co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:0070125: mitochondrial translational elongation	0.00E+00
11	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
12	GO:0002184: cytoplasmic translational termination	0.00E+00
13	GO:0010027: thylakoid membrane organization	5.03E-12
14	GO:0032544: plastid translation	3.85E-08
15	GO:0018026: peptidyl-lysine monomethylation	1.93E-06
16	GO:0009658: chloroplast organization	1.94E-06
17	GO:0015979: photosynthesis	6.17E-06
18	GO:0090391: granum assembly	7.09E-06
19	GO:0010021: amylopectin biosynthetic process	3.00E-05
20	GO:0009793: embryo development ending in seed dormancy	6.41E-05
21	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.11E-05
22	GO:0016117: carotenoid biosynthetic process	1.07E-04
23	GO:0010196: nonphotochemical quenching	1.31E-04
24	GO:0006438: valyl-tRNA aminoacylation	2.02E-04
25	GO:0000476: maturation of 4.5S rRNA	2.02E-04
26	GO:0043953: protein transport by the Tat complex	2.02E-04
27	GO:0000967: rRNA 5'-end processing	2.02E-04
28	GO:0000481: maturation of 5S rRNA	2.02E-04
29	GO:0042371: vitamin K biosynthetic process	2.02E-04
30	GO:0065002: intracellular protein transmembrane transport	2.02E-04
31	GO:0043686: co-translational protein modification	2.02E-04
32	GO:0043609: regulation of carbon utilization	2.02E-04
33	GO:0043007: maintenance of rDNA	2.02E-04
34	GO:1902458: positive regulation of stomatal opening	2.02E-04
35	GO:0034337: RNA folding	2.02E-04
36	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.02E-04
37	GO:0006419: alanyl-tRNA aminoacylation	2.02E-04
38	GO:0009657: plastid organization	2.08E-04
39	GO:0042254: ribosome biogenesis	2.15E-04
40	GO:0010206: photosystem II repair	2.53E-04
41	GO:0015995: chlorophyll biosynthetic process	3.73E-04
42	GO:0009773: photosynthetic electron transport in photosystem I	4.10E-04
43	GO:0006415: translational termination	4.10E-04
44	GO:0006432: phenylalanyl-tRNA aminoacylation	4.52E-04
45	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.52E-04
46	GO:0006568: tryptophan metabolic process	4.52E-04
47	GO:0034470: ncRNA processing	4.52E-04
48	GO:0010207: photosystem II assembly	6.01E-04
49	GO:0006000: fructose metabolic process	7.36E-04
50	GO:0005977: glycogen metabolic process	7.36E-04
51	GO:0006412: translation	8.16E-04
52	GO:0006418: tRNA aminoacylation for protein translation	9.08E-04
53	GO:0061077: chaperone-mediated protein folding	9.94E-04
54	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.05E-03
55	GO:2001141: regulation of RNA biosynthetic process	1.05E-03
56	GO:0006020: inositol metabolic process	1.05E-03
57	GO:0006364: rRNA processing	1.15E-03
58	GO:0006109: regulation of carbohydrate metabolic process	1.40E-03
59	GO:0045727: positive regulation of translation	1.40E-03
60	GO:0015994: chlorophyll metabolic process	1.40E-03
61	GO:0006546: glycine catabolic process	1.40E-03
62	GO:0006021: inositol biosynthetic process	1.40E-03
63	GO:0006808: regulation of nitrogen utilization	1.40E-03
64	GO:0016120: carotene biosynthetic process	1.78E-03
65	GO:0032543: mitochondrial translation	1.78E-03
66	GO:0010236: plastoquinone biosynthetic process	1.78E-03
67	GO:0045038: protein import into chloroplast thylakoid membrane	1.78E-03
68	GO:0031365: N-terminal protein amino acid modification	1.78E-03
69	GO:0016123: xanthophyll biosynthetic process	1.78E-03
70	GO:0019252: starch biosynthetic process	1.85E-03
71	GO:0042793: transcription from plastid promoter	2.19E-03
72	GO:0046855: inositol phosphate dephosphorylation	2.19E-03
