co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018293: protein-FAD linkage	0.00E+00
2	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0017012: protein-phytochromobilin linkage	0.00E+00
5	GO:0010202: response to low fluence red light stimulus	0.00E+00
6	GO:0015746: citrate transport	0.00E+00
7	GO:0019566: arabinose metabolic process	0.00E+00
8	GO:0006721: terpenoid metabolic process	0.00E+00
9	GO:0042908: xenobiotic transport	0.00E+00
10	GO:0019388: galactose catabolic process	8.20E-07
11	GO:0009590: detection of gravity	7.24E-06
12	GO:0006006: glucose metabolic process	7.64E-06
13	GO:0009649: entrainment of circadian clock	1.36E-05
14	GO:0006520: cellular amino acid metabolic process	5.15E-05
15	GO:0005978: glycogen biosynthetic process	8.26E-05
16	GO:0035556: intracellular signal transduction	1.08E-04
17	GO:0006567: threonine catabolic process	1.27E-04
18	GO:0016487: farnesol metabolic process	1.27E-04
19	GO:0006007: glucose catabolic process	1.27E-04
20	GO:0031468: nuclear envelope reassembly	1.27E-04
21	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	1.27E-04
22	GO:0010265: SCF complex assembly	1.27E-04
23	GO:0048229: gametophyte development	2.14E-04
24	GO:0010343: singlet oxygen-mediated programmed cell death	2.94E-04
25	GO:0043255: regulation of carbohydrate biosynthetic process	2.94E-04
26	GO:2000030: regulation of response to red or far red light	2.94E-04
27	GO:0016560: protein import into peroxisome matrix, docking	2.94E-04
28	GO:0030010: establishment of cell polarity	2.94E-04
29	GO:0010617: circadian regulation of calcium ion oscillation	2.94E-04
30	GO:0019441: tryptophan catabolic process to kynurenine	2.94E-04
31	GO:0097054: L-glutamate biosynthetic process	2.94E-04
32	GO:0080183: response to photooxidative stress	2.94E-04
33	GO:0043100: pyrimidine nucleobase salvage	2.94E-04
34	GO:1901562: response to paraquat	4.86E-04
35	GO:0043617: cellular response to sucrose starvation	4.86E-04
36	GO:0015940: pantothenate biosynthetic process	4.86E-04
37	GO:0006760: folic acid-containing compound metabolic process	4.86E-04
38	GO:0016226: iron-sulfur cluster assembly	5.89E-04
39	GO:0009584: detection of visible light	6.95E-04
40	GO:0006537: glutamate biosynthetic process	6.95E-04
41	GO:0009647: skotomorphogenesis	6.95E-04
42	GO:0009399: nitrogen fixation	6.95E-04
43	GO:0010148: transpiration	6.95E-04
44	GO:0009963: positive regulation of flavonoid biosynthetic process	6.95E-04
45	GO:0015700: arsenite transport	6.95E-04
46	GO:0009687: abscisic acid metabolic process	9.21E-04
47	GO:0070534: protein K63-linked ubiquitination	9.21E-04
48	GO:0019676: ammonia assimilation cycle	9.21E-04
49	GO:0006545: glycine biosynthetic process	9.21E-04
50	GO:0015689: molybdate ion transport	9.21E-04
51	GO:0006221: pyrimidine nucleotide biosynthetic process	9.21E-04
52	GO:0006625: protein targeting to peroxisome	9.21E-04
53	GO:0044205: 'de novo' UMP biosynthetic process	9.21E-04
54	GO:0034613: cellular protein localization	9.21E-04
55	GO:0006542: glutamine biosynthetic process	9.21E-04
56	GO:0006646: phosphatidylethanolamine biosynthetic process	9.21E-04
57	GO:0019252: starch biosynthetic process	9.96E-04
58	GO:0000304: response to singlet oxygen	1.16E-03
59	GO:0046283: anthocyanin-containing compound metabolic process	1.16E-03
60	GO:0006301: postreplication repair	1.43E-03
61	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.43E-03
62	GO:0006555: methionine metabolic process	1.43E-03
63	GO:0070814: hydrogen sulfide biosynthetic process	1.43E-03
64	GO:0009117: nucleotide metabolic process	1.43E-03
