GO Enrichment Analysis of Co-expressed Genes with
AT3G11945
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 6 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 7 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 8 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 9 | GO:0015979: photosynthesis | 2.71E-13 |
| 10 | GO:0010196: nonphotochemical quenching | 3.12E-07 |
| 11 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.96E-07 |
| 12 | GO:0032544: plastid translation | 7.15E-07 |
| 13 | GO:0006000: fructose metabolic process | 1.89E-06 |
| 14 | GO:0009773: photosynthetic electron transport in photosystem I | 2.48E-06 |
| 15 | GO:0018298: protein-chromophore linkage | 3.98E-06 |
| 16 | GO:0006094: gluconeogenesis | 4.03E-06 |
| 17 | GO:0010207: photosystem II assembly | 5.01E-06 |
| 18 | GO:0006109: regulation of carbohydrate metabolic process | 8.50E-06 |
| 19 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.06E-05 |
| 20 | GO:0016117: carotenoid biosynthetic process | 2.24E-05 |
| 21 | GO:1901259: chloroplast rRNA processing | 3.05E-05 |
| 22 | GO:0055114: oxidation-reduction process | 3.23E-05 |
| 23 | GO:0006002: fructose 6-phosphate metabolic process | 6.86E-05 |
| 24 | GO:0009409: response to cold | 7.09E-05 |
| 25 | GO:0010027: thylakoid membrane organization | 7.16E-05 |
| 26 | GO:0010206: photosystem II repair | 8.49E-05 |
| 27 | GO:0043007: maintenance of rDNA | 9.69E-05 |
| 28 | GO:1902458: positive regulation of stomatal opening | 9.69E-05 |
| 29 | GO:0034337: RNA folding | 9.69E-05 |
| 30 | GO:0006438: valyl-tRNA aminoacylation | 9.69E-05 |
| 31 | GO:0010205: photoinhibition | 1.03E-04 |
| 32 | GO:0043085: positive regulation of catalytic activity | 1.44E-04 |
| 33 | GO:0005983: starch catabolic process | 1.68E-04 |
| 34 | GO:0045037: protein import into chloroplast stroma | 1.68E-04 |
| 35 | GO:0005986: sucrose biosynthetic process | 1.93E-04 |
| 36 | GO:0042742: defense response to bacterium | 2.03E-04 |
| 37 | GO:0097054: L-glutamate biosynthetic process | 2.28E-04 |
| 38 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.28E-04 |
| 39 | GO:0035304: regulation of protein dephosphorylation | 2.28E-04 |
| 40 | GO:0009644: response to high light intensity | 2.39E-04 |
| 41 | GO:0071492: cellular response to UV-A | 3.80E-04 |
| 42 | GO:0016050: vesicle organization | 3.80E-04 |
| 43 | GO:0048281: inflorescence morphogenesis | 3.80E-04 |
| 44 | GO:0090391: granum assembly | 3.80E-04 |
| 45 | GO:0045454: cell redox homeostasis | 4.62E-04 |
| 46 | GO:0010148: transpiration | 5.46E-04 |
| 47 | GO:0006537: glutamate biosynthetic process | 5.46E-04 |
| 48 | GO:0006662: glycerol ether metabolic process | 6.09E-04 |
| 49 | GO:0010021: amylopectin biosynthetic process | 7.26E-04 |
| 50 | GO:0019676: ammonia assimilation cycle | 7.26E-04 |
| 51 | GO:0071486: cellular response to high light intensity | 7.26E-04 |
| 52 | GO:0045727: positive regulation of translation | 7.26E-04 |
| 53 | GO:0015994: chlorophyll metabolic process | 7.26E-04 |
| 54 | GO:0006552: leucine catabolic process | 7.26E-04 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.17E-04 |
| 56 | GO:0016123: xanthophyll biosynthetic process | 9.17E-04 |
| 57 | GO:0016120: carotene biosynthetic process | 9.17E-04 |
| 58 | GO:0006979: response to oxidative stress | 1.00E-03 |
| 59 | GO:0009635: response to herbicide | 1.12E-03 |
| 60 | GO:0042549: photosystem II stabilization | 1.12E-03 |
| 61 | GO:0015995: chlorophyll biosynthetic process | 1.24E-03 |
| 62 | GO:0016311: dephosphorylation | 1.30E-03 |
| 63 | GO:0009955: adaxial/abaxial pattern specification | 1.34E-03 |
| 64 | GO:0022904: respiratory electron transport chain | 1.57E-03 |
| 65 | GO:0010103: stomatal complex morphogenesis | 1.57E-03 |