73	GO:0010190: cytochrome b6f complex assembly	2.19E-03
74	GO:0042549: photosystem II stabilization	2.19E-03
75	GO:0055114: oxidation-reduction process	2.53E-03
76	GO:0042372: phylloquinone biosynthetic process	2.63E-03
77	GO:1901259: chloroplast rRNA processing	2.63E-03
78	GO:0030488: tRNA methylation	2.63E-03
79	GO:0006400: tRNA modification	3.09E-03
80	GO:0009772: photosynthetic electron transport in photosystem II	3.09E-03
81	GO:0005978: glycogen biosynthetic process	3.59E-03
82	GO:0009642: response to light intensity	3.59E-03
83	GO:0032508: DNA duplex unwinding	3.59E-03
84	GO:2000070: regulation of response to water deprivation	3.59E-03
85	GO:0000105: histidine biosynthetic process	3.59E-03
86	GO:0009231: riboflavin biosynthetic process	3.59E-03
87	GO:0016559: peroxisome fission	3.59E-03
88	GO:0018298: protein-chromophore linkage	3.71E-03
89	GO:0015996: chlorophyll catabolic process	4.10E-03
90	GO:0007186: G-protein coupled receptor signaling pathway	4.10E-03
91	GO:0017004: cytochrome complex assembly	4.10E-03
92	GO:0006002: fructose 6-phosphate metabolic process	4.10E-03
93	GO:0071482: cellular response to light stimulus	4.10E-03
94	GO:0009637: response to blue light	4.69E-03
95	GO:0006779: porphyrin-containing compound biosynthetic process	5.21E-03
96	GO:0005982: starch metabolic process	5.21E-03
97	GO:0006782: protoporphyrinogen IX biosynthetic process	5.80E-03
98	GO:0010114: response to red light	6.04E-03
99	GO:0019684: photosynthesis, light reaction	6.41E-03
100	GO:0009089: lysine biosynthetic process via diaminopimelate	6.41E-03
101	GO:0072593: reactive oxygen species metabolic process	6.41E-03
102	GO:0009073: aromatic amino acid family biosynthetic process	6.41E-03
103	GO:0043085: positive regulation of catalytic activity	6.41E-03
104	GO:0006352: DNA-templated transcription, initiation	6.41E-03
105	GO:0000272: polysaccharide catabolic process	6.41E-03
106	GO:0018119: peptidyl-cysteine S-nitrosylation	6.41E-03
107	GO:0005983: starch catabolic process	7.04E-03
108	GO:0045037: protein import into chloroplast stroma	7.04E-03
109	GO:0006790: sulfur compound metabolic process	7.04E-03
110	GO:0006006: glucose metabolic process	7.70E-03
111	GO:0010020: chloroplast fission	8.37E-03
112	GO:0019253: reductive pentose-phosphate cycle	8.37E-03
113	GO:0009266: response to temperature stimulus	8.37E-03
114	GO:0046854: phosphatidylinositol phosphorylation	9.07E-03
115	GO:0006096: glycolytic process	9.63E-03
116	GO:0000162: tryptophan biosynthetic process	9.79E-03
117	GO:0006636: unsaturated fatty acid biosynthetic process	9.79E-03
118	GO:0008299: isoprenoid biosynthetic process	1.13E-02
119	GO:0009768: photosynthesis, light harvesting in photosystem I	1.13E-02
120	GO:0006396: RNA processing	1.20E-02
121	GO:0048278: vesicle docking	1.21E-02
122	GO:0071369: cellular response to ethylene stimulus	1.37E-02
123	GO:0009561: megagametogenesis	1.45E-02
124	GO:0042631: cellular response to water deprivation	1.62E-02
125	GO:0009790: embryo development	1.70E-02
126	GO:0006662: glycerol ether metabolic process	1.71E-02
127	GO:0010182: sugar mediated signaling pathway	1.71E-02
128	GO:0061025: membrane fusion	1.80E-02
129	GO:0055072: iron ion homeostasis	1.89E-02
130	GO:0071554: cell wall organization or biogenesis	1.99E-02
131	GO:0002229: defense response to oomycetes	1.99E-02
132	GO:0007623: circadian rhythm	2.01E-02
133	GO:0010583: response to cyclopentenone	2.08E-02
134	GO:0009567: double fertilization forming a zygote and endosperm	2.28E-02
135	GO:0009735: response to cytokinin	2.48E-02
