57 | GO:0050821: protein stabilization | 4.19E-03 |
| 58 | GO:0001510: RNA methylation | 4.79E-03 |
| 59 | GO:0001558: regulation of cell growth | 4.79E-03 |
| 60 | GO:0006526: arginine biosynthetic process | 4.79E-03 |
| 61 | GO:0007338: single fertilization | 5.43E-03 |
| 62 | GO:0009245: lipid A biosynthetic process | 5.43E-03 |
| 63 | GO:0048507: meristem development | 5.43E-03 |
| 64 | GO:0006189: 'de novo' IMP biosynthetic process | 5.43E-03 |
| 65 | GO:0010015: root morphogenesis | 7.50E-03 |
| 66 | GO:0006913: nucleocytoplasmic transport | 7.50E-03 |
| 67 | GO:0008283: cell proliferation | 7.57E-03 |
| 68 | GO:0009644: response to high light intensity | 8.19E-03 |
| 69 | GO:0006820: anion transport | 8.25E-03 |
| 70 | GO:0045037: protein import into chloroplast stroma | 8.25E-03 |
| 71 | GO:0009965: leaf morphogenesis | 8.51E-03 |
| 72 | GO:0010102: lateral root morphogenesis | 9.02E-03 |
| 73 | GO:0048467: gynoecium development | 9.82E-03 |
| 74 | GO:0006446: regulation of translational initiation | 9.82E-03 |
| 75 | GO:0006364: rRNA processing | 1.02E-02 |
| 76 | GO:0009969: xyloglucan biosynthetic process | 1.06E-02 |
| 77 | GO:0009116: nucleoside metabolic process | 1.24E-02 |
| 78 | GO:0030150: protein import into mitochondrial matrix | 1.24E-02 |
| 79 | GO:0051302: regulation of cell division | 1.32E-02 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 1.34E-02 |
| 81 | GO:0009553: embryo sac development | 1.42E-02 |
| 82 | GO:0003333: amino acid transmembrane transport | 1.42E-02 |
| 83 | GO:0006414: translational elongation | 1.83E-02 |
| 84 | GO:0008033: tRNA processing | 1.91E-02 |
| 85 | GO:0006635: fatty acid beta-oxidation | 2.34E-02 |
| 86 | GO:0009567: double fertilization forming a zygote and endosperm | 2.68E-02 |
| 87 | GO:0009627: systemic acquired resistance | 3.29E-02 |
| 88 | GO:0009832: plant-type cell wall biogenesis | 3.80E-02 |
| 89 | GO:0006811: ion transport | 3.93E-02 |
| 90 | GO:0006865: amino acid transport | 4.20E-02 |
| 91 | GO:0009409: response to cold | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0004055: argininosuccinate synthase activity | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 2.26E-110 |
| 4 | GO:0003729: mRNA binding | 4.15E-32 |
| 5 | GO:0019843: rRNA binding | 1.60E-14 |
| 6 | GO:0003723: RNA binding | 2.21E-07 |
| 7 | GO:0008097: 5S rRNA binding | 2.15E-05 |
| 8 | GO:0035614: snRNA stem-loop binding | 2.36E-04 |
| 9 | GO:1990259: histone-glutamine methyltransferase activity | 2.36E-04 |
| 10 | GO:0044183: protein binding involved in protein folding | 5.11E-04 |
| 11 | GO:0015173: aromatic amino acid transmembrane transporter activity | 5.24E-04 |
| 12 | GO:0004839: ubiquitin activating enzyme activity | 5.24E-04 |
| 13 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 5.24E-04 |
| 14 | GO:0004826: phenylalanine-tRNA ligase activity | 5.24E-04 |
| 15 | GO:0004829: threonine-tRNA ligase activity | 5.24E-04 |
| 16 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 5.24E-04 |
