Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0080127: fruit septum development0.00E+00
9GO:0006114: glycerol biosynthetic process0.00E+00
10GO:0015979: photosynthesis3.69E-08
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.26E-07
12GO:0010027: thylakoid membrane organization1.26E-05
13GO:0061077: chaperone-mediated protein folding2.07E-05
14GO:0009773: photosynthetic electron transport in photosystem I8.73E-05
15GO:0010021: amylopectin biosynthetic process1.14E-04
16GO:0006109: regulation of carbohydrate metabolic process1.14E-04
17GO:0006021: inositol biosynthetic process1.14E-04
18GO:0015995: chlorophyll biosynthetic process2.21E-04
19GO:0042549: photosystem II stabilization2.51E-04
20GO:0010190: cytochrome b6f complex assembly2.51E-04
21GO:0046855: inositol phosphate dephosphorylation2.51E-04
22GO:1901259: chloroplast rRNA processing3.37E-04
23GO:0042371: vitamin K biosynthetic process4.45E-04
24GO:0065002: intracellular protein transmembrane transport4.45E-04
25GO:0043686: co-translational protein modification4.45E-04
26GO:0046167: glycerol-3-phosphate biosynthetic process4.45E-04
27GO:0043007: maintenance of rDNA4.45E-04
28GO:0034337: RNA folding4.45E-04
29GO:0010450: inflorescence meristem growth4.45E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.45E-04
31GO:0010493: Lewis a epitope biosynthetic process4.45E-04
32GO:0043953: protein transport by the Tat complex4.45E-04
33GO:0046520: sphingoid biosynthetic process4.45E-04
34GO:0000481: maturation of 5S rRNA4.45E-04
35GO:0048564: photosystem I assembly5.41E-04
36GO:0009657: plastid organization6.60E-04
37GO:0010206: photosystem II repair7.90E-04
38GO:0080181: lateral root branching9.61E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly9.61E-04
40GO:0006741: NADP biosynthetic process9.61E-04
41GO:0006432: phenylalanyl-tRNA aminoacylation9.61E-04
42GO:0018026: peptidyl-lysine monomethylation9.61E-04
43GO:0006650: glycerophospholipid metabolic process9.61E-04
44GO:0043085: positive regulation of catalytic activity1.25E-03
45GO:0006790: sulfur compound metabolic process1.43E-03
46GO:0005977: glycogen metabolic process1.57E-03
47GO:0045165: cell fate commitment1.57E-03
48GO:0019674: NAD metabolic process1.57E-03
49GO:0046168: glycerol-3-phosphate catabolic process1.57E-03
50GO:0006954: inflammatory response1.57E-03
51GO:0090391: granum assembly1.57E-03
52GO:0009405: pathogenesis1.57E-03
53GO:2000012: regulation of auxin polar transport1.62E-03
54GO:0009658: chloroplast organization1.69E-03
55GO:0016311: dephosphorylation1.71E-03
56GO:0006810: transport1.81E-03
57GO:0046854: phosphatidylinositol phosphorylation2.05E-03
58GO:0019853: L-ascorbic acid biosynthetic process2.05E-03
59GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.27E-03
60GO:2001141: regulation of RNA biosynthetic process2.27E-03
61GO:0019363: pyridine nucleotide biosynthetic process2.27E-03
62GO:0006020: inositol metabolic process2.27E-03
63GO:0007231: osmosensory signaling pathway2.27E-03
64GO:0010239: chloroplast mRNA processing2.27E-03
65GO:0009052: pentose-phosphate shunt, non-oxidative branch2.27E-03
66GO:0006072: glycerol-3-phosphate metabolic process2.27E-03
67GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.27E-03
68GO:0050482: arachidonic acid secretion2.27E-03
69GO:0015994: chlorophyll metabolic process3.05E-03
70GO:0015846: polyamine transport3.05E-03
71GO:0022622: root system development3.05E-03
72GO:0033500: carbohydrate homeostasis3.05E-03
73GO:0019915: lipid storage3.08E-03
74GO:0019748: secondary metabolic process3.37E-03
75GO:0031365: N-terminal protein amino acid modification3.90E-03
76GO:1902183: regulation of shoot apical meristem development3.90E-03
77GO:0010158: abaxial cell fate specification3.90E-03
78GO:0006465: signal peptide processing3.90E-03
79GO:0000304: response to singlet oxygen3.90E-03
80GO:0016558: protein import into peroxisome matrix3.90E-03
81GO:0006564: L-serine biosynthetic process3.90E-03
82GO:0010236: plastoquinone biosynthetic process3.90E-03
83GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.83E-03
84GO:0042793: transcription from plastid promoter4.83E-03
85GO:0003006: developmental process involved in reproduction4.83E-03
86GO:0009117: nucleotide metabolic process4.83E-03
