Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12345

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0009715: chalcone biosynthetic process0.00E+00
5GO:0017009: protein-phycocyanobilin linkage0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:1901965: endoplasmic reticulum to chloroplast transport0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0051246: regulation of protein metabolic process0.00E+00
12GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
13GO:0090391: granum assembly2.38E-08
14GO:0010136: ureide catabolic process2.38E-08
15GO:0006145: purine nucleobase catabolic process1.16E-07
16GO:0015979: photosynthesis2.52E-06
17GO:0010189: vitamin E biosynthetic process2.59E-06
18GO:0015995: chlorophyll biosynthetic process3.19E-06
19GO:0000256: allantoin catabolic process3.47E-06
20GO:0018298: protein-chromophore linkage4.17E-06
21GO:0048564: photosystem I assembly6.33E-06
22GO:0009657: plastid organization9.16E-06
23GO:0055114: oxidation-reduction process1.97E-05
24GO:0006021: inositol biosynthetic process5.05E-05
25GO:0019253: reductive pentose-phosphate cycle5.44E-05
26GO:0009658: chloroplast organization7.70E-05
27GO:0009643: photosynthetic acclimation1.17E-04
28GO:0046855: inositol phosphate dephosphorylation1.17E-04
29GO:0009735: response to cytokinin1.95E-04
30GO:0009644: response to high light intensity2.08E-04
31GO:0007623: circadian rhythm2.10E-04
32GO:0010196: nonphotochemical quenching2.10E-04
33GO:0009642: response to light intensity2.66E-04
34GO:0009443: pyridoxal 5'-phosphate salvage2.75E-04
35GO:0010362: negative regulation of anion channel activity by blue light2.75E-04
36GO:0031426: polycistronic mRNA processing2.75E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process2.75E-04
38GO:1990052: ER to chloroplast lipid transport2.75E-04
39GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.75E-04
40GO:1904964: positive regulation of phytol biosynthetic process2.75E-04
41GO:0071277: cellular response to calcium ion2.75E-04
42GO:0042371: vitamin K biosynthetic process2.75E-04
43GO:0006436: tryptophanyl-tRNA aminoacylation2.75E-04
44GO:0010028: xanthophyll cycle2.75E-04
45GO:0009791: post-embryonic development3.00E-04
46GO:0010027: thylakoid membrane organization5.32E-04
47GO:0006729: tetrahydrobiopterin biosynthetic process6.04E-04
48GO:0030388: fructose 1,6-bisphosphate metabolic process6.04E-04
49GO:0080185: effector dependent induction by symbiont of host immune response6.04E-04
50GO:0010275: NAD(P)H dehydrogenase complex assembly6.04E-04
51GO:0009629: response to gravity6.04E-04
52GO:0080005: photosystem stoichiometry adjustment6.04E-04
53GO:0046741: transport of virus in host, tissue to tissue6.04E-04
54GO:0042853: L-alanine catabolic process6.04E-04
55GO:0009915: phloem sucrose loading6.04E-04
56GO:0010042: response to manganese ion6.04E-04
57GO:1902326: positive regulation of chlorophyll biosynthetic process6.04E-04
58GO:0030187: melatonin biosynthetic process6.04E-04
59GO:0042548: regulation of photosynthesis, light reaction6.04E-04
60GO:0034755: iron ion transmembrane transport6.04E-04
61GO:0006435: threonyl-tRNA aminoacylation6.04E-04
62GO:0080183: response to photooxidative stress6.04E-04
63GO:0016122: xanthophyll metabolic process6.04E-04
64GO:0009773: photosynthetic electron transport in photosystem I6.30E-04
65GO:0006790: sulfur compound metabolic process7.20E-04
66GO:0009767: photosynthetic electron transport chain8.15E-04
67GO:0005986: sucrose biosynthetic process8.15E-04
68GO:0010207: photosystem II assembly9.17E-04
69GO:0006000: fructose metabolic process9.79E-04
70GO:0009405: pathogenesis9.79E-04
71GO:0006013: mannose metabolic process9.79E-04
72GO:0009853: photorespiration1.00E-03
73GO:0046854: phosphatidylinositol phosphorylation1.02E-03
