GO Enrichment Analysis of Co-expressed Genes with
AT3G12390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006044: N-acetylglucosamine metabolic process | 0.00E+00 |
| 2 | GO:0000740: nuclear membrane fusion | 0.00E+00 |
| 3 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 4 | GO:0015822: ornithine transport | 0.00E+00 |
| 5 | GO:0006412: translation | 4.59E-108 |
| 6 | GO:0042254: ribosome biogenesis | 1.83E-52 |
| 7 | GO:0000027: ribosomal large subunit assembly | 1.96E-09 |
| 8 | GO:0000028: ribosomal small subunit assembly | 1.02E-05 |
| 9 | GO:1902626: assembly of large subunit precursor of preribosome | 1.77E-05 |
| 10 | GO:0009245: lipid A biosynthetic process | 2.02E-05 |
| 11 | GO:0000387: spliceosomal snRNP assembly | 2.70E-05 |
| 12 | GO:0006407: rRNA export from nucleus | 3.32E-04 |
| 13 | GO:0015801: aromatic amino acid transport | 3.32E-04 |
| 14 | GO:0000066: mitochondrial ornithine transport | 3.32E-04 |
| 15 | GO:2001006: regulation of cellulose biosynthetic process | 3.32E-04 |
| 16 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.32E-04 |
| 17 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.32E-04 |
| 18 | GO:0006432: phenylalanyl-tRNA aminoacylation | 7.24E-04 |
| 19 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 7.24E-04 |
| 20 | GO:0071668: plant-type cell wall assembly | 7.24E-04 |
| 21 | GO:0010198: synergid death | 7.24E-04 |
| 22 | GO:0000398: mRNA splicing, via spliceosome | 9.92E-04 |
| 23 | GO:0006626: protein targeting to mitochondrion | 1.06E-03 |
| 24 | GO:0006414: translational elongation | 1.14E-03 |
| 25 | GO:1904278: positive regulation of wax biosynthetic process | 1.17E-03 |
| 26 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 1.17E-03 |
| 27 | GO:0042256: mature ribosome assembly | 1.17E-03 |
| 28 | GO:0008216: spermidine metabolic process | 1.17E-03 |
| 29 | GO:0010452: histone H3-K36 methylation | 1.17E-03 |
| 30 | GO:0006406: mRNA export from nucleus | 1.65E-03 |
| 31 | GO:0009558: embryo sac cellularization | 1.68E-03 |
| 32 | GO:0070301: cellular response to hydrogen peroxide | 1.68E-03 |
| 33 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.68E-03 |
| 34 | GO:0006241: CTP biosynthetic process | 1.68E-03 |
| 35 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.68E-03 |
| 36 | GO:0006165: nucleoside diphosphate phosphorylation | 1.68E-03 |
| 37 | GO:0006228: UTP biosynthetic process | 1.68E-03 |
| 38 | GO:0009165: nucleotide biosynthetic process | 2.26E-03 |
| 39 | GO:1900864: mitochondrial RNA modification | 2.26E-03 |
| 40 | GO:0010387: COP9 signalosome assembly | 2.26E-03 |
| 41 | GO:0006183: GTP biosynthetic process | 2.26E-03 |
| 42 | GO:0045040: protein import into mitochondrial outer membrane | 3.57E-03 |
| 43 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 3.57E-03 |
| 44 | GO:0051568: histone H3-K4 methylation | 3.57E-03 |
| 45 | GO:0043248: proteasome assembly | 3.57E-03 |
| 46 | GO:0000054: ribosomal subunit export from nucleus | 4.30E-03 |
| 47 | GO:0000911: cytokinesis by cell plate formation | 4.30E-03 |
| 48 | GO:0009651: response to salt stress | 4.81E-03 |
| 49 | GO:0006826: iron ion transport | 5.07E-03 |
| 50 | GO:0032880: regulation of protein localization | 5.07E-03 |
| 51 | GO:0000338: protein deneddylation | 5.07E-03 |
| 52 | GO:0009735: response to cytokinin | 5.30E-03 |
| 53 | GO:0009231: riboflavin biosynthetic process | 5.89E-03 |
| 54 | GO:0006526: arginine biosynthetic process | 6.76E-03 |
| 55 | GO:0009808: lignin metabolic process | 6.76E-03 |
| 56 | GO:0048589: developmental growth | 7.67E-03 |
| 57 | GO:0006633: fatty acid biosynthetic process | 7.96E-03 |
| 58 | GO:0010267: production of ta-siRNAs involved in RNA interference | 8.61E-03 |
| 59 | GO:0016441: posttranscriptional gene silencing | 9.61E-03 |
| 60 | GO:0006839: mitochondrial transport | 1.10E-02 |
| 61 | GO:0016925: protein sumoylation | 1.17E-02 |
| 62 | GO:0010102: lateral root morphogenesis | 1.28E-02 |
| 63 | GO:0009644: response to high light intensity | 1.35E-02 |
