GO Enrichment Analysis of Co-expressed Genes with
AT3G13670
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 2 | GO:0034724: DNA replication-independent nucleosome organization | 2.75E-06 |
| 3 | GO:0035280: miRNA loading onto RISC involved in gene silencing by miRNA | 2.75E-06 |
| 4 | GO:1901181: negative regulation of cellular response to caffeine | 2.75E-06 |
| 5 | GO:0010042: response to manganese ion | 7.70E-06 |
| 6 | GO:0051170: nuclear import | 7.70E-06 |
| 7 | GO:0006610: ribosomal protein import into nucleus | 7.70E-06 |
| 8 | GO:0032465: regulation of cytokinesis | 2.28E-05 |
| 9 | GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter | 3.25E-05 |
| 10 | GO:0006544: glycine metabolic process | 4.33E-05 |
| 11 | GO:0006563: L-serine metabolic process | 5.52E-05 |
| 12 | GO:0006828: manganese ion transport | 5.52E-05 |
| 13 | GO:0000060: protein import into nucleus, translocation | 5.52E-05 |
| 14 | GO:0030026: cellular manganese ion homeostasis | 8.18E-05 |
| 15 | GO:0006368: transcription elongation from RNA polymerase II promoter | 8.18E-05 |
| 16 | GO:0006607: NLS-bearing protein import into nucleus | 1.27E-04 |
| 17 | GO:0035999: tetrahydrofolate interconversion | 1.44E-04 |
| 18 | GO:0006896: Golgi to vacuole transport | 1.60E-04 |
| 19 | GO:0006816: calcium ion transport | 1.78E-04 |
| 20 | GO:0008285: negative regulation of cell proliferation | 1.78E-04 |
| 21 | GO:0030433: ubiquitin-dependent ERAD pathway | 3.52E-04 |
| 22 | GO:0042147: retrograde transport, endosome to Golgi | 4.16E-04 |
| 23 | GO:0016579: protein deubiquitination | 6.45E-04 |
| 24 | GO:0000209: protein polyubiquitination | 1.11E-03 |
| 25 | GO:0006260: DNA replication | 1.23E-03 |
| 26 | GO:0006417: regulation of translation | 1.41E-03 |
| 27 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.46E-03 |
| 28 | GO:0045892: negative regulation of transcription, DNA-templated | 4.24E-03 |
| 29 | GO:0016042: lipid catabolic process | 4.74E-03 |
| 30 | GO:0006281: DNA repair | 4.84E-03 |
| 31 | GO:0048364: root development | 4.98E-03 |
| 32 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 5.87E-03 |
| 33 | GO:0045893: positive regulation of transcription, DNA-templated | 7.92E-03 |
| 34 | GO:0006511: ubiquitin-dependent protein catabolic process | 8.91E-03 |
| 35 | GO:0030154: cell differentiation | 1.25E-02 |
| 36 | GO:0046686: response to cadmium ion | 1.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 2 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 3 | GO:0034450: ubiquitin-ubiquitin ligase activity | 2.75E-06 |
| 4 | GO:0070628: proteasome binding | 3.25E-05 |
| 5 | GO:0019905: syntaxin binding | 3.25E-05 |
| 6 | GO:0004372: glycine hydroxymethyltransferase activity | 4.33E-05 |
| 7 | GO:0031491: nucleosome binding | 6.80E-05 |
| 8 | GO:0004630: phospholipase D activity | 1.11E-04 |
| 9 | GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity | 1.11E-04 |
| 10 | GO:0008139: nuclear localization sequence binding | 2.14E-04 |
| 11 | GO:0005388: calcium-transporting ATPase activity | 2.14E-04 |
| 12 | GO:0003713: transcription coactivator activity | 4.60E-04 |
| 13 | GO:0008536: Ran GTPase binding | 4.60E-04 |
| 14 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 5.27E-04 |
| 15 | GO:0004197: cysteine-type endopeptidase activity | 5.50E-04 |
| 16 | GO:0042393: histone binding | 1.00E-03 |
| 17 | GO:0035091: phosphatidylinositol binding | 1.14E-03 |
| 18 | GO:0030170: pyridoxal phosphate binding | 2.07E-03 |
| 19 | GO:0008565: protein transporter activity | 2.17E-03 |
| 20 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 4.20E-03 |
| 21 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 4.51E-03 |
| 22 | GO:0044212: transcription regulatory region DNA binding | 1.18E-02 |
| 23 | GO:0003824: catalytic activity | 1.26E-02 |
| 24 | GO:0003729: mRNA binding | 1.56E-02 |
| 25 | GO:0043565: sequence-specific DNA binding | 3.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035101: FACT complex | 7.70E-06 |
| 2 | GO:0005719: nuclear euchromatin | 2.28E-05 |
| 3 | GO:0034399: nuclear periphery | 9.62E-05 |
| 4 | GO:0030176: integral component of endoplasmic reticulum membrane | 2.52E-04 |
| 5 | GO:0005839: proteasome core complex | 3.32E-04 |
| 6 | GO:0031410: cytoplasmic vesicle | 3.52E-04 |
| 7 | GO:0031965: nuclear membrane | 5.05E-04 |
| 8 | GO:0000151: ubiquitin ligase complex | 7.94E-04 |
| 9 | GO:0005643: nuclear pore | 7.94E-04 |
| 10 | GO:0005654: nucleoplasm | 1.89E-03 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 1.93E-03 |
| 12 | GO:0005829: cytosol | 1.08E-02 |
| 13 | GO:0005789: endoplasmic reticulum membrane | 1.59E-02 |
| 14 | GO:0005730: nucleolus | 1.71E-02 |
| 15 | GO:0005774: vacuolar membrane | 2.86E-02 |
| 16 | GO:0005634: nucleus | 3.80E-02 |
| 17 | GO:0005783: endoplasmic reticulum | 4.72E-02 |