87GO:0006662: glycerol ether metabolic process5.06E-03
88GO:0042372: phylloquinone biosynthetic process5.83E-03
89GO:0042026: protein refolding5.83E-03
90GO:0006458: 'de novo' protein folding5.83E-03
91GO:0030488: tRNA methylation5.83E-03
92GO:0019252: starch biosynthetic process5.84E-03
93GO:0043086: negative regulation of catalytic activity6.18E-03
94GO:0032880: regulation of protein localization6.89E-03
95GO:0009772: photosynthetic electron transport in photosystem II6.89E-03
96GO:0010196: nonphotochemical quenching6.89E-03
97GO:0000105: histidine biosynthetic process8.02E-03
98GO:0009231: riboflavin biosynthetic process8.02E-03
99GO:0016559: peroxisome fission8.02E-03
100GO:0006644: phospholipid metabolic process8.02E-03
101GO:0005978: glycogen biosynthetic process8.02E-03
102GO:0030091: protein repair8.02E-03
103GO:0009642: response to light intensity8.02E-03
104GO:0032508: DNA duplex unwinding8.02E-03
105GO:0017004: cytochrome complex assembly9.21E-03
106GO:0010093: specification of floral organ identity9.21E-03
107GO:0071482: cellular response to light stimulus9.21E-03
108GO:0032544: plastid translation9.21E-03
109GO:0009627: systemic acquired resistance1.01E-02
110GO:2000024: regulation of leaf development1.05E-02
111GO:0048507: meristem development1.05E-02
112GO:0005982: starch metabolic process1.18E-02
113GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
114GO:0006782: protoporphyrinogen IX biosynthetic process1.31E-02
115GO:0009684: indoleacetic acid biosynthetic process1.46E-02
116GO:0006816: calcium ion transport1.46E-02
117GO:0019684: photosynthesis, light reaction1.46E-02
118GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
119GO:0009073: aromatic amino acid family biosynthetic process1.46E-02
120GO:1903507: negative regulation of nucleic acid-templated transcription1.46E-02
121GO:0006415: translational termination1.46E-02
122GO:0006352: DNA-templated transcription, initiation1.46E-02
123GO:0018119: peptidyl-cysteine S-nitrosylation1.46E-02
124GO:0009637: response to blue light1.51E-02
125GO:0034599: cellular response to oxidative stress1.58E-02
126GO:0005983: starch catabolic process1.60E-02
127GO:0010582: floral meristem determinacy1.60E-02
128GO:0032259: methylation1.63E-02
129GO:0006006: glucose metabolic process1.75E-02
130GO:0048467: gynoecium development1.91E-02
131GO:0010207: photosystem II assembly1.91E-02
132GO:0010020: chloroplast fission1.91E-02
133GO:0009933: meristem structural organization1.91E-02
134GO:0019253: reductive pentose-phosphate cycle1.91E-02
135GO:0010114: response to red light1.95E-02
136GO:0070588: calcium ion transmembrane transport2.07E-02
137GO:0010030: positive regulation of seed germination2.07E-02
138GO:0006833: water transport2.24E-02
139GO:0000162: tryptophan biosynthetic process2.24E-02
140GO:0009944: polarity specification of adaxial/abaxial axis2.41E-02
141GO:0019953: sexual reproduction2.59E-02
142GO:0016575: histone deacetylation2.59E-02
143GO:0006418: tRNA aminoacylation for protein translation2.59E-02
144GO:0009768: photosynthesis, light harvesting in photosystem I2.59E-02
145GO:0006364: rRNA processing2.63E-02
146GO:0055114: oxidation-reduction process2.65E-02
147GO:0048511: rhythmic process2.77E-02
148GO:0048278: vesicle docking2.77E-02
149GO:0031408: oxylipin biosynthetic process2.77E-02
150GO:0009409: response to cold2.91E-02
151GO:2000022: regulation of jasmonic acid mediated signaling pathway2.95E-02
152GO:0006096: glycolytic process3.11E-02
153GO:0006012: galactose metabolic process3.14E-02
154GO:0071369: cellular response to ethylene stimulus3.14E-02
155GO:0009561: megagametogenesis3.33E-02
156GO:0016117: carotenoid biosynthetic process3.53E-02
157GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.53E-02
158GO:0008284: positive regulation of cell proliferation3.53E-02
159GO:0080167: response to karrikin3.57E-02
160GO:0005975: carbohydrate metabolic process3.59E-02
161GO:0000413: protein peptidyl-prolyl isomerization3.73E-02
162GO:0042631: cellular response to water deprivation3.73E-02
163GO:0034220: ion transmembrane transport3.73E-02
164GO:0006396: RNA processing3.85E-02
165GO:0048868: pollen tube development3.94E-02
166GO:0009958: positive gravitropism3.94E-02
167GO:0006520: cellular amino acid metabolic process3.94E-02