| 64 | GO:0009793: embryo development ending in seed dormancy | 1.36E-02 |
| 65 | GO:0006446: regulation of translational initiation | 1.40E-02 |
| 66 | GO:0048467: gynoecium development | 1.40E-02 |
| 67 | GO:0009965: leaf morphogenesis | 1.40E-02 |
| 68 | GO:0010020: chloroplast fission | 1.40E-02 |
| 69 | GO:0010039: response to iron ion | 1.51E-02 |
| 70 | GO:0034976: response to endoplasmic reticulum stress | 1.63E-02 |
| 71 | GO:0006289: nucleotide-excision repair | 1.76E-02 |
| 72 | GO:0009116: nucleoside metabolic process | 1.76E-02 |
| 73 | GO:0030150: protein import into mitochondrial matrix | 1.76E-02 |
| 74 | GO:0003333: amino acid transmembrane transport | 2.02E-02 |
| 75 | GO:0061077: chaperone-mediated protein folding | 2.02E-02 |
| 76 | GO:0016226: iron-sulfur cluster assembly | 2.15E-02 |
| 77 | GO:0007005: mitochondrion organization | 2.15E-02 |
| 78 | GO:0006606: protein import into nucleus | 2.72E-02 |
| 79 | GO:0010197: polar nucleus fusion | 2.87E-02 |
| 80 | GO:0080156: mitochondrial mRNA modification | 3.33E-02 |
| 81 | GO:0009409: response to cold | 3.48E-02 |
| 82 | GO:0031047: gene silencing by RNA | 3.49E-02 |
| 83 | GO:0009630: gravitropism | 3.49E-02 |
| 84 | GO:0006397: mRNA processing | 3.52E-02 |
| 85 | GO:0010090: trichome morphogenesis | 3.66E-02 |
| 86 | GO:0010286: heat acclimation | 3.99E-02 |
| 87 | GO:0016126: sterol biosynthetic process | 4.33E-02 |
| 88 | GO:0008380: RNA splicing | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004055: argininosuccinate synthase activity | 0.00E+00 |
| 2 | GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity | 0.00E+00 |
| 3 | GO:0004746: riboflavin synthase activity | 0.00E+00 |
| 4 | GO:0061799: cyclic pyranopterin monophosphate synthase activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 1.89E-140 |
| 6 | GO:0003729: mRNA binding | 1.61E-32 |
| 7 | GO:0019843: rRNA binding | 3.14E-13 |
| 8 | GO:0031177: phosphopantetheine binding | 2.43E-06 |
| 9 | GO:0000035: acyl binding | 4.21E-06 |
| 10 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.02E-05 |
| 11 | GO:0001055: RNA polymerase II activity | 2.70E-05 |
| 12 | GO:0001054: RNA polymerase I activity | 4.47E-05 |
| 13 | GO:0001056: RNA polymerase III activity | 5.59E-05 |
| 14 | GO:0003723: RNA binding | 9.08E-05 |
| 15 | GO:0072549: monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity | 3.32E-04 |
| 16 | GO:0072548: dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity | 3.32E-04 |
| 17 | GO:0035614: snRNA stem-loop binding | 3.32E-04 |
| 18 | GO:0072547: tricoumaroylspermidine meta-hydroxylase activity | 3.32E-04 |
| 19 | GO:0030619: U1 snRNA binding | 7.24E-04 |
| 20 | GO:0015173: aromatic amino acid transmembrane transporter activity | 7.24E-04 |
| 21 | GO:0000064: L-ornithine transmembrane transporter activity | 7.24E-04 |
| 22 | GO:0004826: phenylalanine-tRNA ligase activity | 7.24E-04 |
| 23 | GO:0070180: large ribosomal subunit rRNA binding | 1.17E-03 |
| 24 | GO:0070181: small ribosomal subunit rRNA binding | 1.17E-03 |
| 25 | GO:0003697: single-stranded DNA binding | 1.41E-03 |
| 26 | GO:0004550: nucleoside diphosphate kinase activity | 1.68E-03 |
| 27 | GO:0008097: 5S rRNA binding | 1.68E-03 |
| 28 | GO:0004749: ribose phosphate diphosphokinase activity | 1.68E-03 |
| 29 | GO:0000254: C-4 methylsterol oxidase activity | 1.68E-03 |
| 30 | GO:0005319: lipid transporter activity | 2.26E-03 |
| 31 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.37E-03 |
| 32 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.85E-03 |
| 33 | GO:0005275: amine transmembrane transporter activity | 2.89E-03 |
| 34 | GO:0031386: protein tag | 2.89E-03 |
| 35 | GO:0008143: poly(A) binding | 5.07E-03 |
| 36 | GO:0042162: telomeric DNA binding | 5.07E-03 |
| 37 | GO:0043022: ribosome binding | 5.89E-03 |
| 38 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.61E-03 |
| 39 | GO:0000049: tRNA binding | 1.17E-02 |
| 40 | GO:0031072: heat shock protein binding | 1.28E-02 |