65	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.43E-03
66	GO:0019509: L-methionine salvage from methylthioadenosine	1.71E-03
67	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.71E-03
68	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.71E-03
69	GO:0010374: stomatal complex development	2.01E-03
70	GO:0010161: red light signaling pathway	2.01E-03
71	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.01E-03
72	GO:0010044: response to aluminum ion	2.01E-03
73	GO:0048527: lateral root development	2.27E-03
74	GO:0009231: riboflavin biosynthetic process	2.32E-03
75	GO:0030091: protein repair	2.32E-03
76	GO:0006099: tricarboxylic acid cycle	2.59E-03
77	GO:0015996: chlorophyll catabolic process	2.65E-03
78	GO:0009880: embryonic pattern specification	2.65E-03
79	GO:0046685: response to arsenic-containing substance	3.00E-03
80	GO:0055114: oxidation-reduction process	3.14E-03
81	GO:0009640: photomorphogenesis	3.19E-03
82	GO:0006468: protein phosphorylation	3.31E-03
83	GO:0009638: phototropism	3.36E-03
84	GO:0009098: leucine biosynthetic process	3.36E-03
85	GO:0042761: very long-chain fatty acid biosynthetic process	3.36E-03
86	GO:0006855: drug transmembrane transport	3.71E-03
87	GO:0009641: shade avoidance	3.73E-03
88	GO:0009970: cellular response to sulfate starvation	3.73E-03
89	GO:0006325: chromatin organization	3.73E-03
90	GO:0000103: sulfate assimilation	3.73E-03
91	GO:0005975: carbohydrate metabolic process	3.97E-03
92	GO:0052544: defense response by callose deposition in cell wall	4.12E-03
93	GO:0006879: cellular iron ion homeostasis	4.12E-03
94	GO:0046686: response to cadmium ion	4.16E-03
95	GO:0009585: red, far-red light phototransduction	4.29E-03
96	GO:2000028: regulation of photoperiodism, flowering	4.93E-03
97	GO:0050826: response to freezing	4.93E-03
98	GO:0009266: response to temperature stimulus	5.36E-03
99	GO:0007031: peroxisome organization	5.80E-03
100	GO:0007030: Golgi organization	5.80E-03
101	GO:0019853: L-ascorbic acid biosynthetic process	5.80E-03
102	GO:0000162: tryptophan biosynthetic process	6.25E-03
103	GO:0008152: metabolic process	6.69E-03
104	GO:0006487: protein N-linked glycosylation	6.71E-03
105	GO:0061077: chaperone-mediated protein folding	7.68E-03
106	GO:0009058: biosynthetic process	8.04E-03
107	GO:0031348: negative regulation of defense response	8.18E-03
108	GO:0006012: galactose metabolic process	8.69E-03
109	GO:0009693: ethylene biosynthetic process	8.69E-03
110	GO:0010118: stomatal movement	1.03E-02
111	GO:0015991: ATP hydrolysis coupled proton transport	1.03E-02
112	GO:0042391: regulation of membrane potential	1.03E-02
113	GO:0080022: primary root development	1.03E-02
114	GO:0010051: xylem and phloem pattern formation	1.03E-02
115	GO:0009646: response to absence of light	1.14E-02
116	GO:0061025: membrane fusion	1.14E-02
117	GO:0008654: phospholipid biosynthetic process	1.20E-02
118	GO:0009409: response to cold	1.22E-02
119	GO:0009630: gravitropism	1.32E-02
120	GO:0019761: glucosinolate biosynthetic process	1.32E-02
121	GO:1901657: glycosyl compound metabolic process	1.38E-02
122	GO:0006464: cellular protein modification process	1.44E-02
123	GO:0009826: unidimensional cell growth	1.57E-02
124	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.70E-02
125	GO:0010029: regulation of seed germination	1.70E-02
126	GO:0009816: defense response to bacterium, incompatible interaction	1.70E-02
127	GO:0006970: response to osmotic stress	1.76E-02
128	GO:0042128: nitrate assimilation	1.77E-02
129	GO:0048573: photoperiodism, flowering	1.83E-02
