GO Enrichment Analysis of Co-expressed Genes with
AT3G11630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010157: response to chlorate | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0006223: uracil salvage | 0.00E+00 |
| 5 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 6 | GO:0006412: translation | 4.50E-12 |
| 7 | GO:0032544: plastid translation | 1.34E-11 |
| 8 | GO:0009735: response to cytokinin | 1.58E-11 |
| 9 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.36E-08 |
| 10 | GO:0042254: ribosome biogenesis | 1.36E-06 |
| 11 | GO:0010196: nonphotochemical quenching | 4.14E-05 |
| 12 | GO:0015979: photosynthesis | 5.02E-05 |
| 13 | GO:0071588: hydrogen peroxide mediated signaling pathway | 9.69E-05 |
| 14 | GO:0043489: RNA stabilization | 9.69E-05 |
| 15 | GO:0009817: defense response to fungus, incompatible interaction | 1.07E-04 |
| 16 | GO:0042742: defense response to bacterium | 2.03E-04 |
| 17 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.28E-04 |
| 18 | GO:0009658: chloroplast organization | 2.46E-04 |
| 19 | GO:2001295: malonyl-CoA biosynthetic process | 3.80E-04 |
| 20 | GO:0009409: response to cold | 3.89E-04 |
| 21 | GO:0046686: response to cadmium ion | 5.20E-04 |
| 22 | GO:0006241: CTP biosynthetic process | 5.46E-04 |
| 23 | GO:0006165: nucleoside diphosphate phosphorylation | 5.46E-04 |
| 24 | GO:0006228: UTP biosynthetic process | 5.46E-04 |
| 25 | GO:0010731: protein glutathionylation | 5.46E-04 |
| 26 | GO:0006424: glutamyl-tRNA aminoacylation | 5.46E-04 |
| 27 | GO:0000413: protein peptidyl-prolyl isomerization | 5.67E-04 |
| 28 | GO:0010037: response to carbon dioxide | 7.26E-04 |
| 29 | GO:0015976: carbon utilization | 7.26E-04 |
| 30 | GO:0006183: GTP biosynthetic process | 7.26E-04 |
| 31 | GO:0045727: positive regulation of translation | 7.26E-04 |
| 32 | GO:0044206: UMP salvage | 7.26E-04 |
| 33 | GO:2000122: negative regulation of stomatal complex development | 7.26E-04 |
| 34 | GO:0006546: glycine catabolic process | 7.26E-04 |
| 35 | GO:0000302: response to reactive oxygen species | 7.47E-04 |
| 36 | GO:0006461: protein complex assembly | 9.17E-04 |
| 37 | GO:0006544: glycine metabolic process | 9.17E-04 |
| 38 | GO:0043097: pyrimidine nucleoside salvage | 9.17E-04 |
| 39 | GO:0032543: mitochondrial translation | 9.17E-04 |
| 40 | GO:0010027: thylakoid membrane organization | 1.06E-03 |
| 41 | GO:0006563: L-serine metabolic process | 1.12E-03 |
| 42 | GO:0006828: manganese ion transport | 1.12E-03 |
| 43 | GO:0006206: pyrimidine nucleobase metabolic process | 1.12E-03 |
| 44 | GO:0015995: chlorophyll biosynthetic process | 1.24E-03 |
| 45 | GO:0010019: chloroplast-nucleus signaling pathway | 1.34E-03 |
| 46 | GO:0010555: response to mannitol | 1.34E-03 |
| 47 | GO:0009955: adaxial/abaxial pattern specification | 1.34E-03 |
| 48 | GO:1901259: chloroplast rRNA processing | 1.34E-03 |
| 49 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.34E-03 |
| 50 | GO:0009631: cold acclimation | 1.57E-03 |
| 51 | GO:0009853: photorespiration | 1.72E-03 |
| 52 | GO:0034599: cellular response to oxidative stress | 1.80E-03 |
| 53 | GO:0009642: response to light intensity | 1.81E-03 |
| 54 | GO:0009704: de-etiolation | 1.81E-03 |
| 55 | GO:0009657: plastid organization | 2.07E-03 |
| 56 | GO:0010206: photosystem II repair | 2.33E-03 |
| 57 | GO:0006783: heme biosynthetic process | 2.33E-03 |
| 58 | GO:0005982: starch metabolic process | 2.61E-03 |
| 59 | GO:0035999: tetrahydrofolate interconversion | 2.61E-03 |
| 60 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.90E-03 |
| 61 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.20E-03 |
| 62 | GO:0016485: protein processing | 3.20E-03 |
| 63 | GO:0006816: calcium ion transport | 3.20E-03 |
| 64 | GO:0009773: photosynthetic electron transport in photosystem I | 3.20E-03 |
| 65 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.20E-03 |
| 66 | GO:0005983: starch catabolic process | 3.50E-03 |
| 67 | GO:0045037: protein import into chloroplast stroma | 3.50E-03 |
| 68 | GO:0009767: photosynthetic electron transport chain | 3.82E-03 |
| 69 | GO:0010020: chloroplast fission | 4.15E-03 |
| 70 | GO:0019253: reductive pentose-phosphate cycle | 4.15E-03 |