| 41 | GO:0015266: protein channel activity | 1.28E-02 |
| 42 | GO:0005528: FK506 binding | 1.76E-02 |
| 43 | GO:0003756: protein disulfide isomerase activity | 2.43E-02 |
| 44 | GO:0008080: N-acetyltransferase activity | 2.87E-02 |
| 45 | GO:0008375: acetylglucosaminyltransferase activity | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097361: CIA complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 4 | GO:0005840: ribosome | 1.97E-105 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 2.80E-80 |
| 6 | GO:0022626: cytosolic ribosome | 7.81E-79 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 4.56E-52 |
| 8 | GO:0005737: cytoplasm | 8.90E-27 |
| 9 | GO:0005730: nucleolus | 6.28E-24 |
| 10 | GO:0005829: cytosol | 5.37E-23 |
| 11 | GO:0009506: plasmodesma | 1.58E-15 |
| 12 | GO:0015934: large ribosomal subunit | 6.08E-10 |
| 13 | GO:0005774: vacuolar membrane | 2.53E-08 |
| 14 | GO:0016020: membrane | 8.58E-08 |
| 15 | GO:0015935: small ribosomal subunit | 2.13E-07 |
| 16 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.04E-06 |
| 17 | GO:0005618: cell wall | 2.11E-06 |
| 18 | GO:0005736: DNA-directed RNA polymerase I complex | 2.02E-05 |
| 19 | GO:0005666: DNA-directed RNA polymerase III complex | 2.70E-05 |
| 20 | GO:0005665: DNA-directed RNA polymerase II, core complex | 5.59E-05 |
| 21 | GO:0019013: viral nucleocapsid | 6.85E-05 |
| 22 | GO:0000419: DNA-directed RNA polymerase V complex | 1.17E-04 |
| 23 | GO:0070469: respiratory chain | 1.57E-04 |
| 24 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 3.32E-04 |
| 25 | GO:0030686: 90S preribosome | 3.32E-04 |
| 26 | GO:0005742: mitochondrial outer membrane translocase complex | 4.31E-04 |
| 27 | GO:0005685: U1 snRNP | 5.18E-04 |
| 28 | GO:0005681: spliceosomal complex | 6.03E-04 |
| 29 | GO:0071011: precatalytic spliceosome | 6.12E-04 |
| 30 | GO:0000418: DNA-directed RNA polymerase IV complex | 7.14E-04 |
| 31 | GO:0005697: telomerase holoenzyme complex | 7.24E-04 |
| 32 | GO:0009706: chloroplast inner membrane | 8.00E-04 |
| 33 | GO:0071013: catalytic step 2 spliceosome | 8.23E-04 |
| 34 | GO:0048471: perinuclear region of cytoplasm | 8.23E-04 |
| 35 | GO:0034719: SMN-Sm protein complex | 1.17E-03 |
| 36 | GO:0005853: eukaryotic translation elongation factor 1 complex | 1.17E-03 |
| 37 | GO:0000439: core TFIIH complex | 1.17E-03 |
| 38 | GO:1990726: Lsm1-7-Pat1 complex | 1.68E-03 |
| 39 | GO:0005682: U5 snRNP | 2.26E-03 |
| 40 | GO:0000445: THO complex part of transcription export complex | 2.26E-03 |
| 41 | GO:0016593: Cdc73/Paf1 complex | 2.26E-03 |
| 42 | GO:0005773: vacuole | 2.69E-03 |
| 43 | GO:0005687: U4 snRNP | 2.89E-03 |
| 44 | GO:0097526: spliceosomal tri-snRNP complex | 2.89E-03 |
| 45 | GO:0009507: chloroplast | 2.92E-03 |
| 46 | GO:0005689: U12-type spliceosomal complex | 4.30E-03 |
| 47 | GO:0005762: mitochondrial large ribosomal subunit | 4.30E-03 |
| 48 | GO:0000347: THO complex | 5.07E-03 |
| 49 | GO:0071004: U2-type prespliceosome | 5.89E-03 |
| 50 | GO:0005688: U6 snRNP | 5.89E-03 |
| 51 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 6.76E-03 |
| 52 | GO:0008180: COP9 signalosome | 7.67E-03 |
| 53 | GO:0005759: mitochondrial matrix | 7.96E-03 |
| 54 | GO:0005686: U2 snRNP | 9.61E-03 |
| 55 | GO:0009536: plastid | 1.04E-02 |
| 56 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.06E-02 |
| 57 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.06E-02 |
| 58 | GO:0031307: integral component of mitochondrial outer membrane | 1.17E-02 |
| 59 | GO:0009508: plastid chromosome | 1.28E-02 |
| 60 | GO:0000502: proteasome complex | 1.69E-02 |
| 61 | GO:0005758: mitochondrial intermembrane space | 1.76E-02 |
| 62 | GO:0005834: heterotrimeric G-protein complex | 2.13E-02 |
| 63 | GO:0005743: mitochondrial inner membrane | 3.05E-02 |
| 64 | GO:0009295: nucleoid | 3.99E-02 |
| 65 | GO:0000932: P-body | 4.33E-02 |
| 66 | GO:0005788: endoplasmic reticulum lumen | 4.51E-02 |
| 67 | GO:0005622: intracellular | 4.89E-02 |