co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0048507: meristem development	2.53E-04
5	GO:0006949: syncytium formation	3.54E-04
6	GO:0006741: NADP biosynthetic process	4.52E-04
7	GO:0080181: lateral root branching	4.52E-04
8	GO:0010582: floral meristem determinacy	4.70E-04
9	GO:2000012: regulation of auxin polar transport	5.33E-04
10	GO:0006954: inflammatory response	7.36E-04
11	GO:0005977: glycogen metabolic process	7.36E-04
12	GO:0019674: NAD metabolic process	7.36E-04
13	GO:0005992: trehalose biosynthetic process	8.26E-04
14	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.05E-03
15	GO:0009664: plant-type cell wall organization	1.05E-03
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.05E-03
17	GO:0019363: pyridine nucleotide biosynthetic process	1.05E-03
18	GO:0010239: chloroplast mRNA processing	1.05E-03
19	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.18E-03
20	GO:0022622: root system development	1.40E-03
21	GO:0010021: amylopectin biosynthetic process	1.40E-03
22	GO:0006656: phosphatidylcholine biosynthetic process	1.78E-03
23	GO:0016558: protein import into peroxisome matrix	1.78E-03
24	GO:0010158: abaxial cell fate specification	1.78E-03
25	GO:0015979: photosynthesis	2.01E-03
26	GO:0009733: response to auxin	2.08E-03
27	GO:0032502: developmental process	2.11E-03
28	GO:0000741: karyogamy	2.19E-03
29	GO:0003006: developmental process involved in reproduction	2.19E-03
30	GO:0042549: photosystem II stabilization	2.19E-03
31	GO:0009828: plant-type cell wall loosening	2.39E-03
32	GO:1901259: chloroplast rRNA processing	2.63E-03
33	GO:0010189: vitamin E biosynthetic process	2.63E-03
34	GO:0010050: vegetative phase change	3.09E-03
35	GO:0010103: stomatal complex morphogenesis	3.09E-03
36	GO:0032880: regulation of protein localization	3.09E-03
37	GO:0040008: regulation of growth	3.37E-03
38	GO:0070413: trehalose metabolism in response to stress	3.59E-03
39	GO:0030091: protein repair	3.59E-03
40	GO:0009850: auxin metabolic process	3.59E-03
41	GO:0006605: protein targeting	3.59E-03
42	GO:0010492: maintenance of shoot apical meristem identity	3.59E-03
43	GO:0009827: plant-type cell wall modification	4.10E-03
44	GO:0006098: pentose-phosphate shunt	4.65E-03
45	GO:0048589: developmental growth	4.65E-03
46	GO:0010205: photoinhibition	5.21E-03
47	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.80E-03
48	GO:0009826: unidimensional cell growth	5.93E-03
49	GO:0009773: photosynthetic electron transport in photosystem I	6.41E-03
50	GO:0009750: response to fructose	6.41E-03
51	GO:0010152: pollen maturation	7.04E-03
52	GO:0010628: positive regulation of gene expression	7.70E-03
53	GO:0006094: gluconeogenesis	7.70E-03
54	GO:0080167: response to karrikin	8.18E-03
55	GO:0010207: photosystem II assembly	8.37E-03
56	GO:0048467: gynoecium development	8.37E-03
57	GO:0019853: L-ascorbic acid biosynthetic process	9.07E-03
58	GO:0010030: positive regulation of seed germination	9.07E-03
59	GO:0006833: water transport	9.79E-03
60	GO:0080147: root hair cell development	1.05E-02
61	GO:0009740: gibberellic acid mediated signaling pathway	1.09E-02
62	GO:0009553: embryo sac development	1.13E-02
63	GO:0007017: microtubule-based process	1.13E-02
64	GO:0048511: rhythmic process	1.21E-02
65	GO:0009742: brassinosteroid mediated signaling pathway	1.23E-02
66	GO:0005975: carbohydrate metabolic process	1.23E-02
67	GO:0006012: galactose metabolic process	1.37E-02
68	GO:0048443: stamen development	1.45E-02
69	GO:0006284: base-excision repair	1.45E-02
70	GO:0009306: protein secretion	1.45E-02
71	GO:0008284: positive regulation of cell proliferation	1.54E-02
72	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.54E-02
73	GO:0034220: ion transmembrane transport	1.62E-02
74	GO:0042631: cellular response to water deprivation	1.62E-02
75	GO:0009958: positive gravitropism	1.71E-02
76	GO:0010197: polar nucleus fusion	1.71E-02
77	GO:0048868: pollen tube development	1.71E-02
78	GO:0046323: glucose import	1.71E-02
79	GO:0009741: response to brassinosteroid	1.71E-02
80	GO:0007018: microtubule-based movement	1.80E-02
81	GO:0006814: sodium ion transport	1.80E-02
82	GO:0042752: regulation of circadian rhythm	1.80E-02
83	GO:0009749: response to glucose	1.89E-02
84	GO:0019252: starch biosynthetic process	1.89E-02
85	GO:0008654: phospholipid biosynthetic process	1.89E-02
86	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.99E-02
87	GO:0010193: response to ozone	1.99E-02
88	GO:0006635: fatty acid beta-oxidation	1.99E-02
89	GO:0009451: RNA modification	2.06E-02
90	GO:0009734: auxin-activated signaling pathway	2.07E-02
91	GO:0016032: viral process	2.08E-02
92	GO:0009739: response to gibberellin	2.25E-02
93	GO:0007166: cell surface receptor signaling pathway	2.30E-02
