Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G11900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010243: response to organonitrogen compound0.00E+00
2GO:0042754: negative regulation of circadian rhythm5.03E-08
3GO:0071483: cellular response to blue light9.35E-07
4GO:0010100: negative regulation of photomorphogenesis8.96E-06
5GO:0048574: long-day photoperiodism, flowering8.96E-06
6GO:0043496: regulation of protein homodimerization activity6.72E-05
7GO:0007623: circadian rhythm1.07E-04
8GO:2001141: regulation of RNA biosynthetic process1.76E-04
9GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.76E-04
10GO:0010021: amylopectin biosynthetic process2.39E-04
11GO:0010189: vitamin E biosynthetic process4.53E-04
12GO:0070370: cellular heat acclimation5.30E-04
13GO:0009909: regulation of flower development6.45E-04
14GO:0009835: fruit ripening7.80E-04
15GO:0006352: DNA-templated transcription, initiation1.05E-03
16GO:0045893: positive regulation of transcription, DNA-templated1.07E-03
17GO:0009785: blue light signaling pathway1.25E-03
18GO:0010207: photosystem II assembly1.35E-03
19GO:0009739: response to gibberellin1.53E-03
20GO:0006071: glycerol metabolic process1.56E-03
21GO:0031408: oxylipin biosynthetic process1.90E-03
22GO:0010017: red or far-red light signaling pathway2.02E-03
23GO:0009658: chloroplast organization2.11E-03
24GO:0009723: response to ethylene2.43E-03
25GO:0010182: sugar mediated signaling pathway2.65E-03
26GO:0009741: response to brassinosteroid2.65E-03
27GO:0042752: regulation of circadian rhythm2.78E-03
28GO:0019252: starch biosynthetic process2.91E-03
29GO:0045892: negative regulation of transcription, DNA-templated3.15E-03
30GO:0009751: response to salicylic acid3.76E-03
31GO:0016126: sterol biosynthetic process3.91E-03
32GO:0009753: response to jasmonic acid4.09E-03
33GO:0042128: nitrate assimilation4.22E-03
34GO:0015995: chlorophyll biosynthetic process4.37E-03
35GO:0018298: protein-chromophore linkage4.69E-03
36GO:0010218: response to far red light5.02E-03
37GO:0009637: response to blue light5.52E-03
38GO:0010114: response to red light6.57E-03
39GO:0009640: photomorphogenesis6.57E-03
40GO:0006855: drug transmembrane transport7.31E-03
41GO:0010224: response to UV-B8.28E-03
42GO:0006857: oligopeptide transport8.48E-03
43GO:0009651: response to salt stress1.00E-02
44GO:0009624: response to nematode1.03E-02
45GO:0009733: response to auxin1.54E-02
46GO:0006355: regulation of transcription, DNA-templated1.59E-02
47GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.65E-02
48GO:0010468: regulation of gene expression1.73E-02
49GO:0009409: response to cold1.86E-02
50GO:0006351: transcription, DNA-templated1.91E-02
51GO:0046686: response to cadmium ion2.14E-02
52GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.48E-02
53GO:0010200: response to chitin2.48E-02
54GO:0009737: response to abscisic acid2.92E-02
55GO:0032259: methylation3.10E-02
56GO:0006281: DNA repair3.19E-02
57GO:0009908: flower development4.47E-02
58GO:0035556: intracellular signal transduction4.99E-02
RankGO TermAdjusted P value
1GO:0050342: tocopherol O-methyltransferase activity0.00E+00
2GO:0000989: transcription factor activity, transcription factor binding1.14E-05
3GO:0019904: protein domain specific binding2.07E-05
4GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.64E-05
5GO:0033201: alpha-1,4-glucan synthase activity6.72E-05
6GO:0003988: acetyl-CoA C-acyltransferase activity6.72E-05
7GO:0004373: glycogen (starch) synthase activity1.18E-04
8GO:0003913: DNA photolyase activity1.18E-04
9GO:0009011: starch synthase activity2.39E-04
10GO:0001053: plastid sigma factor activity2.39E-04
11GO:0016987: sigma factor activity2.39E-04
12GO:0004506: squalene monooxygenase activity2.39E-04
13GO:0004709: MAP kinase kinase kinase activity3.78E-04
14GO:0009881: photoreceptor activity5.30E-04
15GO:0030674: protein binding, bridging6.10E-04
16GO:0008889: glycerophosphodiester phosphodiesterase activity7.80E-04
17GO:0003700: transcription factor activity, sequence-specific DNA binding2.04E-03
18GO:0005215: transporter activity2.46E-03
19GO:0004527: exonuclease activity2.65E-03
20GO:0010181: FMN binding2.78E-03
21GO:0015238: drug transmembrane transporter activity4.85E-03
22GO:0004712: protein serine/threonine/tyrosine kinase activity5.86E-03
23GO:0015293: symporter activity7.12E-03
24GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.08E-03
25GO:0008270: zinc ion binding1.36E-02
26GO:0015297: antiporter activity1.47E-02
27GO:0016491: oxidoreductase activity1.80E-02
28GO:0004672: protein kinase activity2.01E-02
29GO:0050660: flavin adenine dinucleotide binding2.30E-02
30GO:0061630: ubiquitin protein ligase activity2.51E-02
31GO:0004871: signal transducer activity2.84E-02
32GO:0004519: endonuclease activity3.39E-02
33GO:0016887: ATPase activity4.36E-02
RankGO TermAdjusted P value
1GO:0009501: amyloplast6.10E-04
2GO:0005777: peroxisome7.73E-03
3GO:0010287: plastoglobule1.17E-02
4GO:0009543: chloroplast thylakoid lumen1.21E-02
5GO:0005739: mitochondrion1.72E-02
6GO:0031969: chloroplast membrane2.42E-02
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Gene type



Gene DE type