74GO:0006833: water transport1.14E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I1.38E-03
76GO:0006166: purine ribonucleoside salvage1.40E-03
77GO:0006020: inositol metabolic process1.40E-03
78GO:0071484: cellular response to light intensity1.40E-03
79GO:0046653: tetrahydrofolate metabolic process1.40E-03
80GO:0010239: chloroplast mRNA processing1.40E-03
81GO:0009052: pentose-phosphate shunt, non-oxidative branch1.40E-03
82GO:0006809: nitric oxide biosynthetic process1.40E-03
83GO:0046739: transport of virus in multicellular host1.40E-03
84GO:0042989: sequestering of actin monomers1.40E-03
85GO:0006168: adenine salvage1.40E-03
86GO:0050482: arachidonic acid secretion1.40E-03
87GO:0043572: plastid fission1.40E-03
88GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.40E-03
89GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.40E-03
90GO:0015994: chlorophyll metabolic process1.87E-03
91GO:0006546: glycine catabolic process1.87E-03
92GO:0009902: chloroplast relocation1.87E-03
93GO:0034220: ion transmembrane transport2.30E-03
94GO:0044209: AMP salvage2.39E-03
95GO:0030041: actin filament polymerization2.39E-03
96GO:0010117: photoprotection2.39E-03
97GO:0010236: plastoquinone biosynthetic process2.39E-03
98GO:0043097: pyrimidine nucleoside salvage2.39E-03
99GO:0006810: transport2.79E-03
100GO:0042549: photosystem II stabilization2.95E-03
101GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.95E-03
102GO:0010190: cytochrome b6f complex assembly2.95E-03
103GO:0009117: nucleotide metabolic process2.95E-03
104GO:0006206: pyrimidine nucleobase metabolic process2.95E-03
105GO:0050665: hydrogen peroxide biosynthetic process2.95E-03
106GO:0010193: response to ozone3.06E-03
107GO:0046686: response to cadmium ion3.17E-03
108GO:0080167: response to karrikin3.23E-03
109GO:0009648: photoperiodism3.55E-03
110GO:0071470: cellular response to osmotic stress3.55E-03
111GO:0009854: oxidative photosynthetic carbon pathway3.55E-03
112GO:0009416: response to light stimulus3.79E-03
113GO:0006979: response to oxidative stress4.08E-03
114GO:0048528: post-embryonic root development4.19E-03
115GO:0030026: cellular manganese ion homeostasis4.19E-03
116GO:0009645: response to low light intensity stimulus4.19E-03
117GO:0051510: regulation of unidimensional cell growth4.19E-03
118GO:0009058: biosynthetic process4.46E-03
119GO:0006644: phospholipid metabolic process4.86E-03
120GO:0009704: de-etiolation4.86E-03
121GO:0031540: regulation of anthocyanin biosynthetic process4.86E-03
122GO:0006002: fructose 6-phosphate metabolic process5.57E-03
123GO:0032544: plastid translation5.57E-03
124GO:0006413: translational initiation5.75E-03
125GO:0006457: protein folding5.96E-03
126GO:0098656: anion transmembrane transport6.31E-03
127GO:0009821: alkaloid biosynthetic process6.31E-03
128GO:0009245: lipid A biosynthetic process6.31E-03
129GO:0090333: regulation of stomatal closure6.31E-03
130GO:0048507: meristem development6.31E-03
131GO:0006754: ATP biosynthetic process6.31E-03
132GO:0000373: Group II intron splicing6.31E-03
133GO:0007568: aging6.66E-03
134GO:0009638: phototropism7.09E-03
135GO:1900426: positive regulation of defense response to bacterium7.09E-03
136GO:0009637: response to blue light7.30E-03
137GO:0034599: cellular response to oxidative stress7.63E-03
138GO:0006259: DNA metabolic process7.90E-03
139GO:0009970: cellular response to sulfate starvation7.90E-03
140GO:0006995: cellular response to nitrogen starvation7.90E-03
141GO:0045036: protein targeting to chloroplast7.90E-03
142GO:0009641: shade avoidance7.90E-03
143GO:0006265: DNA topological change8.74E-03
144GO:0043085: positive regulation of catalytic activity8.74E-03
145GO:0006879: cellular iron ion homeostasis8.74E-03
146GO:0006415: translational termination8.74E-03
147GO:0018119: peptidyl-cysteine S-nitrosylation8.74E-03