| 66 | GO:0071446: cellular response to salicylic acid stimulus | 1.57E-03 |
| 67 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.57E-03 |
| 68 | GO:0070370: cellular heat acclimation | 1.57E-03 |
| 69 | GO:0009645: response to low light intensity stimulus | 1.57E-03 |
| 70 | GO:0009658: chloroplast organization | 1.71E-03 |
| 71 | GO:0034599: cellular response to oxidative stress | 1.80E-03 |
| 72 | GO:2000070: regulation of response to water deprivation | 1.81E-03 |
| 73 | GO:0009231: riboflavin biosynthetic process | 1.81E-03 |
| 74 | GO:0005978: glycogen biosynthetic process | 1.81E-03 |
| 75 | GO:0009642: response to light intensity | 1.81E-03 |
| 76 | GO:0030091: protein repair | 1.81E-03 |
| 77 | GO:0006526: arginine biosynthetic process | 2.07E-03 |
| 78 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 2.07E-03 |
| 79 | GO:0015996: chlorophyll catabolic process | 2.07E-03 |
| 80 | GO:0007186: G-protein coupled receptor signaling pathway | 2.07E-03 |
| 81 | GO:0001558: regulation of cell growth | 2.07E-03 |
| 82 | GO:0006098: pentose-phosphate shunt | 2.33E-03 |
| 83 | GO:0005982: starch metabolic process | 2.61E-03 |
| 84 | GO:0048829: root cap development | 2.90E-03 |
| 85 | GO:0000272: polysaccharide catabolic process | 3.20E-03 |
| 86 | GO:0009750: response to fructose | 3.20E-03 |
| 87 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.20E-03 |
| 88 | GO:0019684: photosynthesis, light reaction | 3.20E-03 |
| 89 | GO:0009073: aromatic amino acid family biosynthetic process | 3.20E-03 |
| 90 | GO:0006096: glycolytic process | 3.50E-03 |
| 91 | GO:0043086: negative regulation of catalytic activity | 3.50E-03 |
| 92 | GO:0009767: photosynthetic electron transport chain | 3.82E-03 |
| 93 | GO:0010628: positive regulation of gene expression | 3.82E-03 |
| 94 | GO:0010020: chloroplast fission | 4.15E-03 |
| 95 | GO:0019253: reductive pentose-phosphate cycle | 4.15E-03 |
| 96 | GO:0005985: sucrose metabolic process | 4.49E-03 |
| 97 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.83E-03 |
| 98 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.19E-03 |
| 99 | GO:0051302: regulation of cell division | 5.55E-03 |
| 100 | GO:0006418: tRNA aminoacylation for protein translation | 5.55E-03 |
| 101 | GO:0006412: translation | 5.61E-03 |
| 102 | GO:0061077: chaperone-mediated protein folding | 5.93E-03 |
| 103 | GO:0001944: vasculature development | 6.70E-03 |
| 104 | GO:0009735: response to cytokinin | 6.79E-03 |
| 105 | GO:0042631: cellular response to water deprivation | 7.93E-03 |
| 106 | GO:0010182: sugar mediated signaling pathway | 8.35E-03 |
| 107 | GO:0006520: cellular amino acid metabolic process | 8.35E-03 |
| 108 | GO:0009646: response to absence of light | 8.79E-03 |
| 109 | GO:0019252: starch biosynthetic process | 9.23E-03 |
| 110 | GO:0071554: cell wall organization or biogenesis | 9.68E-03 |
| 111 | GO:0009817: defense response to fungus, incompatible interaction | 1.51E-02 |
| 112 | GO:0009834: plant-type secondary cell wall biogenesis | 1.62E-02 |
| 113 | GO:0010119: regulation of stomatal movement | 1.68E-02 |
| 114 | GO:0009853: photorespiration | 1.79E-02 |
| 115 | GO:0009867: jasmonic acid mediated signaling pathway | 1.79E-02 |
| 116 | GO:0006281: DNA repair | 2.06E-02 |
| 117 | GO:0009744: response to sucrose | 2.14E-02 |
| 118 | GO:0009965: leaf morphogenesis | 2.33E-02 |
| 119 | GO:0031347: regulation of defense response | 2.46E-02 |
| 120 | GO:0009664: plant-type cell wall organization | 2.52E-02 |
| 121 | GO:0006364: rRNA processing | 2.65E-02 |
| 122 | GO:0006810: transport | 3.02E-02 |
| 123 | GO:0046686: response to cadmium ion | 3.24E-02 |
| 124 | GO:0009611: response to wounding | 3.73E-02 |
| 125 | GO:0045893: positive regulation of transcription, DNA-templated | 4.19E-02 |
| 126 | GO:0009790: embryo development | 4.46E-02 |