168GO:0010154: fruit development3.94E-02
169GO:0061025: membrane fusion4.14E-02
170GO:0042752: regulation of circadian rhythm4.14E-02
171GO:0006412: translation4.15E-02
172GO:0008654: phospholipid biosynthetic process4.36E-02
173GO:0045454: cell redox homeostasis4.45E-02
174GO:0006635: fatty acid beta-oxidation4.57E-02
175GO:0071554: cell wall organization or biogenesis4.57E-02
176GO:0002229: defense response to oomycetes4.57E-02
177GO:0032502: developmental process4.79E-02
178GO:0010583: response to cyclopentenone4.79E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
3GO:0043136: glycerol-3-phosphatase activity0.00E+00
4GO:0000121: glycerol-1-phosphatase activity0.00E+00
5GO:0010349: L-galactose dehydrogenase activity0.00E+00
6GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
9GO:0019808: polyamine binding0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0042903: tubulin deacetylase activity0.00E+00
13GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
14GO:0043014: alpha-tubulin binding0.00E+00
15GO:0042623: ATPase activity, coupled0.00E+00
16GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.27E-09
18GO:0005528: FK506 binding8.00E-09
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.23E-06
20GO:0052832: inositol monophosphate 3-phosphatase activity8.79E-06
21GO:0008934: inositol monophosphate 1-phosphatase activity8.79E-06
22GO:0052833: inositol monophosphate 4-phosphatase activity8.79E-06
23GO:0004045: aminoacyl-tRNA hydrolase activity1.14E-04
24GO:0004857: enzyme inhibitor activity2.51E-04
25GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.37E-04
26GO:0042736: NADH kinase activity4.45E-04
27GO:0010347: L-galactose-1-phosphate phosphatase activity4.45E-04
28GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.45E-04
29GO:0000170: sphingosine hydroxylase activity4.45E-04
30GO:0046920: alpha-(1->3)-fucosyltransferase activity4.45E-04
31GO:0050308: sugar-phosphatase activity4.45E-04
32GO:0019203: carbohydrate phosphatase activity4.45E-04
33GO:0042586: peptide deformylase activity4.45E-04
34GO:0004033: aldo-keto reductase (NADP) activity5.41E-04
35GO:0048038: quinone binding8.18E-04
36GO:0047746: chlorophyllase activity9.61E-04
37GO:0016868: intramolecular transferase activity, phosphotransferases9.61E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity9.61E-04
39GO:0004617: phosphoglycerate dehydrogenase activity9.61E-04
40GO:0003844: 1,4-alpha-glucan branching enzyme activity9.61E-04
41GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.61E-04
42GO:0042284: sphingolipid delta-4 desaturase activity9.61E-04
43GO:0019172: glyoxalase III activity9.61E-04
44GO:0019156: isoamylase activity9.61E-04
45GO:0030385: ferredoxin:thioredoxin reductase activity9.61E-04
46GO:0004826: phenylalanine-tRNA ligase activity9.61E-04
47GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.61E-04
48GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.61E-04
49GO:0008047: enzyme activator activity1.08E-03
50GO:0044183: protein binding involved in protein folding1.25E-03
51GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.57E-03
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.57E-03
53GO:0043169: cation binding1.57E-03
54GO:0005504: fatty acid binding1.57E-03
55GO:0090729: toxin activity1.57E-03
56GO:0004751: ribose-5-phosphate isomerase activity1.57E-03
57GO:0031072: heat shock protein binding1.62E-03
58GO:0019843: rRNA binding2.19E-03
59GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.27E-03
60GO:0035529: NADH pyrophosphatase activity2.27E-03
61GO:0048487: beta-tubulin binding2.27E-03
62GO:0016149: translation release factor activity, codon specific2.27E-03
63GO:0016851: magnesium chelatase activity2.27E-03
64GO:0003993: acid phosphatase activity2.61E-03
65GO:0004659: prenyltransferase activity3.05E-03
66GO:0016279: protein-lysine N-methyltransferase activity3.05E-03
67GO:0001053: plastid sigma factor activity3.05E-03
68GO:0080032: methyl jasmonate esterase activity3.05E-03
69GO:0016987: sigma factor activity3.05E-03
70GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.05E-03
71GO:0045430: chalcone isomerase activity3.05E-03
72GO:0004623: phospholipase A2 activity3.90E-03
73GO:0004040: amidase activity3.90E-03
74GO:0047134: protein-disulfide reductase activity4.34E-03
