co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0046890: regulation of lipid biosynthetic process	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0009992: cellular water homeostasis	0.00E+00
5	GO:0010513: positive regulation of phosphatidylinositol biosynthetic process	0.00E+00
6	GO:0010265: SCF complex assembly	1.30E-04
7	GO:2000028: regulation of photoperiodism, flowering	2.89E-04
8	GO:0006432: phenylalanyl-tRNA aminoacylation	2.99E-04
9	GO:0001736: establishment of planar polarity	2.99E-04
10	GO:0071712: ER-associated misfolded protein catabolic process	2.99E-04
11	GO:0055088: lipid homeostasis	2.99E-04
12	GO:0016560: protein import into peroxisome matrix, docking	2.99E-04
13	GO:0009926: auxin polar transport	3.62E-04
14	GO:0046417: chorismate metabolic process	4.92E-04
15	GO:0045793: positive regulation of cell size	4.92E-04
16	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	4.92E-04
17	GO:0071494: cellular response to UV-C	4.92E-04
18	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.92E-04
19	GO:0046168: glycerol-3-phosphate catabolic process	4.92E-04
20	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.92E-04
21	GO:1902290: positive regulation of defense response to oomycetes	7.04E-04
22	GO:0006882: cellular zinc ion homeostasis	7.04E-04
23	GO:0032877: positive regulation of DNA endoreduplication	7.04E-04
24	GO:0051259: protein oligomerization	7.04E-04
25	GO:0009311: oligosaccharide metabolic process	7.04E-04
26	GO:0006107: oxaloacetate metabolic process	7.04E-04
27	GO:0006072: glycerol-3-phosphate metabolic process	7.04E-04
28	GO:0090307: mitotic spindle assembly	7.04E-04
29	GO:0035067: negative regulation of histone acetylation	7.04E-04
30	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	7.04E-04
31	GO:0010587: miRNA catabolic process	7.04E-04
32	GO:0016569: covalent chromatin modification	7.67E-04
33	GO:0031507: heterochromatin assembly	9.34E-04
34	GO:0044205: 'de novo' UMP biosynthetic process	9.34E-04
35	GO:0051781: positive regulation of cell division	9.34E-04
36	GO:0006221: pyrimidine nucleotide biosynthetic process	9.34E-04
37	GO:0006625: protein targeting to peroxisome	9.34E-04
38	GO:0007020: microtubule nucleation	9.34E-04
39	GO:0006749: glutathione metabolic process	9.34E-04
40	GO:0009751: response to salicylic acid	1.13E-03
41	GO:2000762: regulation of phenylpropanoid metabolic process	1.18E-03
42	GO:0036065: fucosylation	1.18E-03
43	GO:0010286: heat acclimation	1.38E-03
44	GO:0006014: D-ribose metabolic process	1.45E-03
45	GO:0006751: glutathione catabolic process	1.45E-03
46	GO:0051568: histone H3-K4 methylation	1.45E-03
47	GO:0034314: Arp2/3 complex-mediated actin nucleation	1.45E-03
48	GO:0009627: systemic acquired resistance	1.72E-03
49	GO:0009099: valine biosynthetic process	1.73E-03
50	GO:0010555: response to mannitol	1.73E-03
51	GO:2000067: regulation of root morphogenesis	1.73E-03
52	GO:0009612: response to mechanical stimulus	1.73E-03
53	GO:0071446: cellular response to salicylic acid stimulus	2.04E-03
54	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.04E-03
55	GO:0009850: auxin metabolic process	2.36E-03
56	GO:0050821: protein stabilization	2.36E-03
57	GO:1900150: regulation of defense response to fungus	2.36E-03
58	GO:0009097: isoleucine biosynthetic process	2.69E-03
59	GO:0006526: arginine biosynthetic process	2.69E-03
60	GO:0009826: unidimensional cell growth	2.69E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	2.69E-03