| 71 | GO:0019344: cysteine biosynthetic process | 5.19E-03 |
| 72 | GO:0009116: nucleoside metabolic process | 5.19E-03 |
| 73 | GO:0000027: ribosomal large subunit assembly | 5.19E-03 |
| 74 | GO:0051017: actin filament bundle assembly | 5.19E-03 |
| 75 | GO:0006289: nucleotide-excision repair | 5.19E-03 |
| 76 | GO:0042744: hydrogen peroxide catabolic process | 5.98E-03 |
| 77 | GO:0009790: embryo development | 6.13E-03 |
| 78 | GO:0006633: fatty acid biosynthetic process | 6.59E-03 |
| 79 | GO:0006012: galactose metabolic process | 6.70E-03 |
| 80 | GO:0009411: response to UV | 6.70E-03 |
| 81 | GO:0007623: circadian rhythm | 7.24E-03 |
| 82 | GO:0015986: ATP synthesis coupled proton transport | 8.79E-03 |
| 83 | GO:0032502: developmental process | 1.01E-02 |
| 84 | GO:0006457: protein folding | 1.06E-02 |
| 85 | GO:0030163: protein catabolic process | 1.06E-02 |
| 86 | GO:0080167: response to karrikin | 1.39E-02 |
| 87 | GO:0055114: oxidation-reduction process | 1.40E-02 |
| 88 | GO:0009793: embryo development ending in seed dormancy | 1.56E-02 |
| 89 | GO:0045454: cell redox homeostasis | 1.67E-02 |
| 90 | GO:0010119: regulation of stomatal movement | 1.68E-02 |
| 91 | GO:0045087: innate immune response | 1.79E-02 |
| 92 | GO:0042542: response to hydrogen peroxide | 2.08E-02 |
| 93 | GO:0008152: metabolic process | 2.27E-02 |
| 94 | GO:0006364: rRNA processing | 2.65E-02 |
| 95 | GO:0009585: red, far-red light phototransduction | 2.65E-02 |
| 96 | GO:0006096: glycolytic process | 2.99E-02 |
| 97 | GO:0009626: plant-type hypersensitive response | 3.12E-02 |
| 98 | GO:0006396: RNA processing | 3.48E-02 |
| 99 | GO:0016036: cellular response to phosphate starvation | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 3 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 4 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 7.55E-18 |
| 7 | GO:0003735: structural constituent of ribosome | 4.57E-14 |
| 8 | GO:0008266: poly(U) RNA binding | 5.21E-08 |
| 9 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 4.47E-06 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.57E-05 |
| 11 | GO:0004130: cytochrome-c peroxidase activity | 2.15E-05 |
| 12 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 9.69E-05 |
| 13 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 9.69E-05 |
| 14 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 9.69E-05 |
| 15 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 9.69E-05 |
| 16 | GO:0004853: uroporphyrinogen decarboxylase activity | 9.69E-05 |
| 17 | GO:0009496: plastoquinol--plastocyanin reductase activity | 9.69E-05 |
| 18 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 9.69E-05 |
| 19 | GO:0019203: carbohydrate phosphatase activity | 9.69E-05 |
| 20 | GO:0004618: phosphoglycerate kinase activity | 2.28E-04 |
| 21 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.28E-04 |
| 22 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.28E-04 |
| 23 | GO:0005528: FK506 binding | 3.08E-04 |
| 24 | GO:0030267: glyoxylate reductase (NADP) activity | 3.80E-04 |
| 25 | GO:0070402: NADPH binding | 3.80E-04 |
| 26 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 3.80E-04 |
| 27 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 3.80E-04 |
| 28 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.80E-04 |
| 29 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.80E-04 |
| 30 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 3.80E-04 |
| 31 | GO:0004075: biotin carboxylase activity | 3.80E-04 |
| 32 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 3.80E-04 |
| 33 | GO:0043023: ribosomal large subunit binding | 5.46E-04 |
| 34 | GO:0004550: nucleoside diphosphate kinase activity | 5.46E-04 |
| 35 | GO:0050662: coenzyme binding | 6.54E-04 |
| 36 | GO:0004845: uracil phosphoribosyltransferase activity | 7.26E-04 |
| 37 | GO:0016836: hydro-lyase activity | 7.26E-04 |
| 38 | GO:0003989: acetyl-CoA carboxylase activity | 9.17E-04 |
| 39 | GO:0004372: glycine hydroxymethyltransferase activity | 9.17E-04 |
| 40 | GO:0003959: NADPH dehydrogenase activity | 9.17E-04 |
| 41 | GO:0016688: L-ascorbate peroxidase activity | 1.12E-03 |
| 42 | GO:0051920: peroxiredoxin activity | 1.34E-03 |
| 43 | GO:0004849: uridine kinase activity | 1.34E-03 |
