GO Enrichment Analysis of Co-expressed Genes with
AT3G12290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033317: pantothenate biosynthetic process from valine | 0.00E+00 |
| 2 | GO:0006482: protein demethylation | 0.00E+00 |
| 3 | GO:0015813: L-glutamate transport | 0.00E+00 |
| 4 | GO:0098586: cellular response to virus | 0.00E+00 |
| 5 | GO:0009583: detection of light stimulus | 0.00E+00 |
| 6 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 7 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 8 | GO:0010477: response to sulfur dioxide | 0.00E+00 |
| 9 | GO:0071000: response to magnetism | 0.00E+00 |
| 10 | GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine | 0.00E+00 |
| 11 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 12 | GO:0005997: xylulose metabolic process | 0.00E+00 |
| 13 | GO:0010343: singlet oxygen-mediated programmed cell death | 3.44E-07 |
| 14 | GO:0010117: photoprotection | 1.01E-05 |
| 15 | GO:0071461: cellular response to redox state | 7.90E-05 |
| 16 | GO:0071266: 'de novo' L-methionine biosynthetic process | 7.90E-05 |
| 17 | GO:0019346: transsulfuration | 7.90E-05 |
| 18 | GO:0019343: cysteine biosynthetic process via cystathionine | 7.90E-05 |
| 19 | GO:0072387: flavin adenine dinucleotide metabolic process | 7.90E-05 |
| 20 | GO:0043085: positive regulation of catalytic activity | 1.08E-04 |
| 21 | GO:0009767: photosynthetic electron transport chain | 1.45E-04 |
| 22 | GO:0016122: xanthophyll metabolic process | 1.89E-04 |
| 23 | GO:1901529: positive regulation of anion channel activity | 1.89E-04 |
| 24 | GO:0046741: transport of virus in host, tissue to tissue | 1.89E-04 |
| 25 | GO:0080005: photosystem stoichiometry adjustment | 1.89E-04 |
| 26 | GO:0010617: circadian regulation of calcium ion oscillation | 1.89E-04 |
| 27 | GO:0050688: regulation of defense response to virus | 1.89E-04 |
| 28 | GO:0099402: plant organ development | 1.89E-04 |
| 29 | GO:0046686: response to cadmium ion | 2.92E-04 |
| 30 | GO:1902448: positive regulation of shade avoidance | 3.17E-04 |
| 31 | GO:0006013: mannose metabolic process | 3.17E-04 |
| 32 | GO:1901672: positive regulation of systemic acquired resistance | 3.17E-04 |
| 33 | GO:0015940: pantothenate biosynthetic process | 3.17E-04 |
| 34 | GO:0071836: nectar secretion | 3.17E-04 |
| 35 | GO:0006696: ergosterol biosynthetic process | 3.17E-04 |
| 36 | GO:0016117: carotenoid biosynthetic process | 4.04E-04 |
| 37 | GO:0015729: oxaloacetate transport | 4.58E-04 |
| 38 | GO:0005987: sucrose catabolic process | 4.58E-04 |
| 39 | GO:1901332: negative regulation of lateral root development | 4.58E-04 |
| 40 | GO:0051289: protein homotetramerization | 4.58E-04 |
| 41 | GO:0043572: plastid fission | 4.58E-04 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 4.58E-04 |
| 43 | GO:0019676: ammonia assimilation cycle | 6.09E-04 |
| 44 | GO:0015743: malate transport | 6.09E-04 |
| 45 | GO:0015994: chlorophyll metabolic process | 6.09E-04 |
| 46 | GO:1902347: response to strigolactone | 6.09E-04 |
| 47 | GO:0007094: mitotic spindle assembly checkpoint | 7.72E-04 |
| 48 | GO:0009616: virus induced gene silencing | 7.72E-04 |
| 49 | GO:0071423: malate transmembrane transport | 7.72E-04 |
| 50 | GO:0016120: carotene biosynthetic process | 7.72E-04 |
| 51 | GO:0000304: response to singlet oxygen | 7.72E-04 |
| 52 | GO:0046283: anthocyanin-containing compound metabolic process | 7.72E-04 |
| 53 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.72E-04 |
| 54 | GO:1901371: regulation of leaf morphogenesis | 9.42E-04 |
| 55 | GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | 9.42E-04 |
| 56 | GO:0060918: auxin transport | 9.42E-04 |
| 57 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 9.42E-04 |
| 58 | GO:0010019: chloroplast-nucleus signaling pathway | 1.12E-03 |