130	GO:0018298: protein-chromophore linkage	1.97E-02
131	GO:0080167: response to karrikin	2.03E-02
132	GO:0009407: toxin catabolic process	2.11E-02
133	GO:0010218: response to far red light	2.11E-02
134	GO:0010043: response to zinc ion	2.19E-02
135	GO:0010119: regulation of stomatal movement	2.19E-02
136	GO:0009867: jasmonic acid mediated signaling pathway	2.33E-02
137	GO:0045892: negative regulation of transcription, DNA-templated	2.47E-02
138	GO:0009744: response to sucrose	2.80E-02
139	GO:0006629: lipid metabolic process	2.99E-02
140	GO:0009408: response to heat	2.99E-02
141	GO:0009636: response to toxic substance	3.04E-02
142	GO:0031347: regulation of defense response	3.20E-02
143	GO:0009809: lignin biosynthetic process	3.46E-02
144	GO:0009736: cytokinin-activated signaling pathway	3.46E-02
145	GO:0010224: response to UV-B	3.54E-02
146	GO:0006096: glycolytic process	3.89E-02
147	GO:0006508: proteolysis	4.11E-02
148	GO:0009620: response to fungus	4.16E-02
149	GO:0018105: peptidyl-serine phosphorylation	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
2	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
5	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
6	GO:0015930: glutamate synthase activity	0.00E+00
7	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
8	GO:0009702: L-arabinokinase activity	0.00E+00
9	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
10	GO:0031517: red light photoreceptor activity	0.00E+00
11	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
12	GO:0004151: dihydroorotase activity	0.00E+00
13	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
14	GO:0047886: farnesol dehydrogenase activity	0.00E+00
15	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
16	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
17	GO:0042030: ATPase inhibitor activity	0.00E+00
18	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
19	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
20	GO:0004614: phosphoglucomutase activity	8.20E-07
21	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.36E-05
22	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.27E-04
23	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.27E-04
24	GO:0080048: GDP-D-glucose phosphorylase activity	1.27E-04
25	GO:0046480: galactolipid galactosyltransferase activity	1.27E-04
26	GO:0015137: citrate transmembrane transporter activity	1.27E-04
27	GO:0080079: cellobiose glucosidase activity	1.27E-04
28	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.27E-04
29	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.27E-04
30	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.27E-04
31	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	1.27E-04
32	GO:0080047: GDP-L-galactose phosphorylase activity	1.27E-04
33	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.27E-04
34	GO:0004048: anthranilate phosphoribosyltransferase activity	1.27E-04
35	GO:1990841: promoter-specific chromatin binding	1.27E-04
36	GO:0004793: threonine aldolase activity	1.27E-04
37	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.27E-04
38	GO:0071992: phytochelatin transmembrane transporter activity	1.27E-04
39	GO:0004307: ethanolaminephosphotransferase activity	1.27E-04
40	GO:0008732: L-allo-threonine aldolase activity	1.27E-04
41	GO:0016041: glutamate synthase (ferredoxin) activity	1.27E-04
42	GO:0031516: far-red light photoreceptor activity	1.27E-04
43	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	1.27E-04
44	GO:0016868: intramolecular transferase activity, phosphotransferases	2.94E-04