62	GO:0071577: zinc II ion transmembrane transport	3.41E-03
63	GO:0009098: leucine biosynthetic process	3.41E-03
64	GO:0006349: regulation of gene expression by genetic imprinting	3.41E-03
65	GO:0045036: protein targeting to chloroplast	3.79E-03
66	GO:0010048: vernalization response	3.79E-03
67	GO:0006325: chromatin organization	3.79E-03
68	GO:0072593: reactive oxygen species metabolic process	4.18E-03
69	GO:0009073: aromatic amino acid family biosynthetic process	4.18E-03
70	GO:0009750: response to fructose	4.18E-03
71	GO:0048765: root hair cell differentiation	4.18E-03
72	GO:0009698: phenylpropanoid metabolic process	4.18E-03
73	GO:0052544: defense response by callose deposition in cell wall	4.18E-03
74	GO:0051603: proteolysis involved in cellular protein catabolic process	4.53E-03
75	GO:0045454: cell redox homeostasis	4.66E-03
76	GO:0006108: malate metabolic process	5.00E-03
77	GO:0009725: response to hormone	5.00E-03
78	GO:0006807: nitrogen compound metabolic process	5.00E-03
79	GO:0007015: actin filament organization	5.44E-03
80	GO:0002237: response to molecule of bacterial origin	5.44E-03
81	GO:0009969: xyloglucan biosynthetic process	5.88E-03
82	GO:0007031: peroxisome organization	5.88E-03
83	GO:0006071: glycerol metabolic process	6.34E-03
84	GO:0034976: response to endoplasmic reticulum stress	6.34E-03
85	GO:0006289: nucleotide-excision repair	6.81E-03
86	GO:0009863: salicylic acid mediated signaling pathway	6.81E-03
87	GO:0016575: histone deacetylation	7.30E-03
88	GO:0006874: cellular calcium ion homeostasis	7.30E-03
89	GO:0043622: cortical microtubule organization	7.30E-03
90	GO:0031348: negative regulation of defense response	8.30E-03
91	GO:0080092: regulation of pollen tube growth	8.30E-03
92	GO:0016226: iron-sulfur cluster assembly	8.30E-03
93	GO:0040007: growth	8.82E-03
94	GO:0001944: vasculature development	8.82E-03
95	GO:0006012: galactose metabolic process	8.82E-03
96	GO:0006284: base-excision repair	9.35E-03
97	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.90E-03
98	GO:0010051: xylem and phloem pattern formation	1.04E-02
99	GO:0007623: circadian rhythm	1.08E-02
100	GO:0010182: sugar mediated signaling pathway	1.10E-02
101	GO:0006342: chromatin silencing	1.10E-02
102	GO:0009960: endosperm development	1.10E-02
103	GO:0009749: response to glucose	1.22E-02
104	GO:0009791: post-embryonic development	1.22E-02
105	GO:0007166: cell surface receptor signaling pathway	1.23E-02
106	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.28E-02
107	GO:0071281: cellular response to iron ion	1.40E-02
108	GO:0010090: trichome morphogenesis	1.40E-02
109	GO:0000910: cytokinesis	1.59E-02
110	GO:0009615: response to virus	1.66E-02
111	GO:0006974: cellular response to DNA damage stimulus	1.79E-02
112	GO:0008219: cell death	2.00E-02
113	GO:0006351: transcription, DNA-templated	2.02E-02
114	GO:0009832: plant-type cell wall biogenesis	2.07E-02
115	GO:0006499: N-terminal protein myristoylation	2.15E-02
116	GO:0009407: toxin catabolic process	2.15E-02
117	GO:0010119: regulation of stomatal movement	2.22E-02
118	GO:0044550: secondary metabolite biosynthetic process	2.25E-02
119	GO:0045087: innate immune response	2.37E-02
120	GO:0030001: metal ion transport	2.60E-02
121	GO:0009744: response to sucrose	2.84E-02
122	GO:0032259: methylation	2.93E-02
123	GO:0009408: response to heat	3.06E-02
124	GO:0006281: DNA repair	3.06E-02
125	GO:0006629: lipid metabolic process	3.06E-02
126	GO:0009636: response to toxic substance	3.08E-02
127	GO:0009965: leaf morphogenesis	3.08E-02
