co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:0009106: lipoate metabolic process	0.00E+00
3	GO:0051246: regulation of protein metabolic process	0.00E+00
4	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
5	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
6	GO:0006907: pinocytosis	0.00E+00
7	GO:0009249: protein lipoylation	0.00E+00
8	GO:0016123: xanthophyll biosynthetic process	9.51E-08
9	GO:0016120: carotene biosynthetic process	2.06E-05
10	GO:0009657: plastid organization	9.69E-05
11	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.22E-04
12	GO:0071806: protein transmembrane transport	1.22E-04
13	GO:0042371: vitamin K biosynthetic process	1.22E-04
14	GO:0071454: cellular response to anoxia	1.22E-04
15	GO:0043686: co-translational protein modification	1.22E-04
16	GO:0045037: protein import into chloroplast stroma	2.32E-04
17	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.82E-04
18	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.82E-04
19	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.82E-04
20	GO:0009658: chloroplast organization	4.04E-04
21	GO:0001578: microtubule bundle formation	4.65E-04
22	GO:0090307: mitotic spindle assembly	6.66E-04
23	GO:0006809: nitric oxide biosynthetic process	6.66E-04
24	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	6.66E-04
25	GO:0033014: tetrapyrrole biosynthetic process	6.66E-04
26	GO:0008033: tRNA processing	7.61E-04
27	GO:0006221: pyrimidine nucleotide biosynthetic process	8.84E-04
28	GO:0007020: microtubule nucleation	8.84E-04
29	GO:0031122: cytoplasmic microtubule organization	8.84E-04
30	GO:0042274: ribosomal small subunit biogenesis	8.84E-04
31	GO:0051322: anaphase	8.84E-04
32	GO:0031935: regulation of chromatin silencing	8.84E-04
33	GO:0009765: photosynthesis, light harvesting	8.84E-04
34	GO:0046785: microtubule polymerization	1.12E-03
35	GO:0031365: N-terminal protein amino acid modification	1.12E-03
36	GO:0009107: lipoate biosynthetic process	1.12E-03
37	GO:0000910: cytokinesis	1.35E-03
38	GO:0016126: sterol biosynthetic process	1.42E-03
39	GO:1900056: negative regulation of leaf senescence	1.92E-03
40	GO:0010196: nonphotochemical quenching	1.92E-03
41	GO:0080111: DNA demethylation	1.92E-03
42	GO:0006401: RNA catabolic process	1.92E-03
43	GO:0048528: post-embryonic root development	1.92E-03
44	GO:0042255: ribosome assembly	2.22E-03
45	GO:0006353: DNA-templated transcription, termination	2.22E-03
46	GO:0006402: mRNA catabolic process	2.22E-03
47	GO:0006605: protein targeting	2.22E-03
48	GO:0032544: plastid translation	2.54E-03
49	GO:0022900: electron transport chain	2.54E-03
50	GO:0009245: lipid A biosynthetic process	2.87E-03
51	GO:0006783: heme biosynthetic process	2.87E-03
52	GO:0000373: Group II intron splicing	2.87E-03
53	GO:0009744: response to sucrose	2.99E-03
54	GO:0006779: porphyrin-containing compound biosynthetic process	3.21E-03
55	GO:0010380: regulation of chlorophyll biosynthetic process	3.21E-03
56	GO:0031425: chloroplast RNA processing	3.21E-03
57	GO:0045036: protein targeting to chloroplast	3.57E-03
58	GO:0006364: rRNA processing	4.02E-03
59	GO:0009725: response to hormone	4.71E-03
60	GO:0009767: photosynthetic electron transport chain	4.71E-03
61	GO:0034605: cellular response to heat	5.12E-03
62	GO:0019253: reductive pentose-phosphate cycle	5.12E-03
63	GO:0010207: photosystem II assembly	5.12E-03
64	GO:0090351: seedling development	5.54E-03
65	GO:0006863: purine nucleobase transport	5.98E-03
66	GO:0006289: nucleotide-excision repair	6.42E-03
67	GO:0043622: cortical microtubule organization	6.87E-03
68	GO:0007017: microtubule-based process	6.87E-03
69	GO:0009793: embryo development ending in seed dormancy	7.38E-03
70	GO:0070417: cellular response to cold	9.31E-03
71	GO:0016117: carotenoid biosynthetic process	9.31E-03
72	GO:0009451: RNA modification	1.01E-02
73	GO:0009958: positive gravitropism	1.04E-02
74	GO:0006662: glycerol ether metabolic process	1.04E-02
75	GO:0009791: post-embryonic development	1.15E-02
76	GO:0010193: response to ozone	1.20E-02
77	GO:0016032: viral process	1.26E-02
78	GO:0032502: developmental process	1.26E-02
79	GO:0010027: thylakoid membrane organization	1.56E-02
80	GO:0009816: defense response to bacterium, incompatible interaction	1.62E-02
81	GO:0015995: chlorophyll biosynthetic process	1.75E-02
82	GO:0006811: ion transport	2.02E-02
