GO Enrichment Analysis of Co-expressed Genes with
AT3G13490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine | 0.00E+00 |
| 4 | GO:0009661: chromoplast organization | 0.00E+00 |
| 5 | GO:0016120: carotene biosynthetic process | 3.49E-08 |
| 6 | GO:0010343: singlet oxygen-mediated programmed cell death | 3.58E-07 |
| 7 | GO:0080005: photosystem stoichiometry adjustment | 3.58E-07 |
| 8 | GO:0000304: response to singlet oxygen | 1.04E-05 |
| 9 | GO:0016117: carotenoid biosynthetic process | 1.51E-05 |
| 10 | GO:0010190: cytochrome b6f complex assembly | 1.59E-05 |
| 11 | GO:0010362: negative regulation of anion channel activity by blue light | 8.09E-05 |
| 12 | GO:0071266: 'de novo' L-methionine biosynthetic process | 8.09E-05 |
| 13 | GO:0019346: transsulfuration | 8.09E-05 |
| 14 | GO:0019343: cysteine biosynthetic process via cystathionine | 8.09E-05 |
| 15 | GO:0071461: cellular response to redox state | 8.09E-05 |
| 16 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 8.09E-05 |
| 17 | GO:0009658: chloroplast organization | 1.63E-04 |
| 18 | GO:2000030: regulation of response to red or far red light | 1.93E-04 |
| 19 | GO:2000071: regulation of defense response by callose deposition | 1.93E-04 |
| 20 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.93E-04 |
| 21 | GO:0016226: iron-sulfur cluster assembly | 3.23E-04 |
| 22 | GO:0006696: ergosterol biosynthetic process | 3.24E-04 |
| 23 | GO:0071836: nectar secretion | 3.24E-04 |
| 24 | GO:0010118: stomatal movement | 4.48E-04 |
| 25 | GO:0050482: arachidonic acid secretion | 4.66E-04 |
| 26 | GO:2001141: regulation of RNA biosynthetic process | 4.66E-04 |
| 27 | GO:0010371: regulation of gibberellin biosynthetic process | 4.66E-04 |
| 28 | GO:0006552: leucine catabolic process | 6.21E-04 |
| 29 | GO:0009902: chloroplast relocation | 6.21E-04 |
| 30 | GO:0010021: amylopectin biosynthetic process | 6.21E-04 |
| 31 | GO:0006555: methionine metabolic process | 9.59E-04 |
| 32 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 9.59E-04 |
| 33 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.14E-03 |
| 34 | GO:0006508: proteolysis | 1.21E-03 |
| 35 | GO:0006644: phospholipid metabolic process | 1.54E-03 |
| 36 | GO:0048564: photosystem I assembly | 1.54E-03 |
| 37 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.54E-03 |
| 38 | GO:0009704: de-etiolation | 1.54E-03 |
| 39 | GO:0050821: protein stabilization | 1.54E-03 |
| 40 | GO:0009231: riboflavin biosynthetic process | 1.54E-03 |
| 41 | GO:0006102: isocitrate metabolic process | 1.54E-03 |
| 42 | GO:0071482: cellular response to light stimulus | 1.76E-03 |
| 43 | GO:0009821: alkaloid biosynthetic process | 1.98E-03 |
| 44 | GO:0009638: phototropism | 2.22E-03 |
| 45 | GO:0045036: protein targeting to chloroplast | 2.46E-03 |
| 46 | GO:0009682: induced systemic resistance | 2.71E-03 |
| 47 | GO:0008285: negative regulation of cell proliferation | 2.71E-03 |
| 48 | GO:0006879: cellular iron ion homeostasis | 2.71E-03 |
| 49 | GO:0006352: DNA-templated transcription, initiation | 2.71E-03 |
| 50 | GO:0055114: oxidation-reduction process | 2.95E-03 |
| 51 | GO:0005986: sucrose biosynthetic process | 3.24E-03 |
| 52 | GO:0010207: photosystem II assembly | 3.52E-03 |
| 53 | GO:0010073: meristem maintenance | 4.70E-03 |
| 54 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 5.34E-03 |
| 55 | GO:0010227: floral organ abscission | 5.67E-03 |
| 56 | GO:0010228: vegetative to reproductive phase transition of meristem | 5.95E-03 |