| 127 | GO:0006633: fatty acid biosynthetic process | 4.70E-02 |
| 128 | GO:0009737: response to abscisic acid | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 2 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 3 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 6 | GO:0016166: phytoene dehydrogenase activity | 0.00E+00 |
| 7 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 8 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 9 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 10 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.96E-07 |
| 11 | GO:0016168: chlorophyll binding | 2.51E-06 |
| 12 | GO:0019843: rRNA binding | 3.46E-06 |
| 13 | GO:0031409: pigment binding | 7.47E-06 |
| 14 | GO:0004832: valine-tRNA ligase activity | 9.69E-05 |
| 15 | GO:0016041: glutamate synthase (ferredoxin) activity | 9.69E-05 |
| 16 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 9.69E-05 |
| 17 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 9.69E-05 |
| 18 | GO:0050308: sugar-phosphatase activity | 9.69E-05 |
| 19 | GO:0010242: oxygen evolving activity | 9.69E-05 |
| 20 | GO:0045485: omega-6 fatty acid desaturase activity | 9.69E-05 |
| 21 | GO:0019203: carbohydrate phosphatase activity | 9.69E-05 |
| 22 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 9.69E-05 |
| 23 | GO:0008047: enzyme activator activity | 1.23E-04 |
| 24 | GO:0008266: poly(U) RNA binding | 2.19E-04 |
| 25 | GO:0010291: carotene beta-ring hydroxylase activity | 2.28E-04 |
| 26 | GO:0047746: chlorophyllase activity | 2.28E-04 |
| 27 | GO:0010297: heteropolysaccharide binding | 2.28E-04 |
| 28 | GO:0008967: phosphoglycolate phosphatase activity | 2.28E-04 |
| 29 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 2.28E-04 |
| 30 | GO:0004857: enzyme inhibitor activity | 3.08E-04 |
| 31 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.80E-04 |
| 32 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.80E-04 |
| 33 | GO:0043169: cation binding | 3.80E-04 |
| 34 | GO:0003913: DNA photolyase activity | 3.80E-04 |
| 35 | GO:0047134: protein-disulfide reductase activity | 5.25E-04 |
| 36 | GO:0043023: ribosomal large subunit binding | 5.46E-04 |
| 37 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 5.46E-04 |
| 38 | GO:0004791: thioredoxin-disulfide reductase activity | 6.54E-04 |
| 39 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 6.92E-04 |
| 40 | GO:0042277: peptide binding | 7.26E-04 |
| 41 | GO:0019199: transmembrane receptor protein kinase activity | 7.26E-04 |
| 42 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.45E-04 |
| 43 | GO:0051538: 3 iron, 4 sulfur cluster binding | 9.17E-04 |
| 44 | GO:0004040: amidase activity | 9.17E-04 |
| 45 | GO:0003959: NADPH dehydrogenase activity | 9.17E-04 |
| 46 | GO:2001070: starch binding | 1.12E-03 |
| 47 | GO:0004332: fructose-bisphosphate aldolase activity | 1.12E-03 |
| 48 | GO:0051920: peroxiredoxin activity | 1.34E-03 |
| 49 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.34E-03 |
| 50 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.34E-03 |
| 51 | GO:0009881: photoreceptor activity | 1.57E-03 |
| 52 | GO:0016491: oxidoreductase activity | 1.59E-03 |
| 53 | GO:0016209: antioxidant activity | 1.81E-03 |
| 54 | GO:0004033: aldo-keto reductase (NADP) activity | 1.81E-03 |
| 55 | GO:0071949: FAD binding | 2.33E-03 |
| 56 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.33E-03 |
| 57 | GO:0005198: structural molecule activity | 2.48E-03 |
| 58 | GO:0031072: heat shock protein binding | 3.82E-03 |
| 59 | GO:0005509: calcium ion binding | 3.87E-03 |
| 60 | GO:0009055: electron carrier activity | 4.02E-03 |
| 61 | GO:0015035: protein disulfide oxidoreductase activity | 4.33E-03 |
| 62 | GO:0005528: FK506 binding | 5.19E-03 |