83	GO:0007568: aging	2.09E-02
84	GO:0009910: negative regulation of flower development	2.09E-02
85	GO:0034599: cellular response to oxidative stress	2.30E-02
86	GO:0008283: cell proliferation	2.67E-02
87	GO:0006260: DNA replication	3.06E-02
88	GO:0042538: hyperosmotic salinity response	3.14E-02
89	GO:0051603: proteolysis involved in cellular protein catabolic process	3.38E-02
90	GO:0006810: transport	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
5	GO:0004325: ferrochelatase activity	1.22E-04
6	GO:0042586: peptide deformylase activity	1.22E-04
7	GO:0030941: chloroplast targeting sequence binding	1.22E-04
8	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.22E-04
9	GO:0017118: lipoyltransferase activity	2.82E-04
10	GO:0016415: octanoyltransferase activity	2.82E-04
11	GO:0000254: C-4 methylsterol oxidase activity	6.66E-04
12	GO:0009041: uridylate kinase activity	6.66E-04
13	GO:0016851: magnesium chelatase activity	6.66E-04
14	GO:0043015: gamma-tubulin binding	8.84E-04
15	GO:0051861: glycolipid binding	8.84E-04
16	GO:0019843: rRNA binding	9.79E-04
17	GO:0051011: microtubule minus-end binding	1.12E-03
18	GO:0031177: phosphopantetheine binding	1.37E-03
19	GO:0015631: tubulin binding	1.64E-03
20	GO:0000035: acyl binding	1.64E-03
21	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.22E-03
22	GO:0003690: double-stranded DNA binding	4.16E-03
23	GO:0000175: 3'-5'-exoribonuclease activity	4.71E-03
24	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.12E-03
25	GO:0003887: DNA-directed DNA polymerase activity	5.98E-03
26	GO:0005345: purine nucleobase transmembrane transporter activity	6.87E-03
27	GO:0003674: molecular_function	7.73E-03
28	GO:0003723: RNA binding	8.20E-03
29	GO:0008565: protein transporter activity	8.54E-03
30	GO:0003727: single-stranded RNA binding	8.80E-03
31	GO:0047134: protein-disulfide reductase activity	9.31E-03
32	GO:0004791: thioredoxin-disulfide reductase activity	1.09E-02
33	GO:0004872: receptor activity	1.15E-02
34	GO:0048038: quinone binding	1.20E-02
35	GO:0004518: nuclease activity	1.26E-02
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.32E-02
37	GO:0005200: structural constituent of cytoskeleton	1.44E-02
38	GO:0016740: transferase activity	1.45E-02
39	GO:0003746: translation elongation factor activity	2.23E-02
40	GO:0004185: serine-type carboxypeptidase activity	2.67E-02
41	GO:0003924: GTPase activity	2.81E-02
42	GO:0051537: 2 iron, 2 sulfur cluster binding	2.82E-02
43	GO:0004519: endonuclease activity	3.05E-02
44	GO:0003777: microtubule motor activity	3.55E-02
45	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.80E-02
46	GO:0016491: oxidoreductase activity	3.86E-02
47	GO:0015035: protein disulfide oxidoreductase activity	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.88E-21
2	GO:0009535: chloroplast thylakoid membrane	3.41E-08
3	GO:0009706: chloroplast inner membrane	7.55E-05
4	GO:0009295: nucleoid	9.50E-05
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.20E-04
6	GO:0009508: plastid chromosome	2.65E-04
7	GO:0008274: gamma-tubulin ring complex	2.82E-04
8	GO:0009528: plastid inner membrane	4.65E-04
9	GO:0000923: equatorial microtubule organizing center	6.66E-04
10	GO:0009941: chloroplast envelope	8.64E-04
11	GO:0030286: dynein complex	8.84E-04
12	GO:0072686: mitotic spindle	1.12E-03
13	GO:0055035: plastid thylakoid membrane	1.12E-03
14	GO:0010005: cortical microtubule, transverse to long axis	1.64E-03
15	GO:0009840: chloroplastic endopeptidase Clp complex	1.64E-03
16	GO:0009707: chloroplast outer membrane	1.84E-03
17	GO:0009570: chloroplast stroma	1.91E-03
18	GO:0000123: histone acetyltransferase complex	1.92E-03
19	GO:0031359: integral component of chloroplast outer membrane	1.92E-03
20	GO:0009536: plastid	2.43E-03
21	GO:0046930: pore complex	2.54E-03
22	GO:0000922: spindle pole	2.87E-03
23	GO:0055028: cortical microtubule	3.57E-03
24	GO:0005938: cell cortex	4.71E-03
25	GO:0009574: preprophase band	4.71E-03
26	GO:0043234: protein complex	5.98E-03
27	GO:0005875: microtubule associated complex	5.98E-03
28	GO:0042651: thylakoid membrane	6.87E-03
29	GO:0005623: cell	7.33E-03
30	GO:0015935: small ribosomal subunit	7.34E-03
31	GO:0005874: microtubule	1.83E-02
32	GO:0031969: chloroplast membrane	1.90E-02
33	GO:0005819: spindle	2.37E-02
34	GO:0043231: intracellular membrane-bounded organelle	3.09E-02
35	GO:0009505: plant-type cell wall	3.63E-02