| 59 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.12E-03 |
| 60 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.12E-03 |
| 61 | GO:0010016: shoot system morphogenesis | 1.12E-03 |
| 62 | GO:0007568: aging | 1.21E-03 |
| 63 | GO:0009658: chloroplast organization | 1.22E-03 |
| 64 | GO:1900056: negative regulation of leaf senescence | 1.31E-03 |
| 65 | GO:0010050: vegetative phase change | 1.31E-03 |
| 66 | GO:0051510: regulation of unidimensional cell growth | 1.31E-03 |
| 67 | GO:0010038: response to metal ion | 1.31E-03 |
| 68 | GO:0006102: isocitrate metabolic process | 1.51E-03 |
| 69 | GO:0071482: cellular response to light stimulus | 1.72E-03 |
| 70 | GO:0009644: response to high light intensity | 1.83E-03 |
| 71 | GO:0005982: starch metabolic process | 2.18E-03 |
| 72 | GO:1900426: positive regulation of defense response to bacterium | 2.18E-03 |
| 73 | GO:0009638: phototropism | 2.18E-03 |
| 74 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.18E-03 |
| 75 | GO:0010267: production of ta-siRNAs involved in RNA interference | 2.18E-03 |
| 76 | GO:0045036: protein targeting to chloroplast | 2.41E-03 |
| 77 | GO:0009688: abscisic acid biosynthetic process | 2.41E-03 |
| 78 | GO:0006352: DNA-templated transcription, initiation | 2.66E-03 |
| 79 | GO:0006096: glycolytic process | 2.68E-03 |
| 80 | GO:0055114: oxidation-reduction process | 2.72E-03 |
| 81 | GO:0006790: sulfur compound metabolic process | 2.92E-03 |
| 82 | GO:0010075: regulation of meristem growth | 3.18E-03 |
| 83 | GO:0005986: sucrose biosynthetic process | 3.18E-03 |
| 84 | GO:0009785: blue light signaling pathway | 3.18E-03 |
| 85 | GO:0010020: chloroplast fission | 3.45E-03 |
| 86 | GO:0019253: reductive pentose-phosphate cycle | 3.45E-03 |
| 87 | GO:0010207: photosystem II assembly | 3.45E-03 |
| 88 | GO:0000162: tryptophan biosynthetic process | 4.02E-03 |
| 89 | GO:0010025: wax biosynthetic process | 4.02E-03 |
| 90 | GO:2000377: regulation of reactive oxygen species metabolic process | 4.31E-03 |
| 91 | GO:0006487: protein N-linked glycosylation | 4.31E-03 |
| 92 | GO:0006508: proteolysis | 4.35E-03 |
| 93 | GO:0051302: regulation of cell division | 4.61E-03 |
| 94 | GO:0016575: histone deacetylation | 4.61E-03 |
| 95 | GO:0007017: microtubule-based process | 4.61E-03 |
| 96 | GO:0010118: stomatal movement | 6.57E-03 |
| 97 | GO:0006662: glycerol ether metabolic process | 6.92E-03 |
| 98 | GO:0006814: sodium ion transport | 7.28E-03 |
| 99 | GO:0042752: regulation of circadian rhythm | 7.28E-03 |
| 100 | GO:0009646: response to absence of light | 7.28E-03 |
| 101 | GO:0009851: auxin biosynthetic process | 7.64E-03 |
| 102 | GO:0009791: post-embryonic development | 7.64E-03 |
| 103 | GO:0048825: cotyledon development | 7.64E-03 |
| 104 | GO:0000302: response to reactive oxygen species | 8.01E-03 |
| 105 | GO:0051607: defense response to virus | 9.96E-03 |
| 106 | GO:0016579: protein deubiquitination | 9.96E-03 |
| 107 | GO:0009816: defense response to bacterium, incompatible interaction | 1.08E-02 |
| 108 | GO:0042128: nitrate assimilation | 1.12E-02 |
| 109 | GO:0006974: cellular response to DNA damage stimulus | 1.12E-02 |
| 110 | GO:0015995: chlorophyll biosynthetic process | 1.16E-02 |
| 111 | GO:0006950: response to stress | 1.16E-02 |
| 112 | GO:0018298: protein-chromophore linkage | 1.25E-02 |
| 113 | GO:0006811: ion transport | 1.34E-02 |
| 114 | GO:0010218: response to far red light | 1.34E-02 |
| 115 | GO:0010043: response to zinc ion | 1.38E-02 |
| 116 | GO:0009910: negative regulation of flower development | 1.38E-02 |
| 117 | GO:0009637: response to blue light | 1.48E-02 |
| 118 | GO:0009853: photorespiration | 1.48E-02 |
| 119 | GO:0006099: tricarboxylic acid cycle | 1.52E-02 |
| 120 | GO:0034599: cellular response to oxidative stress | 1.52E-02 |