94	GO:0001666: response to hypoxia	2.58E-02
95	GO:0010027: thylakoid membrane organization	2.58E-02
96	GO:0009416: response to light stimulus	2.77E-02
97	GO:0016310: phosphorylation	2.78E-02
98	GO:0009627: systemic acquired resistance	2.80E-02
99	GO:0010411: xyloglucan metabolic process	2.90E-02
100	GO:0016311: dephosphorylation	3.01E-02
101	GO:0009817: defense response to fungus, incompatible interaction	3.12E-02
102	GO:0048481: plant ovule development	3.12E-02
103	GO:0006811: ion transport	3.35E-02
104	GO:0048527: lateral root development	3.46E-02
105	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.99E-02
106	GO:0044550: secondary metabolite biosynthetic process	4.19E-02
107	GO:0055114: oxidation-reduction process	4.40E-02
108	GO:0009640: photomorphogenesis	4.42E-02
109	GO:0009744: response to sucrose	4.42E-02
110	GO:0051707: response to other organism	4.42E-02
111	GO:0006952: defense response	4.47E-02
112	GO:0042546: cell wall biogenesis	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0042623: ATPase activity, coupled	0.00E+00
2	GO:0010276: phytol kinase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0042736: NADH kinase activity	2.02E-04
5	GO:0004805: trehalose-phosphatase activity	3.54E-04
6	GO:0019156: isoamylase activity	4.52E-04
7	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.52E-04
8	GO:0008508: bile acid:sodium symporter activity	1.05E-03
9	GO:0005354: galactose transmembrane transporter activity	1.05E-03
10	GO:0010011: auxin binding	1.40E-03
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.40E-03
12	GO:0008725: DNA-3-methyladenine glycosylase activity	1.78E-03
13	GO:0000293: ferric-chelate reductase activity	2.19E-03
14	GO:0042578: phosphoric ester hydrolase activity	2.19E-03
15	GO:0004556: alpha-amylase activity	2.19E-03
16	GO:0004462: lactoylglutathione lyase activity	2.19E-03
17	GO:0004605: phosphatidate cytidylyltransferase activity	2.19E-03
18	GO:0004332: fructose-bisphosphate aldolase activity	2.19E-03
19	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.63E-03
20	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.63E-03
21	GO:0008195: phosphatidate phosphatase activity	2.63E-03
22	GO:0004033: aldo-keto reductase (NADP) activity	3.59E-03
23	GO:0003951: NAD+ kinase activity	4.10E-03
24	GO:0003993: acid phosphatase activity	4.90E-03
25	GO:0015020: glucuronosyltransferase activity	5.80E-03
26	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.41E-03
27	GO:0004521: endoribonuclease activity	7.04E-03
28	GO:0008081: phosphoric diester hydrolase activity	7.70E-03
29	GO:0008083: growth factor activity	8.37E-03
30	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.37E-03
31	GO:0008146: sulfotransferase activity	9.07E-03
32	GO:0016491: oxidoreductase activity	9.62E-03
33	GO:0030570: pectate lyase activity	1.37E-02
34	GO:0003727: single-stranded RNA binding	1.45E-02
35	GO:0005355: glucose transmembrane transporter activity	1.80E-02
36	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.88E-02
37	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.99E-02
38	GO:0048038: quinone binding	1.99E-02
39	GO:0016791: phosphatase activity	2.28E-02
40	GO:0015250: water channel activity	2.58E-02
41	GO:0004721: phosphoprotein phosphatase activity	2.90E-02
42	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.90E-02
43	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.01E-02
44	GO:0008236: serine-type peptidase activity	3.01E-02
45	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.12E-02
46	GO:0005096: GTPase activator activity	3.23E-02
47	GO:0030145: manganese ion binding	3.46E-02
48	GO:0004185: serine-type carboxypeptidase activity	4.42E-02
49	GO:0043621: protein self-association	4.68E-02
50	GO:0004871: signal transducer activity	4.82E-02
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.93E-02
52	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0009538: photosystem I reaction center	1.67E-04
4	GO:0009535: chloroplast thylakoid membrane	2.41E-04
5	GO:0030095: chloroplast photosystem II	6.01E-04
6	GO:0009531: secondary cell wall	1.05E-03
7	GO:0030286: dynein complex	1.40E-03
8	GO:0009507: chloroplast	1.85E-03
9	GO:0009543: chloroplast thylakoid lumen	2.38E-03
10	GO:0009533: chloroplast stromal thylakoid	3.09E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.65E-03
12	GO:0090404: pollen tube tip	6.41E-03
13	GO:0016020: membrane	8.80E-03
14	GO:0009579: thylakoid	9.30E-03
15	GO:0009654: photosystem II oxygen evolving complex	1.13E-02
16	GO:0005871: kinesin complex	1.54E-02
17	GO:0009523: photosystem II	1.89E-02
18	GO:0019898: extrinsic component of membrane	1.89E-02
19	GO:0005778: peroxisomal membrane	2.38E-02
20	GO:0009534: chloroplast thylakoid	3.50E-02
21	GO:0031225: anchored component of membrane	4.78E-02