| 63 | GO:0022891: substrate-specific transmembrane transporter activity | 6.70E-03 |
| 64 | GO:0003756: protein disulfide isomerase activity | 7.10E-03 |
| 65 | GO:0004812: aminoacyl-tRNA ligase activity | 7.51E-03 |
| 66 | GO:0050662: coenzyme binding | 8.79E-03 |
| 67 | GO:0042802: identical protein binding | 9.20E-03 |
| 68 | GO:0005515: protein binding | 1.13E-02 |
| 69 | GO:0016413: O-acetyltransferase activity | 1.20E-02 |
| 70 | GO:0003735: structural constituent of ribosome | 1.24E-02 |
| 71 | GO:0004497: monooxygenase activity | 1.39E-02 |
| 72 | GO:0003746: translation elongation factor activity | 1.79E-02 |
| 73 | GO:0003993: acid phosphatase activity | 1.85E-02 |
| 74 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.96E-02 |
| 75 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.39E-02 |
| 76 | GO:0051287: NAD binding | 2.46E-02 |
| 77 | GO:0020037: heme binding | 3.30E-02 |
| 78 | GO:0051082: unfolded protein binding | 3.41E-02 |
| 79 | GO:0008565: protein transporter activity | 4.54E-02 |
| 80 | GO:0046872: metal ion binding | 4.70E-02 |
| 81 | GO:0016787: hydrolase activity | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 2 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
| 3 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 2.65E-46 |
| 5 | GO:0009534: chloroplast thylakoid | 2.01E-42 |
| 6 | GO:0009570: chloroplast stroma | 1.27E-31 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.21E-24 |
| 8 | GO:0009941: chloroplast envelope | 1.06E-23 |
| 9 | GO:0009579: thylakoid | 1.12E-19 |
| 10 | GO:0010287: plastoglobule | 6.59E-11 |
| 11 | GO:0031977: thylakoid lumen | 9.51E-11 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 3.44E-09 |
| 13 | GO:0010319: stromule | 2.95E-08 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.46E-07 |
| 15 | GO:0019898: extrinsic component of membrane | 8.20E-07 |
| 16 | GO:0030095: chloroplast photosystem II | 5.01E-06 |
| 17 | GO:0042651: thylakoid membrane | 1.06E-05 |
| 18 | GO:0009522: photosystem I | 3.24E-05 |
| 19 | GO:0048046: apoplast | 4.06E-05 |
| 20 | GO:0009706: chloroplast inner membrane | 4.23E-05 |
| 21 | GO:0009515: granal stacked thylakoid | 9.69E-05 |
| 22 | GO:0009782: photosystem I antenna complex | 9.69E-05 |
| 23 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 9.69E-05 |
| 24 | GO:0009783: photosystem II antenna complex | 9.69E-05 |
| 25 | GO:0005840: ribosome | 2.25E-04 |
| 26 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.28E-04 |
| 27 | GO:0030076: light-harvesting complex | 2.48E-04 |
| 28 | GO:0031969: chloroplast membrane | 3.48E-04 |
| 29 | GO:0009532: plastid stroma | 3.74E-04 |
| 30 | GO:0009528: plastid inner membrane | 3.80E-04 |
| 31 | GO:0009509: chromoplast | 3.80E-04 |
| 32 | GO:0009523: photosystem II | 6.99E-04 |
| 33 | GO:0009527: plastid outer membrane | 7.26E-04 |
| 34 | GO:0055035: plastid thylakoid membrane | 9.17E-04 |
| 35 | GO:0031305: integral component of mitochondrial inner membrane | 1.81E-03 |
| 36 | GO:0009501: amyloplast | 1.81E-03 |
| 37 | GO:0009538: photosystem I reaction center | 1.81E-03 |
| 38 | GO:0005763: mitochondrial small ribosomal subunit | 2.33E-03 |
| 39 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.33E-03 |
| 40 | GO:0005740: mitochondrial envelope | 2.90E-03 |
| 41 | GO:0032040: small-subunit processome | 3.50E-03 |
| 42 | GO:0009508: plastid chromosome | 3.82E-03 |
| 43 | GO:0005623: cell | 5.39E-03 |
| 44 | GO:0015935: small ribosomal subunit | 5.93E-03 |
| 45 | GO:0016020: membrane | 1.16E-02 |
| 46 | GO:0009295: nucleoid | 1.16E-02 |
| 47 | GO:0009707: chloroplast outer membrane | 1.51E-02 |
| 48 | GO:0015934: large ribosomal subunit | 1.68E-02 |
| 49 | GO:0016021: integral component of membrane | 1.75E-02 |
| 50 | GO:0005759: mitochondrial matrix | 4.70E-02 |