| 17 | GO:0030619: U1 snRNA binding | 5.24E-04 |
| 18 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.68E-04 |
| 19 | GO:0008649: rRNA methyltransferase activity | 8.52E-04 |
| 20 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 8.52E-04 |
| 21 | GO:0005457: GDP-fucose transmembrane transporter activity | 8.52E-04 |
| 22 | GO:0004749: ribose phosphate diphosphokinase activity | 1.21E-03 |
| 23 | GO:0005460: UDP-glucose transmembrane transporter activity | 1.21E-03 |
| 24 | GO:0004550: nucleoside diphosphate kinase activity | 1.21E-03 |
| 25 | GO:0005459: UDP-galactose transmembrane transporter activity | 2.07E-03 |
| 26 | GO:0008641: small protein activating enzyme activity | 2.07E-03 |
| 27 | GO:0005275: amine transmembrane transporter activity | 2.07E-03 |
| 28 | GO:0051082: unfolded protein binding | 2.38E-03 |
| 29 | GO:0031177: phosphopantetheine binding | 2.55E-03 |
| 30 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 2.55E-03 |
| 31 | GO:0000035: acyl binding | 3.06E-03 |
| 32 | GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity | 3.61E-03 |
| 33 | GO:0008235: metalloexopeptidase activity | 3.61E-03 |
| 34 | GO:0042162: telomeric DNA binding | 3.61E-03 |
| 35 | GO:0030515: snoRNA binding | 3.61E-03 |
| 36 | GO:0015288: porin activity | 4.19E-03 |
| 37 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.19E-03 |
| 38 | GO:0043022: ribosome binding | 4.19E-03 |
| 39 | GO:0008308: voltage-gated anion channel activity | 4.79E-03 |
| 40 | GO:0008417: fucosyltransferase activity | 5.43E-03 |
| 41 | GO:0003746: translation elongation factor activity | 5.87E-03 |
| 42 | GO:0003697: single-stranded DNA binding | 5.87E-03 |
| 43 | GO:0001055: RNA polymerase II activity | 6.09E-03 |
| 44 | GO:0001054: RNA polymerase I activity | 7.50E-03 |
| 45 | GO:0001056: RNA polymerase III activity | 8.25E-03 |
| 46 | GO:0000049: tRNA binding | 8.25E-03 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.84E-03 |
| 48 | GO:0015266: protein channel activity | 9.02E-03 |
| 49 | GO:0031072: heat shock protein binding | 9.02E-03 |
| 50 | GO:0004176: ATP-dependent peptidase activity | 1.42E-02 |
| 51 | GO:0008514: organic anion transmembrane transporter activity | 1.70E-02 |
| 52 | GO:0004812: aminoacyl-tRNA ligase activity | 1.80E-02 |
| 53 | GO:0008237: metallopeptidase activity | 2.80E-02 |
| 54 | GO:0008236: serine-type peptidase activity | 3.54E-02 |
| 55 | GO:0050897: cobalt ion binding | 4.07E-02 |
| 56 | GO:0003993: acid phosphatase activity | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005840: ribosome | 3.26E-77 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 1.10E-64 |
| 5 | GO:0022626: cytosolic ribosome | 8.60E-62 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 2.60E-36 |
| 7 | GO:0005829: cytosol | 5.65E-28 |
| 8 | GO:0005730: nucleolus | 8.74E-26 |
| 9 | GO:0005737: cytoplasm | 7.43E-25 |
| 10 | GO:0009506: plasmodesma | 3.10E-14 |
| 11 | GO:0005774: vacuolar membrane | 6.42E-14 |