148GO:0010114: response to red light9.42E-03
149GO:0006094: gluconeogenesis1.05E-02
150GO:0006006: glucose metabolic process1.05E-02
151GO:0009266: response to temperature stimulus1.14E-02
152GO:0010020: chloroplast fission1.14E-02
153GO:0010223: secondary shoot formation1.14E-02
154GO:0046688: response to copper ion1.24E-02
155GO:0019853: L-ascorbic acid biosynthetic process1.24E-02
156GO:0090351: seedling development1.24E-02
157GO:0010224: response to UV-B1.32E-02
158GO:0007010: cytoskeleton organization1.44E-02
159GO:0006096: glycolytic process1.51E-02
160GO:0051302: regulation of cell division1.55E-02
161GO:0008299: isoprenoid biosynthetic process1.55E-02
162GO:0006418: tRNA aminoacylation for protein translation1.55E-02
163GO:0006825: copper ion transport1.55E-02
164GO:0019748: secondary metabolic process1.76E-02
165GO:0045454: cell redox homeostasis1.81E-02
166GO:0006396: RNA processing1.87E-02
167GO:0055085: transmembrane transport1.99E-02
168GO:0009306: protein secretion1.99E-02
169GO:0009409: response to cold2.18E-02
170GO:0010118: stomatal movement2.23E-02
171GO:0006606: protein import into nucleus2.23E-02
172GO:0042335: cuticle development2.23E-02
173GO:0000413: protein peptidyl-prolyl isomerization2.23E-02
174GO:0006662: glycerol ether metabolic process2.35E-02
175GO:0009845: seed germination2.46E-02
176GO:0007059: chromosome segregation2.47E-02
177GO:0019252: starch biosynthetic process2.60E-02
178GO:0000302: response to reactive oxygen species2.73E-02
179GO:0007264: small GTPase mediated signal transduction2.86E-02
180GO:0016032: viral process2.86E-02
181GO:0010286: heat acclimation3.27E-02
182GO:0009816: defense response to bacterium, incompatible interaction3.69E-02
183GO:0010468: regulation of gene expression3.75E-02
184GO:0009627: systemic acquired resistance3.84E-02
185GO:0042128: nitrate assimilation3.84E-02
186GO:0048481: plant ovule development4.29E-02
187GO:0009817: defense response to fungus, incompatible interaction4.29E-02
188GO:0008219: cell death4.29E-02
189GO:0000160: phosphorelay signal transduction system4.44E-02
190GO:0009813: flavonoid biosynthetic process4.44E-02
191GO:0006811: ion transport4.59E-02
192GO:0010218: response to far red light4.59E-02
193GO:0048527: lateral root development4.75E-02
194GO:0042254: ribosome biogenesis4.93E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0050281: serine-glyoxylate transaminase activity0.00E+00
3GO:0047652: allantoate deiminase activity0.00E+00
4GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0016210: naringenin-chalcone synthase activity0.00E+00
7GO:0045550: geranylgeranyl reductase activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0008115: sarcosine oxidase activity0.00E+00
10GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
11GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0009976: tocopherol cyclase activity0.00E+00
14GO:0008974: phosphoribulokinase activity0.00E+00
15GO:0015229: L-ascorbic acid transporter activity0.00E+00
16GO:0004760: serine-pyruvate transaminase activity0.00E+00
17GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
18GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
19GO:0010486: manganese:proton antiporter activity0.00E+00
20GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
21GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
22GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
23GO:0052832: inositol monophosphate 3-phosphatase activity3.47E-06
24GO:0008934: inositol monophosphate 1-phosphatase activity3.47E-06
25GO:0052833: inositol monophosphate 4-phosphatase activity3.47E-06
26GO:0070402: NADPH binding1.24E-05
27GO:0016168: chlorophyll binding5.03E-05
28GO:0008453: alanine-glyoxylate transaminase activity5.05E-05
29GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.60E-04