| 57 | GO:0035556: intracellular signal transduction | 5.99E-03 |
| 58 | GO:0006817: phosphate ion transport | 6.01E-03 |
| 59 | GO:0006662: glycerol ether metabolic process | 7.06E-03 |
| 60 | GO:0010182: sugar mediated signaling pathway | 7.06E-03 |
| 61 | GO:0006457: protein folding | 7.76E-03 |
| 62 | GO:0009791: post-embryonic development | 7.79E-03 |
| 63 | GO:0019252: starch biosynthetic process | 7.79E-03 |
| 64 | GO:0002229: defense response to oomycetes | 8.17E-03 |
| 65 | GO:0030163: protein catabolic process | 8.94E-03 |
| 66 | GO:0016126: sterol biosynthetic process | 1.06E-02 |
| 67 | GO:0009816: defense response to bacterium, incompatible interaction | 1.10E-02 |
| 68 | GO:0046777: protein autophosphorylation | 1.17E-02 |
| 69 | GO:0006950: response to stress | 1.19E-02 |
| 70 | GO:0018298: protein-chromophore linkage | 1.27E-02 |
| 71 | GO:0000160: phosphorelay signal transduction system | 1.32E-02 |
| 72 | GO:0010043: response to zinc ion | 1.41E-02 |
| 73 | GO:0007568: aging | 1.41E-02 |
| 74 | GO:0009867: jasmonic acid mediated signaling pathway | 1.51E-02 |
| 75 | GO:0009637: response to blue light | 1.51E-02 |
| 76 | GO:0034599: cellular response to oxidative stress | 1.56E-02 |
| 77 | GO:0006099: tricarboxylic acid cycle | 1.56E-02 |
| 78 | GO:0009640: photomorphogenesis | 1.80E-02 |
| 79 | GO:0031347: regulation of defense response | 2.07E-02 |
| 80 | GO:0009809: lignin biosynthetic process | 2.23E-02 |
| 81 | GO:0006417: regulation of translation | 2.40E-02 |
| 82 | GO:0009620: response to fungus | 2.69E-02 |
| 83 | GO:0009058: biosynthetic process | 3.49E-02 |
| 84 | GO:0007623: circadian rhythm | 4.23E-02 |
| 85 | GO:0009451: RNA modification | 4.30E-02 |
| 86 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.58E-02 |
| 87 | GO:0010468: regulation of gene expression | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 2 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 4 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 5 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 6 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 7 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 8 | GO:0004180: carboxypeptidase activity | 1.37E-06 |
| 9 | GO:0004121: cystathionine beta-lyase activity | 8.09E-05 |
| 10 | GO:0051996: squalene synthase activity | 8.09E-05 |
| 11 | GO:0016783: sulfurtransferase activity | 8.09E-05 |
| 12 | GO:0030941: chloroplast targeting sequence binding | 8.09E-05 |
| 13 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 8.09E-05 |
| 14 | GO:0004485: methylcrotonoyl-CoA carboxylase activity | 8.09E-05 |
| 15 | GO:0004123: cystathionine gamma-lyase activity | 8.09E-05 |
| 16 | GO:0033201: alpha-1,4-glucan synthase activity | 1.93E-04 |
| 17 | GO:0004046: aminoacylase activity | 1.93E-04 |
| 18 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 1.93E-04 |
| 19 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.93E-04 |
| 20 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 1.93E-04 |
| 21 | GO:0004176: ATP-dependent peptidase activity | 2.94E-04 |
| 22 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 3.24E-04 |
| 23 | GO:0046524: sucrose-phosphate synthase activity | 3.24E-04 |
| 24 | GO:0004373: glycogen (starch) synthase activity | 3.24E-04 |
| 25 | GO:0032947: protein complex scaffold | 3.24E-04 |
| 26 | GO:0004557: alpha-galactosidase activity | 3.24E-04 |
| 27 | GO:0003935: GTP cyclohydrolase II activity | 3.24E-04 |
| 28 | GO:0003962: cystathionine gamma-synthase activity | 3.24E-04 |