| 12 | GO:0015934: large ribosomal subunit | 1.59E-12 |
| 13 | GO:0016020: membrane | 2.64E-11 |
| 14 | GO:0005773: vacuole | 2.89E-06 |
| 15 | GO:0005685: U1 snRNP | 8.86E-06 |
| 16 | GO:0034719: SMN-Sm protein complex | 9.47E-06 |
| 17 | GO:0005682: U5 snRNP | 3.91E-05 |
| 18 | GO:0005732: small nucleolar ribonucleoprotein complex | 5.00E-05 |
| 19 | GO:0097526: spliceosomal tri-snRNP complex | 6.26E-05 |
| 20 | GO:0005687: U4 snRNP | 6.26E-05 |
| 21 | GO:0005618: cell wall | 6.67E-05 |
| 22 | GO:0015935: small ribosomal subunit | 8.85E-05 |
| 23 | GO:0005689: U12-type spliceosomal complex | 1.27E-04 |
| 24 | GO:0030686: 90S preribosome | 2.36E-04 |
| 25 | GO:0009507: chloroplast | 3.24E-04 |
| 26 | GO:0071011: precatalytic spliceosome | 3.78E-04 |
| 27 | GO:0005686: U2 snRNP | 4.42E-04 |
| 28 | GO:0005886: plasma membrane | 4.74E-04 |
| 29 | GO:0071013: catalytic step 2 spliceosome | 5.11E-04 |
| 30 | GO:0048471: perinuclear region of cytoplasm | 5.11E-04 |
| 31 | GO:0071010: prespliceosome | 5.24E-04 |
| 32 | GO:0005697: telomerase holoenzyme complex | 5.24E-04 |
| 33 | GO:0019013: viral nucleocapsid | 6.63E-04 |
| 34 | GO:0034715: pICln-Sm protein complex | 8.52E-04 |
| 35 | GO:0005758: mitochondrial intermembrane space | 1.02E-03 |
| 36 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.21E-03 |
| 37 | GO:0005739: mitochondrion | 1.35E-03 |
| 38 | GO:0031897: Tic complex | 1.62E-03 |
| 39 | GO:0005681: spliceosomal complex | 1.88E-03 |
| 40 | GO:0031428: box C/D snoRNP complex | 2.55E-03 |
| 41 | GO:0000243: commitment complex | 2.55E-03 |
| 42 | GO:0005762: mitochondrial large ribosomal subunit | 3.06E-03 |
| 43 | GO:0071004: U2-type prespliceosome | 4.19E-03 |
| 44 | GO:0046930: pore complex | 4.79E-03 |
| 45 | GO:0005742: mitochondrial outer membrane translocase complex | 4.79E-03 |
| 46 | GO:0005736: DNA-directed RNA polymerase I complex | 5.43E-03 |
| 47 | GO:0015030: Cajal body | 6.09E-03 |
| 48 | GO:0016604: nuclear body | 6.09E-03 |
| 49 | GO:0005666: DNA-directed RNA polymerase III complex | 6.09E-03 |
| 50 | GO:0000418: DNA-directed RNA polymerase IV complex | 6.78E-03 |
| 51 | GO:0005622: intracellular | 7.06E-03 |
| 52 | GO:0005852: eukaryotic translation initiation factor 3 complex | 7.50E-03 |
| 53 | GO:0032040: small-subunit processome | 8.25E-03 |
| 54 | GO:0005665: DNA-directed RNA polymerase II, core complex | 8.25E-03 |
| 55 | GO:0009508: plastid chromosome | 9.02E-03 |
| 56 | GO:0000419: DNA-directed RNA polymerase V complex | 1.15E-02 |
| 57 | GO:0005747: mitochondrial respiratory chain complex I | 1.25E-02 |
| 58 | GO:0070469: respiratory chain | 1.32E-02 |
| 59 | GO:0005741: mitochondrial outer membrane | 1.42E-02 |
| 60 | GO:0005743: mitochondrial inner membrane | 1.63E-02 |
| 61 | GO:0005759: mitochondrial matrix | 2.30E-02 |
| 62 | GO:0032580: Golgi cisterna membrane | 2.68E-02 |
| 63 | GO:0009295: nucleoid | 2.80E-02 |
| 64 | GO:0030529: intracellular ribonucleoprotein complex | 3.04E-02 |