30GO:0008080: N-acetyltransferase activity2.47E-04
31GO:0035671: enone reductase activity2.75E-04
32GO:0004451: isocitrate lyase activity2.75E-04
33GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.75E-04
34GO:0004008: copper-exporting ATPase activity2.75E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.75E-04
36GO:0004830: tryptophan-tRNA ligase activity2.75E-04
37GO:0030941: chloroplast targeting sequence binding2.75E-04
38GO:0010347: L-galactose-1-phosphate phosphatase activity2.75E-04
39GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.75E-04
40GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.75E-04
41GO:0004047: aminomethyltransferase activity6.04E-04
42GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.04E-04
43GO:0004829: threonine-tRNA ligase activity6.04E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.04E-04
45GO:0010277: chlorophyllide a oxygenase [overall] activity9.79E-04
46GO:0050307: sucrose-phosphate phosphatase activity9.79E-04
47GO:0004848: ureidoglycolate hydrolase activity9.79E-04
48GO:0004148: dihydrolipoyl dehydrogenase activity9.79E-04
49GO:0004751: ribose-5-phosphate isomerase activity9.79E-04
50GO:0030267: glyoxylate reductase (NADP) activity9.79E-04
51GO:0004096: catalase activity9.79E-04
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.79E-04
53GO:0031409: pigment binding1.14E-03
54GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.40E-03
55GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.40E-03
56GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.40E-03
57GO:0035529: NADH pyrophosphatase activity1.40E-03
58GO:0003999: adenine phosphoribosyltransferase activity1.40E-03
59GO:0048027: mRNA 5'-UTR binding1.40E-03
60GO:0004792: thiosulfate sulfurtransferase activity1.40E-03
61GO:0016149: translation release factor activity, codon specific1.40E-03
62GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.40E-03
63GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.40E-03
64GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.40E-03
65GO:0016851: magnesium chelatase activity1.40E-03
66GO:0009882: blue light photoreceptor activity1.40E-03
67GO:0051537: 2 iron, 2 sulfur cluster binding1.51E-03
68GO:0022891: substrate-specific transmembrane transporter activity1.81E-03
69GO:0005319: lipid transporter activity1.87E-03
70GO:0051861: glycolipid binding1.87E-03
71GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.87E-03
72GO:0043495: protein anchor1.87E-03
73GO:0008891: glycolate oxidase activity1.87E-03
74GO:0016491: oxidoreductase activity2.19E-03
75GO:0004623: phospholipase A2 activity2.39E-03
76GO:0003785: actin monomer binding2.39E-03
77GO:0016853: isomerase activity2.67E-03
78GO:0010181: FMN binding2.67E-03
79GO:0031177: phosphopantetheine binding2.95E-03
80GO:0016462: pyrophosphatase activity2.95E-03
81GO:0000293: ferric-chelate reductase activity2.95E-03
82GO:0042578: phosphoric ester hydrolase activity2.95E-03
83GO:0004849: uridine kinase activity3.55E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.55E-03
85GO:0000035: acyl binding3.55E-03
86GO:0004559: alpha-mannosidase activity3.55E-03
87GO:0008237: metallopeptidase activity3.93E-03
88GO:0019899: enzyme binding4.19E-03
89GO:0015250: water channel activity4.42E-03
90GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.86E-03
91GO:0004033: aldo-keto reductase (NADP) activity4.86E-03
92GO:0008135: translation factor activity, RNA binding5.57E-03
93GO:0005375: copper ion transmembrane transporter activity5.57E-03
94GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.57E-03
95GO:0003924: GTPase activity5.84E-03
96GO:0046872: metal ion binding6.17E-03
97GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.31E-03
98GO:0003747: translation release factor activity6.31E-03
99GO:0009055: electron carrier activity6.50E-03