| 44 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.34E-03 |
| 45 | GO:0004602: glutathione peroxidase activity | 1.34E-03 |
| 46 | GO:0004222: metalloendopeptidase activity | 1.50E-03 |
| 47 | GO:0016209: antioxidant activity | 1.81E-03 |
| 48 | GO:0004034: aldose 1-epimerase activity | 1.81E-03 |
| 49 | GO:0015078: hydrogen ion transmembrane transporter activity | 2.07E-03 |
| 50 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.33E-03 |
| 51 | GO:0047617: acyl-CoA hydrolase activity | 2.61E-03 |
| 52 | GO:0005384: manganese ion transmembrane transporter activity | 2.61E-03 |
| 53 | GO:0015386: potassium:proton antiporter activity | 3.20E-03 |
| 54 | GO:0004089: carbonate dehydratase activity | 3.82E-03 |
| 55 | GO:0015095: magnesium ion transmembrane transporter activity | 3.82E-03 |
| 56 | GO:0031072: heat shock protein binding | 3.82E-03 |
| 57 | GO:0051082: unfolded protein binding | 4.20E-03 |
| 58 | GO:0015079: potassium ion transmembrane transporter activity | 5.55E-03 |
| 59 | GO:0016491: oxidoreductase activity | 6.64E-03 |
| 60 | GO:0022891: substrate-specific transmembrane transporter activity | 6.70E-03 |
| 61 | GO:0016853: isomerase activity | 8.79E-03 |
| 62 | GO:0048038: quinone binding | 9.68E-03 |
| 63 | GO:0051015: actin filament binding | 1.06E-02 |
| 64 | GO:0004601: peroxidase activity | 1.12E-02 |
| 65 | GO:0008237: metallopeptidase activity | 1.16E-02 |
| 66 | GO:0016168: chlorophyll binding | 1.30E-02 |
| 67 | GO:0030247: polysaccharide binding | 1.41E-02 |
| 68 | GO:0008236: serine-type peptidase activity | 1.46E-02 |
| 69 | GO:0042803: protein homodimerization activity | 1.75E-02 |
| 70 | GO:0004364: glutathione transferase activity | 2.08E-02 |
| 71 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.27E-02 |
| 72 | GO:0005198: structural molecule activity | 2.33E-02 |
| 73 | GO:0003729: mRNA binding | 3.07E-02 |
| 74 | GO:0004252: serine-type endopeptidase activity | 4.30E-02 |
| 75 | GO:0030170: pyridoxal phosphate binding | 4.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.16E-59 |
| 3 | GO:0009941: chloroplast envelope | 5.82E-52 |
| 4 | GO:0009570: chloroplast stroma | 1.26E-50 |
| 5 | GO:0009579: thylakoid | 2.14E-31 |
| 6 | GO:0009534: chloroplast thylakoid | 2.41E-31 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.19E-27 |
| 8 | GO:0005840: ribosome | 4.18E-12 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 8.28E-11 |
| 10 | GO:0031977: thylakoid lumen | 9.51E-11 |
| 11 | GO:0009533: chloroplast stromal thylakoid | 3.12E-07 |
| 12 | GO:0005960: glycine cleavage complex | 4.47E-06 |
| 13 | GO:0016020: membrane | 1.18E-05 |
| 14 | GO:0009706: chloroplast inner membrane | 4.23E-05 |
| 15 | GO:0010287: plastoglobule | 5.85E-05 |
| 16 | GO:0010319: stromule | 5.99E-05 |
| 17 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 9.69E-05 |
| 18 | GO:0000311: plastid large ribosomal subunit | 1.68E-04 |
| 19 | GO:0048046: apoplast | 2.03E-04 |
| 20 | GO:0030095: chloroplast photosystem II | 2.19E-04 |
| 21 | GO:0030093: chloroplast photosystem I | 2.28E-04 |
| 22 | GO:0009536: plastid | 3.16E-04 |
| 23 | GO:0009523: photosystem II | 6.99E-04 |
| 24 | GO:0009517: PSII associated light-harvesting complex II | 7.26E-04 |
| 25 | GO:0009512: cytochrome b6f complex | 9.17E-04 |
| 26 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 1.12E-03 |
| 27 | GO:0022626: cytosolic ribosome | 1.40E-03 |
| 28 | GO:0015934: large ribosomal subunit | 1.57E-03 |
| 29 | GO:0031969: chloroplast membrane | 2.25E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 2.33E-03 |
| 31 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.33E-03 |
| 32 | GO:0022625: cytosolic large ribosomal subunit | 2.40E-03 |
| 33 | GO:0009508: plastid chromosome | 3.82E-03 |
| 34 | GO:0000312: plastid small ribosomal subunit | 4.15E-03 |
| 35 | GO:0009654: photosystem II oxygen evolving complex | 5.55E-03 |
| 36 | GO:0015935: small ribosomal subunit | 5.93E-03 |
| 37 | GO:0005759: mitochondrial matrix | 6.59E-03 |
| 38 | GO:0015629: actin cytoskeleton | 6.70E-03 |
| 39 | GO:0019898: extrinsic component of membrane | 9.23E-03 |
| 40 | GO:0009295: nucleoid | 1.16E-02 |
| 41 | GO:0030529: intracellular ribonucleoprotein complex | 1.25E-02 |
| 42 | GO:0005856: cytoskeleton | 2.33E-02 |