75GO:0051287: NAD binding4.35E-03
76GO:2001070: starch binding4.83E-03
77GO:0080030: methyl indole-3-acetate esterase activity4.83E-03
78GO:0004556: alpha-amylase activity4.83E-03
79GO:0004462: lactoylglutathione lyase activity4.83E-03
80GO:0016462: pyrophosphatase activity4.83E-03
81GO:0042578: phosphoric ester hydrolase activity4.83E-03
82GO:0004791: thioredoxin-disulfide reductase activity5.44E-03
83GO:0008195: phosphatidate phosphatase activity5.83E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.83E-03
85GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.13E-03
86GO:0051082: unfolded protein binding7.83E-03
87GO:0043022: ribosome binding8.02E-03
88GO:0015035: protein disulfide oxidoreductase activity8.13E-03
89GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.21E-03
90GO:0003951: NAD+ kinase activity9.21E-03
91GO:0008173: RNA methyltransferase activity9.21E-03
92GO:0003747: translation release factor activity1.05E-02
93GO:0008417: fucosyltransferase activity1.05E-02
94GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.05E-02
95GO:0016787: hydrolase activity1.20E-02
96GO:0004521: endoribonuclease activity1.60E-02
97GO:0000049: tRNA binding1.60E-02
98GO:0005262: calcium channel activity1.75E-02
99GO:0004565: beta-galactosidase activity1.75E-02
100GO:0008083: growth factor activity1.91E-02
101GO:0004185: serine-type carboxypeptidase activity1.95E-02
102GO:0043621: protein self-association2.11E-02
103GO:0005198: structural molecule activity2.19E-02
104GO:0003887: DNA-directed DNA polymerase activity2.24E-02
105GO:0031409: pigment binding2.24E-02
106GO:0004407: histone deacetylase activity2.41E-02
107GO:0003714: transcription corepressor activity2.41E-02
108GO:0043424: protein histidine kinase binding2.59E-02
109GO:0008168: methyltransferase activity2.60E-02
110GO:0016491: oxidoreductase activity2.76E-02
111GO:0016788: hydrolase activity, acting on ester bonds2.80E-02
112GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.21E-02
113GO:0003756: protein disulfide isomerase activity3.33E-02
114GO:0004812: aminoacyl-tRNA ligase activity3.53E-02
115GO:0005509: calcium ion binding3.83E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0042597: periplasmic space0.00E+00
4GO:0010368: chloroplast isoamylase complex0.00E+00
5GO:0009507: chloroplast1.66E-64
6GO:0009535: chloroplast thylakoid membrane4.01E-32
7GO:0009570: chloroplast stroma1.57E-25
8GO:0009534: chloroplast thylakoid8.19E-20
9GO:0009543: chloroplast thylakoid lumen6.60E-18
10GO:0009941: chloroplast envelope1.42E-13
11GO:0009579: thylakoid1.01E-10
12GO:0031977: thylakoid lumen4.18E-10
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.03E-08
14GO:0030095: chloroplast photosystem II6.60E-06
15GO:0009654: photosystem II oxygen evolving complex1.69E-05
16GO:0009538: photosystem I reaction center2.10E-05
17GO:0010287: plastoglobule6.00E-05
18GO:0019898: extrinsic component of membrane7.46E-05
19GO:0031361: integral component of thylakoid membrane4.45E-04
20GO:0009515: granal stacked thylakoid4.45E-04
21GO:0005787: signal peptidase complex4.45E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex9.61E-04
23GO:0010007: magnesium chelatase complex1.57E-03
24GO:0033281: TAT protein transport complex1.57E-03
25GO:0009508: plastid chromosome1.62E-03
26GO:0005840: ribosome2.24E-03
27GO:0042646: plastid nucleoid2.27E-03
28GO:0009331: glycerol-3-phosphate dehydrogenase complex2.27E-03
29GO:0031969: chloroplast membrane2.48E-03
30GO:0009522: photosystem I5.44E-03
31GO:0009533: chloroplast stromal thylakoid6.89E-03
32GO:0009501: amyloplast8.02E-03
33GO:0009295: nucleoid8.07E-03
34GO:0030529: intracellular ribonucleoprotein complex9.07E-03
35GO:0042644: chloroplast nucleoid1.05E-02
36GO:0055028: cortical microtubule1.31E-02
37GO:0012511: monolayer-surrounded lipid storage body1.46E-02
38GO:0090404: pollen tube tip1.46E-02
39GO:0032040: small-subunit processome1.60E-02
40GO:0030076: light-harvesting complex2.07E-02
41GO:0043234: protein complex2.24E-02
42GO:0042651: thylakoid membrane2.59E-02
43GO:0015935: small ribosomal subunit2.77E-02
44GO:0031410: cytoplasmic vesicle2.95E-02
45GO:0009523: photosystem II4.36E-02
46GO:0009504: cell plate4.36E-02
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Gene type



Gene DE type