100GO:0050897: cobalt ion binding6.66E-03
101GO:0045309: protein phosphorylated amino acid binding7.09E-03
102GO:0005381: iron ion transmembrane transporter activity7.09E-03
103GO:0005384: manganese ion transmembrane transporter activity7.09E-03
104GO:0016844: strictosidine synthase activity7.09E-03
105GO:0008047: enzyme activator activity7.90E-03
106GO:0019904: protein domain specific binding8.74E-03
107GO:0008081: phosphoric diester hydrolase activity1.05E-02
108GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.05E-02
109GO:0005315: inorganic phosphate transmembrane transporter activity1.05E-02
110GO:0031072: heat shock protein binding1.05E-02
111GO:0000155: phosphorelay sensor kinase activity1.05E-02
112GO:0051287: NAD binding1.14E-02
113GO:0043424: protein histidine kinase binding1.55E-02
114GO:0008324: cation transmembrane transporter activity1.55E-02
115GO:0004176: ATP-dependent peptidase activity1.65E-02
116GO:0008514: organic anion transmembrane transporter activity1.99E-02
117GO:0003727: single-stranded RNA binding1.99E-02
118GO:0004812: aminoacyl-tRNA ligase activity2.11E-02
119GO:0047134: protein-disulfide reductase activity2.11E-02
120GO:0004791: thioredoxin-disulfide reductase activity2.47E-02
121GO:0008565: protein transporter activity2.73E-02
122GO:0048038: quinone binding2.73E-02
123GO:0005525: GTP binding2.92E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.99E-02
125GO:0008483: transaminase activity3.27E-02
126GO:0003743: translation initiation factor activity3.67E-02
127GO:0042802: identical protein binding3.99E-02
128GO:0016887: ATPase activity4.06E-02
129GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.14E-02
130GO:0030145: manganese ion binding4.75E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast1.55E-49
3GO:0009535: chloroplast thylakoid membrane3.92E-37
4GO:0009941: chloroplast envelope3.54E-25
5GO:0009570: chloroplast stroma7.64E-22
6GO:0009534: chloroplast thylakoid2.36E-19
7GO:0009579: thylakoid2.82E-14
8GO:0009543: chloroplast thylakoid lumen1.01E-05
9GO:0009523: photosystem II1.87E-05
10GO:0009706: chloroplast inner membrane6.66E-05
11GO:0009654: photosystem II oxygen evolving complex1.06E-04
12GO:0042651: thylakoid membrane1.06E-04
13GO:0031977: thylakoid lumen1.58E-04
14GO:0009782: photosystem I antenna complex2.75E-04
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.94E-04
16GO:0010319: stromule4.58E-04
17GO:0045254: pyruvate dehydrogenase complex6.04E-04
18GO:0010287: plastoglobule6.80E-04
19GO:0030095: chloroplast photosystem II9.17E-04
20GO:0033281: TAT protein transport complex9.79E-04
21GO:0010007: magnesium chelatase complex9.79E-04
22GO:0048046: apoplast1.06E-03
23GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.87E-03
24GO:0019898: extrinsic component of membrane2.86E-03
25GO:0031969: chloroplast membrane3.23E-03
26GO:0009295: nucleoid3.93E-03
27GO:0009533: chloroplast stromal thylakoid4.19E-03
28GO:0031359: integral component of chloroplast outer membrane4.19E-03
29GO:0005777: peroxisome4.83E-03
30GO:0009514: glyoxysome5.57E-03
31GO:0009539: photosystem II reaction center5.57E-03
32GO:0009707: chloroplast outer membrane5.76E-03
33GO:0042644: chloroplast nucleoid6.31E-03
34GO:0009508: plastid chromosome1.05E-02
35GO:0005938: cell cortex1.05E-02
36GO:0030076: light-harvesting complex1.24E-02
37GO:0022626: cytosolic ribosome1.30E-02
38GO:0016020: membrane1.33E-02
39GO:0045271: respiratory chain complex I1.55E-02
40GO:0005747: mitochondrial respiratory chain complex I1.56E-02
41GO:0015629: actin cytoskeleton1.88E-02
42GO:0005623: cell2.34E-02
43GO:0005770: late endosome2.35E-02
44GO:0009522: photosystem I2.47E-02
45GO:0005759: mitochondrial matrix2.86E-02
46GO:0005778: peroxisomal membrane3.27E-02
47GO:0015934: large ribosomal subunit4.75E-02
<
Gene type



Gene DE type