45	GO:0009883: red or far-red light photoreceptor activity	2.94E-04
46	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.94E-04
47	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.94E-04
48	GO:0030572: phosphatidyltransferase activity	2.94E-04
49	GO:0004142: diacylglycerol cholinephosphotransferase activity	2.94E-04
50	GO:0004061: arylformamidase activity	2.94E-04
51	GO:0052692: raffinose alpha-galactosidase activity	4.86E-04
52	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.86E-04
53	GO:0032947: protein complex scaffold	4.86E-04
54	GO:0004557: alpha-galactosidase activity	4.86E-04
55	GO:0003861: 3-isopropylmalate dehydratase activity	4.86E-04
56	GO:0003935: GTP cyclohydrolase II activity	4.86E-04
57	GO:0008020: G-protein coupled photoreceptor activity	4.86E-04
58	GO:0004781: sulfate adenylyltransferase (ATP) activity	4.86E-04
59	GO:0035529: NADH pyrophosphatase activity	6.95E-04
60	GO:0008106: alcohol dehydrogenase (NADP+) activity	6.95E-04
61	GO:0016656: monodehydroascorbate reductase (NADH) activity	6.95E-04
62	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	6.95E-04
63	GO:0015098: molybdate ion transmembrane transporter activity	9.21E-04
64	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	9.21E-04
65	GO:0004335: galactokinase activity	9.21E-04
66	GO:0004672: protein kinase activity	9.79E-04
67	GO:0016407: acetyltransferase activity	1.16E-03
68	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.16E-03
69	GO:0051538: 3 iron, 4 sulfur cluster binding	1.16E-03
70	GO:0004356: glutamate-ammonia ligase activity	1.16E-03
71	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.43E-03
72	GO:0051117: ATPase binding	1.43E-03
73	GO:0016597: amino acid binding	1.43E-03
74	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.43E-03
75	GO:0070300: phosphatidic acid binding	1.71E-03
76	GO:0005261: cation channel activity	1.71E-03
77	GO:0008236: serine-type peptidase activity	1.87E-03
78	GO:0005085: guanyl-nucleotide exchange factor activity	2.01E-03
79	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.32E-03
80	GO:0004034: aldose 1-epimerase activity	2.32E-03
81	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.00E-03
82	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.00E-03
83	GO:0016491: oxidoreductase activity	3.09E-03
84	GO:0004673: protein histidine kinase activity	3.73E-03
85	GO:0005524: ATP binding	3.87E-03
86	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.12E-03
87	GO:0008559: xenobiotic-transporting ATPase activity	4.12E-03
88	GO:0008378: galactosyltransferase activity	4.52E-03
89	GO:0000155: phosphorelay sensor kinase activity	4.93E-03
90	GO:0030552: cAMP binding	5.80E-03
91	GO:0030553: cGMP binding	5.80E-03
92	GO:0051536: iron-sulfur cluster binding	6.71E-03
93	GO:0043130: ubiquitin binding	6.71E-03
94	GO:0005528: FK506 binding	6.71E-03
95	GO:0005216: ion channel activity	7.19E-03
96	GO:0004176: ATP-dependent peptidase activity	7.68E-03
97	GO:0016829: lyase activity	8.25E-03
98	GO:0030170: pyridoxal phosphate binding	8.46E-03
99	GO:0005102: receptor binding	9.75E-03
100	GO:0005249: voltage-gated potassium channel activity	1.03E-02
101	GO:0030551: cyclic nucleotide binding	1.03E-02
102	GO:0004674: protein serine/threonine kinase activity	1.05E-02
103	GO:0016853: isomerase activity	1.14E-02
104	GO:0050662: coenzyme binding	1.14E-02
105	GO:0048038: quinone binding	1.26E-02
106	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.26E-02
107	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.34E-02
108	GO:0042802: identical protein binding	1.34E-02