| 29 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 3.24E-04 |
| 30 | GO:0004075: biotin carboxylase activity | 3.24E-04 |
| 31 | GO:0000254: C-4 methylsterol oxidase activity | 4.66E-04 |
| 32 | GO:0004792: thiosulfate sulfurtransferase activity | 4.66E-04 |
| 33 | GO:0009882: blue light photoreceptor activity | 4.66E-04 |
| 34 | GO:0048038: quinone binding | 5.92E-04 |
| 35 | GO:0016987: sigma factor activity | 6.21E-04 |
| 36 | GO:0009011: starch synthase activity | 6.21E-04 |
| 37 | GO:0001053: plastid sigma factor activity | 6.21E-04 |
| 38 | GO:0051861: glycolipid binding | 6.21E-04 |
| 39 | GO:0008237: metallopeptidase activity | 7.56E-04 |
| 40 | GO:0004623: phospholipase A2 activity | 7.86E-04 |
| 41 | GO:0004709: MAP kinase kinase kinase activity | 9.59E-04 |
| 42 | GO:0008236: serine-type peptidase activity | 1.04E-03 |
| 43 | GO:0016157: sucrose synthase activity | 1.14E-03 |
| 44 | GO:0004222: metalloendopeptidase activity | 1.19E-03 |
| 45 | GO:0016621: cinnamoyl-CoA reductase activity | 1.34E-03 |
| 46 | GO:0071949: FAD binding | 1.98E-03 |
| 47 | GO:0016844: strictosidine synthase activity | 2.22E-03 |
| 48 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.24E-03 |
| 49 | GO:0031072: heat shock protein binding | 3.24E-03 |
| 50 | GO:0000155: phosphorelay sensor kinase activity | 3.24E-03 |
| 51 | GO:0051082: unfolded protein binding | 3.31E-03 |
| 52 | GO:0051536: iron-sulfur cluster binding | 4.40E-03 |
| 53 | GO:0016491: oxidoreductase activity | 4.59E-03 |
| 54 | GO:0016887: ATPase activity | 4.71E-03 |
| 55 | GO:0047134: protein-disulfide reductase activity | 6.35E-03 |
| 56 | GO:0008080: N-acetyltransferase activity | 7.06E-03 |
| 57 | GO:0010181: FMN binding | 7.42E-03 |
| 58 | GO:0050662: coenzyme binding | 7.42E-03 |
| 59 | GO:0004791: thioredoxin-disulfide reductase activity | 7.42E-03 |
| 60 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.94E-03 |
| 61 | GO:0008233: peptidase activity | 1.07E-02 |
| 62 | GO:0050897: cobalt ion binding | 1.41E-02 |
| 63 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.51E-02 |
| 64 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.60E-02 |
| 65 | GO:0005198: structural molecule activity | 1.96E-02 |
| 66 | GO:0015293: symporter activity | 1.96E-02 |
| 67 | GO:0051287: NAD binding | 2.07E-02 |
| 68 | GO:0004672: protein kinase activity | 2.23E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.23E-02 |
| 70 | GO:0015035: protein disulfide oxidoreductase activity | 2.93E-02 |
| 71 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.43E-02 |
| 72 | GO:0030170: pyridoxal phosphate binding | 3.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.43E-20 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.54E-06 |
| 3 | GO:0042651: thylakoid membrane | 2.67E-04 |
| 4 | GO:0009509: chromoplast | 3.24E-04 |
| 5 | GO:0031359: integral component of chloroplast outer membrane | 1.34E-03 |
| 6 | GO:0009501: amyloplast | 1.54E-03 |
| 7 | GO:0031969: chloroplast membrane | 1.65E-03 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.98E-03 |
| 9 | GO:0005759: mitochondrial matrix | 5.18E-03 |
| 10 | GO:0009707: chloroplast outer membrane | 1.27E-02 |
| 11 | GO:0031977: thylakoid lumen | 1.70E-02 |
| 12 | GO:0009570: chloroplast stroma | 1.70E-02 |
| 13 | GO:0009536: plastid | 1.77E-02 |
| 14 | GO:0005739: mitochondrion | 2.58E-02 |
| 15 | GO:0009706: chloroplast inner membrane | 2.87E-02 |
| 16 | GO:0009941: chloroplast envelope | 3.10E-02 |
| 17 | GO:0010287: plastoglobule | 3.24E-02 |
| 18 | GO:0005773: vacuole | 3.69E-02 |