128	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.25E-02
129	GO:0006355: regulation of transcription, DNA-templated	3.36E-02
130	GO:0009736: cytokinin-activated signaling pathway	3.51E-02
131	GO:0006364: rRNA processing	3.51E-02
132	GO:0006486: protein glycosylation	3.51E-02
133	GO:0010224: response to UV-B	3.60E-02
134	GO:0009620: response to fungus	4.23E-02
135	GO:0006508: proteolysis	4.24E-02
136	GO:0009624: response to nematode	4.51E-02
137	GO:0018105: peptidyl-serine phosphorylation	4.60E-02
138	GO:0051726: regulation of cell cycle	4.70E-02
139	GO:0009908: flower development	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
3	GO:0050152: omega-amidase activity	0.00E+00
4	GO:0004151: dihydroorotase activity	0.00E+00
5	GO:0035064: methylated histone binding	8.48E-05
6	GO:0008237: metallopeptidase activity	1.08E-04
7	GO:0016817: hydrolase activity, acting on acid anhydrides	1.30E-04
8	GO:0010179: IAA-Ala conjugate hydrolase activity	1.30E-04
9	GO:0030544: Hsp70 protein binding	1.30E-04
10	GO:0044390: ubiquitin-like protein conjugating enzyme binding	2.99E-04
11	GO:0004826: phenylalanine-tRNA ligase activity	2.99E-04
12	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.99E-04
13	GO:0004534: 5'-3' exoribonuclease activity	2.99E-04
14	GO:0004106: chorismate mutase activity	2.99E-04
15	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	4.92E-04
16	GO:0052692: raffinose alpha-galactosidase activity	4.92E-04
17	GO:0001664: G-protein coupled receptor binding	4.92E-04
18	GO:0004557: alpha-galactosidase activity	4.92E-04
19	GO:0031683: G-protein beta/gamma-subunit complex binding	4.92E-04
20	GO:0010178: IAA-amino acid conjugate hydrolase activity	7.04E-04
21	GO:0052656: L-isoleucine transaminase activity	7.04E-04
22	GO:0052654: L-leucine transaminase activity	7.04E-04
23	GO:0052655: L-valine transaminase activity	7.04E-04
24	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	9.34E-04
25	GO:0010011: auxin binding	9.34E-04
26	GO:0008409: 5'-3' exonuclease activity	9.34E-04
27	GO:0043015: gamma-tubulin binding	9.34E-04
28	GO:0004084: branched-chain-amino-acid transaminase activity	9.34E-04
29	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	9.34E-04
30	GO:0051011: microtubule minus-end binding	1.18E-03
31	GO:0004040: amidase activity	1.18E-03
32	GO:0004888: transmembrane signaling receptor activity	1.18E-03
33	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.73E-03
34	GO:0015631: tubulin binding	1.73E-03
35	GO:0004747: ribokinase activity	1.73E-03
36	GO:0030247: polysaccharide binding	1.81E-03
37	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.04E-03
38	GO:0042162: telomeric DNA binding	2.04E-03
39	GO:0004034: aldose 1-epimerase activity	2.36E-03
40	GO:0008417: fucosyltransferase activity	3.04E-03
41	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.04E-03
42	GO:0008047: enzyme activator activity	3.79E-03
43	GO:0008559: xenobiotic-transporting ATPase activity	4.18E-03
44	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.18E-03
45	GO:0000976: transcription regulatory region sequence-specific DNA binding	4.58E-03
46	GO:0004521: endoribonuclease activity	4.58E-03
47	GO:0000049: tRNA binding	4.58E-03
48	GO:0008131: primary amine oxidase activity	5.44E-03
49	GO:0004970: ionotropic glutamate receptor activity	5.88E-03
50	GO:0005217: intracellular ligand-gated ion channel activity	5.88E-03
51	GO:0005385: zinc ion transmembrane transporter activity	6.81E-03