109	GO:0008483: transaminase activity	1.50E-02
110	GO:0008237: metallopeptidase activity	1.50E-02
111	GO:0000287: magnesium ion binding	1.60E-02
112	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.77E-02
113	GO:0004683: calmodulin-dependent protein kinase activity	1.83E-02
114	GO:0030247: polysaccharide binding	1.83E-02
115	GO:0015238: drug transmembrane transporter activity	2.04E-02
116	GO:0005516: calmodulin binding	2.06E-02
117	GO:0005515: protein binding	2.08E-02
118	GO:0004222: metalloendopeptidase activity	2.11E-02
119	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.11E-02
120	GO:0030145: manganese ion binding	2.19E-02
121	GO:0050897: cobalt ion binding	2.19E-02
122	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.33E-02
123	GO:0016787: hydrolase activity	2.43E-02
124	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.48E-02
125	GO:0008422: beta-glucosidase activity	2.48E-02
126	GO:0004871: signal transducer activity	2.55E-02
127	GO:0051539: 4 iron, 4 sulfur cluster binding	2.56E-02
128	GO:0046872: metal ion binding	2.57E-02
129	GO:0005509: calcium ion binding	2.70E-02
130	GO:0004364: glutathione transferase activity	2.72E-02
131	GO:0004185: serine-type carboxypeptidase activity	2.80E-02
132	GO:0005506: iron ion binding	2.92E-02
133	GO:0005198: structural molecule activity	3.04E-02
134	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.12E-02
135	GO:0016298: lipase activity	3.54E-02
136	GO:0031625: ubiquitin protein ligase binding	3.72E-02
137	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.98E-02
138	GO:0022857: transmembrane transporter activity	4.26E-02
139	GO:0051082: unfolded protein binding	4.44E-02
140	GO:0016887: ATPase activity	4.62E-02
141	GO:0004386: helicase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
2	GO:0005829: cytosol	1.46E-08
3	GO:0005773: vacuole	2.50E-05
4	GO:0010319: stromule	1.04E-04
5	GO:0000152: nuclear ubiquitin ligase complex	1.27E-04
6	GO:1990429: peroxisomal importomer complex	1.27E-04
7	GO:0009507: chloroplast	1.46E-04
8	GO:0009536: plastid	1.50E-04
9	GO:0016604: nuclear body	1.54E-04
10	GO:0009570: chloroplast stroma	2.30E-04
11	GO:0031372: UBC13-MMS2 complex	9.21E-04
12	GO:0009526: plastid envelope	9.21E-04
13	GO:0005746: mitochondrial respiratory chain	1.16E-03
14	GO:0005778: peroxisomal membrane	1.35E-03
15	GO:0005759: mitochondrial matrix	1.41E-03
16	GO:0031463: Cul3-RING ubiquitin ligase complex	1.43E-03
17	GO:0031359: integral component of chloroplast outer membrane	2.01E-03
18	GO:0000325: plant-type vacuole	2.27E-03
19	GO:0009501: amyloplast	2.32E-03
20	GO:0045273: respiratory chain complex II	2.32E-03
21	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.32E-03
22	GO:0005783: endoplasmic reticulum	2.60E-03
23	GO:0005737: cytoplasm	2.93E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.00E-03
25	GO:0009941: chloroplast envelope	3.17E-03
26	GO:0048471: perinuclear region of cytoplasm	4.12E-03
27	GO:0005747: mitochondrial respiratory chain complex I	5.22E-03
28	GO:0016607: nuclear speck	5.22E-03
29	GO:0005774: vacuolar membrane	5.30E-03
30	GO:0005764: lysosome	5.36E-03
31	GO:0005750: mitochondrial respiratory chain complex III	5.36E-03
32	GO:0005758: mitochondrial intermembrane space	6.71E-03
33	GO:0042651: thylakoid membrane	7.19E-03
34	GO:0048046: apoplast	1.81E-02
35	GO:0009707: chloroplast outer membrane	1.97E-02
36	GO:0009535: chloroplast thylakoid membrane	2.59E-02
37	GO:0005739: mitochondrion	2.79E-02
38	GO:0005886: plasma membrane	2.90E-02
39	GO:0009505: plant-type cell wall	3.94E-02