136	GO:0006906: vesicle fusion	2.80E-02
137	GO:0016311: dephosphorylation	3.01E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.12E-02
139	GO:0006499: N-terminal protein myristoylation	3.35E-02
140	GO:0010218: response to far red light	3.35E-02
141	GO:0006810: transport	3.61E-02
142	GO:0009867: jasmonic acid mediated signaling pathway	3.69E-02
143	GO:0034599: cellular response to oxidative stress	3.81E-02
144	GO:0030001: metal ion transport	4.05E-02
145	GO:0006887: exocytosis	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
9	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
10	GO:0004823: leucine-tRNA ligase activity	0.00E+00
11	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
12	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
13	GO:0019843: rRNA binding	1.36E-07
14	GO:0005528: FK506 binding	1.14E-06
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.19E-06
16	GO:0016149: translation release factor activity, codon specific	1.63E-05
17	GO:0016279: protein-lysine N-methyltransferase activity	3.00E-05
18	GO:2001070: starch binding	7.11E-05
19	GO:0050308: sugar-phosphatase activity	2.02E-04
20	GO:0004813: alanine-tRNA ligase activity	2.02E-04
21	GO:0042586: peptide deformylase activity	2.02E-04
22	GO:0019203: carbohydrate phosphatase activity	2.02E-04
23	GO:0004832: valine-tRNA ligase activity	2.02E-04
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.02E-04
25	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.02E-04
26	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.02E-04
27	GO:0003747: translation release factor activity	2.53E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	4.52E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	4.52E-04
30	GO:0004826: phenylalanine-tRNA ligase activity	4.52E-04
31	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.52E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.52E-04
33	GO:0019156: isoamylase activity	4.52E-04
34	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.52E-04
35	GO:0010291: carotene beta-ring hydroxylase activity	4.52E-04
36	GO:0047746: chlorophyllase activity	4.52E-04
37	GO:0042389: omega-3 fatty acid desaturase activity	4.52E-04
38	GO:0010297: heteropolysaccharide binding	4.52E-04
39	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.52E-04
40	GO:0004047: aminomethyltransferase activity	4.52E-04
41	GO:0052832: inositol monophosphate 3-phosphatase activity	4.52E-04
42	GO:0000049: tRNA binding	4.70E-04
43	GO:0031072: heat shock protein binding	5.33E-04
44	GO:0043169: cation binding	7.36E-04
45	GO:0017150: tRNA dihydrouridine synthase activity	7.36E-04
46	GO:0003913: DNA photolyase activity	7.36E-04
47	GO:0002161: aminoacyl-tRNA editing activity	7.36E-04
48	GO:0070402: NADPH binding	7.36E-04
49	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.36E-04
50	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.05E-03
51	GO:0016851: magnesium chelatase activity	1.05E-03
52	GO:0043023: ribosomal large subunit binding	1.05E-03
53	GO:0004812: aminoacyl-tRNA ligase activity	1.38E-03
54	GO:0016987: sigma factor activity	1.40E-03
55	GO:0004659: prenyltransferase activity	1.40E-03
56	GO:0001053: plastid sigma factor activity	1.40E-03
57	GO:0003735: structural constituent of ribosome	2.03E-03
58	GO:0004556: alpha-amylase activity	2.19E-03
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.46E-03
60	GO:0003723: RNA binding	2.48E-03
61	GO:0008483: transaminase activity	2.54E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.63E-03
63	GO:0016491: oxidoreductase activity	2.86E-03