52	GO:0003714: transcription corepressor activity	6.81E-03
53	GO:0004298: threonine-type endopeptidase activity	7.79E-03
54	GO:0003727: single-stranded RNA binding	9.35E-03
55	GO:0003756: protein disulfide isomerase activity	9.35E-03
56	GO:0005102: receptor binding	9.90E-03
57	GO:0018024: histone-lysine N-methyltransferase activity	9.90E-03
58	GO:0046873: metal ion transmembrane transporter activity	1.10E-02
59	GO:0004872: receptor activity	1.22E-02
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.40E-02
61	GO:0051015: actin filament binding	1.40E-02
62	GO:0005200: structural constituent of cytoskeleton	1.53E-02
63	GO:0008168: methyltransferase activity	1.61E-02
64	GO:0008375: acetylglucosaminyltransferase activity	1.79E-02
65	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.79E-02
66	GO:0030246: carbohydrate binding	1.83E-02
67	GO:0004683: calmodulin-dependent protein kinase activity	1.86E-02
68	GO:0008233: peptidase activity	2.04E-02
69	GO:0008270: zinc ion binding	2.37E-02
70	GO:0003746: translation elongation factor activity	2.37E-02
71	GO:0003697: single-stranded DNA binding	2.37E-02
72	GO:0003993: acid phosphatase activity	2.45E-02
73	GO:0042393: histone binding	2.60E-02
74	GO:0051539: 4 iron, 4 sulfur cluster binding	2.60E-02
75	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.68E-02
76	GO:0046872: metal ion binding	2.72E-02
77	GO:0004364: glutathione transferase activity	2.76E-02
78	GO:0005509: calcium ion binding	2.77E-02
79	GO:0004185: serine-type carboxypeptidase activity	2.84E-02
80	GO:0051537: 2 iron, 2 sulfur cluster binding	3.00E-02
81	GO:0051287: NAD binding	3.25E-02
82	GO:0008234: cysteine-type peptidase activity	3.77E-02
83	GO:0005515: protein binding	4.11E-02
84	GO:0015035: protein disulfide oxidoreductase activity	4.60E-02
85	GO:0008026: ATP-dependent helicase activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005675: holo TFIIH complex	0.00E+00
2	GO:0005677: chromatin silencing complex	1.07E-04
3	GO:1990429: peroxisomal importomer complex	1.30E-04
4	GO:0005697: telomerase holoenzyme complex	2.99E-04
5	GO:0031519: PcG protein complex	4.92E-04
6	GO:0000439: core TFIIH complex	4.92E-04
7	GO:0036513: Derlin-1 retrotranslocation complex	7.04E-04
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	7.04E-04
9	GO:0000923: equatorial microtubule organizing center	7.04E-04
10	GO:0000930: gamma-tubulin complex	9.34E-04
11	GO:0005815: microtubule organizing center	9.34E-04
12	GO:0005788: endoplasmic reticulum lumen	1.63E-03
13	GO:0005885: Arp2/3 protein complex	1.73E-03
14	GO:0005801: cis-Golgi network	1.73E-03
15	GO:0000922: spindle pole	3.04E-03
16	GO:0045298: tubulin complex	3.04E-03
17	GO:0009508: plastid chromosome	5.00E-03
18	GO:0005839: proteasome core complex	7.79E-03
19	GO:0005783: endoplasmic reticulum	7.81E-03
20	GO:0005829: cytosol	1.14E-02
21	GO:0000785: chromatin	1.34E-02
22	GO:0032580: Golgi cisterna membrane	1.46E-02
23	GO:0005778: peroxisomal membrane	1.53E-02
24	GO:0009295: nucleoid	1.53E-02
25	GO:0005774: vacuolar membrane	1.72E-02
26	GO:0009707: chloroplast outer membrane	2.00E-02
27	GO:0015934: large ribosomal subunit	2.22E-02
28	GO:0000325: plant-type vacuole	2.22E-02
29	GO:0005819: spindle	2.52E-02
30	GO:0009506: plasmodesma	2.97E-02
31	GO:0000502: proteasome complex	3.51E-02
32	GO:0016021: integral component of membrane	3.74E-02
33	GO:0009505: plant-type cell wall	4.04E-02
34	GO:0005834: heterotrimeric G-protein complex	4.14E-02
35	GO:0005732: small nucleolar ribonucleoprotein complex	4.80E-02