| 121 | GO:0010114: response to red light | 1.77E-02 |
| 122 | GO:0009640: photomorphogenesis | 1.77E-02 |
| 123 | GO:0009636: response to toxic substance | 1.92E-02 |
| 124 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.24E-02 |
| 125 | GO:0010224: response to UV-B | 2.24E-02 |
| 126 | GO:0048367: shoot system development | 2.52E-02 |
| 127 | GO:0009624: response to nematode | 2.81E-02 |
| 128 | GO:0009793: embryo development ending in seed dormancy | 3.78E-02 |
| 129 | GO:0016310: phosphorylation | 4.06E-02 |
| 130 | GO:0007623: circadian rhythm | 4.14E-02 |
| 131 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.28E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004592: pantoate-beta-alanine ligase activity | 0.00E+00 |
| 2 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
| 3 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 4 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 7 | GO:0051723: protein methylesterase activity | 0.00E+00 |
| 8 | GO:0008482: sulfite oxidase activity | 0.00E+00 |
| 9 | GO:0030941: chloroplast targeting sequence binding | 7.90E-05 |
| 10 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 7.90E-05 |
| 11 | GO:0004123: cystathionine gamma-lyase activity | 7.90E-05 |
| 12 | GO:0046906: tetrapyrrole binding | 7.90E-05 |
| 13 | GO:0033984: indole-3-glycerol-phosphate lyase activity | 7.90E-05 |
| 14 | GO:0004121: cystathionine beta-lyase activity | 7.90E-05 |
| 15 | GO:0051996: squalene synthase activity | 7.90E-05 |
| 16 | GO:0004856: xylulokinase activity | 7.90E-05 |
| 17 | GO:0016783: sulfurtransferase activity | 7.90E-05 |
| 18 | GO:0004618: phosphoglycerate kinase activity | 1.89E-04 |
| 19 | GO:0015929: hexosaminidase activity | 1.89E-04 |
| 20 | GO:0004563: beta-N-acetylhexosaminidase activity | 1.89E-04 |
| 21 | GO:0004046: aminoacylase activity | 1.89E-04 |
| 22 | GO:0015367: oxoglutarate:malate antiporter activity | 1.89E-04 |
| 23 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 1.89E-04 |
| 24 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.89E-04 |
| 25 | GO:0016491: oxidoreductase activity | 2.03E-04 |
| 26 | GO:0004180: carboxypeptidase activity | 3.17E-04 |
| 27 | GO:0046524: sucrose-phosphate synthase activity | 3.17E-04 |
| 28 | GO:0004848: ureidoglycolate hydrolase activity | 3.17E-04 |
| 29 | GO:0003962: cystathionine gamma-synthase activity | 3.17E-04 |
| 30 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 3.17E-04 |
| 31 | GO:0004416: hydroxyacylglutathione hydrolase activity | 4.58E-04 |
| 32 | GO:0015131: oxaloacetate transmembrane transporter activity | 4.58E-04 |
| 33 | GO:0004792: thiosulfate sulfurtransferase activity | 4.58E-04 |
| 34 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 4.58E-04 |
| 35 | GO:0009882: blue light photoreceptor activity | 4.58E-04 |
| 36 | GO:0048038: quinone binding | 5.76E-04 |
| 37 | GO:0001053: plastid sigma factor activity | 6.09E-04 |
| 38 | GO:0004834: tryptophan synthase activity | 6.09E-04 |
| 39 | GO:0051861: glycolipid binding | 6.09E-04 |
| 40 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 6.09E-04 |
| 41 | GO:0016987: sigma factor activity | 6.09E-04 |
| 42 | GO:0005313: L-glutamate transmembrane transporter activity | 6.09E-04 |
| 43 | GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity | 7.72E-04 |
| 44 | GO:0030151: molybdenum ion binding | 7.72E-04 |
| 45 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.72E-04 |
| 46 | GO:0000293: ferric-chelate reductase activity | 9.42E-04 |
| 47 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 9.42E-04 |
| 48 | GO:0004559: alpha-mannosidase activity | 1.12E-03 |
| 49 | GO:0016157: sucrose synthase activity | 1.12E-03 |
| 50 | GO:0015140: malate transmembrane transporter activity | 1.31E-03 |
| 51 | GO:0019899: enzyme binding | 1.31E-03 |
| 52 | GO:0004564: beta-fructofuranosidase activity | 1.51E-03 |