64	GO:0009881: photoreceptor activity	3.09E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	3.59E-03
66	GO:0043022: ribosome binding	3.59E-03
67	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.10E-03
68	GO:0008173: RNA methyltransferase activity	4.10E-03
69	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.65E-03
70	GO:0008047: enzyme activator activity	5.80E-03
71	GO:0016787: hydrolase activity	7.42E-03
72	GO:0031409: pigment binding	9.79E-03
73	GO:0004857: enzyme inhibitor activity	1.05E-02
74	GO:0051082: unfolded protein binding	1.16E-02
75	GO:0003756: protein disulfide isomerase activity	1.45E-02
76	GO:0047134: protein-disulfide reductase activity	1.54E-02
77	GO:0050662: coenzyme binding	1.80E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	1.80E-02
79	GO:0016853: isomerase activity	1.80E-02
80	GO:0008017: microtubule binding	2.11E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.18E-02
82	GO:0016597: amino acid binding	2.48E-02
83	GO:0016413: O-acetyltransferase activity	2.48E-02
84	GO:0042802: identical protein binding	2.56E-02
85	GO:0016168: chlorophyll binding	2.69E-02
86	GO:0008168: methyltransferase activity	3.00E-02
87	GO:0008236: serine-type peptidase activity	3.01E-02
88	GO:0000287: magnesium ion binding	3.06E-02
89	GO:0030145: manganese ion binding	3.46E-02
90	GO:0003729: mRNA binding	3.68E-02
91	GO:0003746: translation elongation factor activity	3.69E-02
92	GO:0003993: acid phosphatase activity	3.81E-02
93	GO:0000149: SNARE binding	3.93E-02
94	GO:0050661: NADP binding	4.05E-02
95	GO:0005484: SNAP receptor activity	4.42E-02
96	GO:0051537: 2 iron, 2 sulfur cluster binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	1.37E-80
6	GO:0009570: chloroplast stroma	9.41E-42
7	GO:0009535: chloroplast thylakoid membrane	6.88E-27
8	GO:0009941: chloroplast envelope	1.28E-23
9	GO:0009534: chloroplast thylakoid	8.35E-23
10	GO:0009579: thylakoid	7.17E-16
11	GO:0009543: chloroplast thylakoid lumen	4.06E-15
12	GO:0031977: thylakoid lumen	4.02E-09
13	GO:0005840: ribosome	2.99E-07
14	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.93E-06
15	GO:0009654: photosystem II oxygen evolving complex	5.45E-05
16	GO:0019898: extrinsic component of membrane	1.64E-04
17	GO:0031361: integral component of thylakoid membrane	2.02E-04
18	GO:0031969: chloroplast membrane	3.13E-04
19	GO:0009508: plastid chromosome	5.33E-04
20	GO:0030095: chloroplast photosystem II	6.01E-04
21	GO:0009528: plastid inner membrane	7.36E-04
22	GO:0010007: magnesium chelatase complex	7.36E-04
23	GO:0009509: chromoplast	7.36E-04
24	GO:0033281: TAT protein transport complex	7.36E-04
25	GO:0042646: plastid nucleoid	1.05E-03
26	GO:0009527: plastid outer membrane	1.40E-03
27	GO:0010287: plastoglobule	2.22E-03
28	GO:0009536: plastid	2.48E-03
29	GO:0009295: nucleoid	2.54E-03
30	GO:0010319: stromule	2.54E-03
31	GO:0009501: amyloplast	3.59E-03
32	GO:0009707: chloroplast outer membrane	3.71E-03
33	GO:0042644: chloroplast nucleoid	4.65E-03
34	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.65E-03
35	GO:0055028: cortical microtubule	5.80E-03
36	GO:0032040: small-subunit processome	7.04E-03
37	GO:0030076: light-harvesting complex	9.07E-03
38	GO:0015935: small ribosomal subunit	1.21E-02
39	GO:0009532: plastid stroma	1.21E-02
40	GO:0009522: photosystem I	1.80E-02
41	GO:0005759: mitochondrial matrix	1.83E-02
42	GO:0009504: cell plate	1.89E-02
43	GO:0022626: cytosolic ribosome	2.62E-02
44	GO:0015934: large ribosomal subunit	3.46E-02
45	GO:0031201: SNARE complex	4.18E-02