Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12320

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010243: response to organonitrogen compound0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0046677: response to antibiotic0.00E+00
4GO:0009644: response to high light intensity8.25E-06
5GO:0009416: response to light stimulus3.85E-05
6GO:0043496: regulation of protein homodimerization activity4.61E-05
7GO:0050992: dimethylallyl diphosphate biosynthetic process4.61E-05
8GO:0016122: xanthophyll metabolic process4.61E-05
9GO:0042754: negative regulation of circadian rhythm4.61E-05
10GO:0009915: phloem sucrose loading4.61E-05
11GO:0042548: regulation of photosynthesis, light reaction4.61E-05
12GO:0007623: circadian rhythm5.07E-05
13GO:0015696: ammonium transport1.23E-04
14GO:2001141: regulation of RNA biosynthetic process1.23E-04
15GO:0071484: cellular response to light intensity1.23E-04
16GO:0071483: cellular response to blue light1.69E-04
17GO:0015994: chlorophyll metabolic process1.69E-04
18GO:0072488: ammonium transmembrane transport1.69E-04
19GO:0010218: response to far red light1.78E-04
20GO:0009637: response to blue light2.06E-04
21GO:0010117: photoprotection2.19E-04
22GO:0009409: response to cold2.34E-04
23GO:0006810: transport2.67E-04
24GO:0010114: response to red light2.68E-04
25GO:0009643: photosynthetic acclimation2.72E-04
26GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.72E-04
27GO:0010189: vitamin E biosynthetic process3.27E-04
28GO:0009648: photoperiodism3.27E-04
29GO:0071470: cellular response to osmotic stress3.27E-04
30GO:0009585: red, far-red light phototransduction3.61E-04
31GO:0009645: response to low light intensity stimulus3.84E-04
32GO:0009769: photosynthesis, light harvesting in photosystem II3.84E-04
33GO:0048574: long-day photoperiodism, flowering5.05E-04
34GO:0009624: response to nematode5.10E-04
35GO:0045893: positive regulation of transcription, DNA-templated5.74E-04
36GO:0009641: shade avoidance6.99E-04
37GO:0009970: cellular response to sulfate starvation6.99E-04
38GO:0006995: cellular response to nitrogen starvation6.99E-04
39GO:0006352: DNA-templated transcription, initiation7.68E-04
40GO:0009773: photosynthetic electron transport in photosystem I7.68E-04
41GO:0010207: photosystem II assembly9.82E-04
42GO:0010223: secondary shoot formation9.82E-04
43GO:0009266: response to temperature stimulus9.82E-04
44GO:0009768: photosynthesis, light harvesting in photosystem I1.29E-03
45GO:0009658: chloroplast organization1.30E-03
46GO:0009269: response to desiccation1.37E-03
47GO:0010017: red or far-red light signaling pathway1.46E-03
48GO:0006606: protein import into nucleus1.81E-03
49GO:0019252: starch biosynthetic process2.09E-03
50GO:0015995: chlorophyll biosynthetic process3.13E-03
51GO:0018298: protein-chromophore linkage3.36E-03
52GO:0008219: cell death3.36E-03
53GO:0006811: ion transport3.59E-03
54GO:0034599: cellular response to oxidative stress4.06E-03
55GO:0006631: fatty acid metabolic process4.43E-03
56GO:0042542: response to hydrogen peroxide4.56E-03
57GO:0031347: regulation of defense response5.34E-03
58GO:0009909: regulation of flower development6.17E-03
59GO:0055114: oxidation-reduction process7.73E-03
60GO:0006979: response to oxidative stress8.37E-03
61GO:0042744: hydrogen peroxide catabolic process9.39E-03
62GO:0016036: cellular response to phosphate starvation1.02E-02
63GO:0009739: response to gibberellin1.16E-02
64GO:0010468: regulation of gene expression1.22E-02
65GO:0009723: response to ethylene1.62E-02
66GO:0015979: photosynthesis1.87E-02
67GO:0045454: cell redox homeostasis1.94E-02
68GO:0045892: negative regulation of transcription, DNA-templated1.96E-02
69GO:0009751: response to salicylic acid2.23E-02
70GO:0009753: response to jasmonic acid2.36E-02
RankGO TermAdjusted P value
1GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity0.00E+00
2GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
3GO:0009976: tocopherol cyclase activity0.00E+00
4GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
5GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity1.77E-05
6GO:0035671: enone reductase activity1.77E-05
7GO:0016853: isomerase activity6.79E-05
8GO:0004096: catalase activity8.18E-05
9GO:0010277: chlorophyllide a oxygenase [overall] activity8.18E-05
10GO:0004373: glycogen (starch) synthase activity8.18E-05
11GO:0009011: starch synthase activity1.69E-04
12GO:0001053: plastid sigma factor activity1.69E-04
13GO:0016987: sigma factor activity1.69E-04
14GO:0051538: 3 iron, 4 sulfur cluster binding2.19E-04
15GO:0008519: ammonium transmembrane transporter activity2.72E-04
16GO:0000293: ferric-chelate reductase activity2.72E-04
17GO:0019904: protein domain specific binding7.68E-04
18GO:0031409: pigment binding1.13E-03
19GO:0016168: chlorophyll binding2.91E-03
20GO:0016887: ATPase activity3.60E-03
21GO:0050897: cobalt ion binding3.70E-03
22GO:0051537: 2 iron, 2 sulfur cluster binding4.94E-03
23GO:0003899: DNA-directed 5'-3' RNA polymerase activity5.75E-03
24GO:0016874: ligase activity7.04E-03
25GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.74E-03
26GO:0005215: transporter activity9.18E-03
27GO:0008565: protein transporter activity9.73E-03
28GO:0009055: electron carrier activity2.36E-02
29GO:0005515: protein binding2.62E-02
RankGO TermAdjusted P value
1GO:0009535: chloroplast thylakoid membrane4.63E-06
2GO:0009507: chloroplast1.88E-05
3GO:0010287: plastoglobule2.81E-05
4GO:0042651: thylakoid membrane3.11E-05
5GO:0009569: chloroplast starch grain4.61E-05
6GO:0010319: stromule1.06E-04
7GO:0009517: PSII associated light-harvesting complex II1.69E-04
8GO:0009941: chloroplast envelope2.85E-04
9GO:0009514: glyoxysome5.05E-04
10GO:0009706: chloroplast inner membrane5.10E-04
11GO:0009534: chloroplast thylakoid6.12E-04
12GO:0030076: light-harvesting complex1.06E-03
13GO:0009522: photosystem I2.00E-03
14GO:0009523: photosystem II2.09E-03
15GO:0005777: peroxisome4.71E-03
16GO:0009579: thylakoid4.91E-03
17GO:0009570: chloroplast stroma1.24E-02
18GO:0005887: integral component of plasma membrane2.80E-02
19GO:0022626: cytosolic ribosome3.28E-02
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Gene type



Gene DE type