| 53 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.72E-03 |
| 54 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 1.95E-03 |
| 55 | GO:0071949: FAD binding | 1.95E-03 |
| 56 | GO:0004575: sucrose alpha-glucosidase activity | 2.18E-03 |
| 57 | GO:0008047: enzyme activator activity | 2.41E-03 |
| 58 | GO:0004177: aminopeptidase activity | 2.66E-03 |
| 59 | GO:0031072: heat shock protein binding | 3.18E-03 |
| 60 | GO:0004407: histone deacetylase activity | 4.31E-03 |
| 61 | GO:0004176: ATP-dependent peptidase activity | 4.92E-03 |
| 62 | GO:0047134: protein-disulfide reductase activity | 6.22E-03 |
| 63 | GO:0008080: N-acetyltransferase activity | 6.92E-03 |
| 64 | GO:0042802: identical protein binding | 7.02E-03 |
| 65 | GO:0004791: thioredoxin-disulfide reductase activity | 7.28E-03 |
| 66 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 8.01E-03 |
| 67 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.77E-03 |
| 68 | GO:0008483: transaminase activity | 9.56E-03 |
| 69 | GO:0008237: metallopeptidase activity | 9.56E-03 |
| 70 | GO:0008236: serine-type peptidase activity | 1.21E-02 |
| 71 | GO:0042803: protein homodimerization activity | 1.33E-02 |
| 72 | GO:0004222: metalloendopeptidase activity | 1.34E-02 |
| 73 | GO:0004364: glutathione transferase activity | 1.72E-02 |
| 74 | GO:0004185: serine-type carboxypeptidase activity | 1.77E-02 |
| 75 | GO:0051287: NAD binding | 2.02E-02 |
| 76 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.19E-02 |
| 77 | GO:0003777: microtubule motor activity | 2.35E-02 |
| 78 | GO:0022857: transmembrane transporter activity | 2.69E-02 |
| 79 | GO:0051082: unfolded protein binding | 2.81E-02 |
| 80 | GO:0015035: protein disulfide oxidoreductase activity | 2.87E-02 |
| 81 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.36E-02 |
| 82 | GO:0016829: lyase activity | 3.49E-02 |
| 83 | GO:0030170: pyridoxal phosphate binding | 3.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.76E-12 |
| 2 | GO:0031972: chloroplast intermembrane space | 7.90E-05 |
| 3 | GO:0080085: signal recognition particle, chloroplast targeting | 1.89E-04 |
| 4 | GO:0031969: chloroplast membrane | 2.24E-04 |
| 5 | GO:0005773: vacuole | 2.65E-04 |
| 6 | GO:0016605: PML body | 3.17E-04 |
| 7 | GO:0030286: dynein complex | 6.09E-04 |
| 8 | GO:0009517: PSII associated light-harvesting complex II | 6.09E-04 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 6.18E-04 |
| 10 | GO:0009707: chloroplast outer membrane | 1.06E-03 |
| 11 | GO:0005655: nucleolar ribonuclease P complex | 1.12E-03 |
| 12 | GO:0005829: cytosol | 1.19E-03 |
| 13 | GO:0031359: integral component of chloroplast outer membrane | 1.31E-03 |
| 14 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.72E-03 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.95E-03 |
| 16 | GO:0016604: nuclear body | 2.18E-03 |
| 17 | GO:0048471: perinuclear region of cytoplasm | 2.66E-03 |
| 18 | GO:0005875: microtubule associated complex | 4.02E-03 |
| 19 | GO:0009505: plant-type cell wall | 4.07E-03 |
| 20 | GO:0042651: thylakoid membrane | 4.61E-03 |
| 21 | GO:0045271: respiratory chain complex I | 4.61E-03 |
| 22 | GO:0009534: chloroplast thylakoid | 6.85E-03 |
| 23 | GO:0009941: chloroplast envelope | 9.12E-03 |
| 24 | GO:0005856: cytoskeleton | 1.92E-02 |
| 25 | GO:0031966: mitochondrial membrane | 2.08E-02 |
| 26 | GO:0005747: mitochondrial respiratory chain complex I | 2.52E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 2.81E-02 |
| 28 | GO:0010287: plastoglobule | 3.17E-02 |
| 29 | GO:0005737: cytoplasm | 3.19E-02 |
| 30 | GO:0005777: peroxisome | 3.20E-02 |
| 31 | GO:0005623: cell | 3.36E-02 |
| 32 | GO:0005759: mitochondrial matrix | 3.88E-02 |
| 33 | GO:0009570: chloroplast stroma | 4.80E-02 |
| 34 | GO:0005622: intracellular | 4.92E-02 |