Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G11560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0009657: plastid organization4.84E-07
5GO:0006419: alanyl-tRNA aminoacylation4.26E-06
6GO:0042853: L-alanine catabolic process1.18E-05
7GO:0042548: regulation of photosynthesis, light reaction1.18E-05
8GO:0006433: prolyl-tRNA aminoacylation2.19E-05
9GO:0002230: positive regulation of defense response to virus by host2.19E-05
10GO:1901672: positive regulation of systemic acquired resistance2.19E-05
11GO:0009902: chloroplast relocation4.83E-05
12GO:0010109: regulation of photosynthesis4.83E-05
13GO:0006545: glycine biosynthetic process4.83E-05
14GO:0031935: regulation of chromatin silencing4.83E-05
15GO:0006282: regulation of DNA repair6.40E-05
16GO:0034052: positive regulation of plant-type hypersensitive response6.40E-05
17GO:0009643: photosynthetic acclimation8.11E-05
18GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway8.11E-05
19GO:0006396: RNA processing8.82E-05
20GO:0006400: tRNA modification1.19E-04
21GO:0006413: translational initiation1.44E-04
22GO:1900426: positive regulation of defense response to bacterium2.05E-04
23GO:0006415: translational termination2.53E-04
24GO:0010207: photosystem II assembly3.28E-04
25GO:0008299: isoprenoid biosynthetic process4.35E-04
26GO:0006418: tRNA aminoacylation for protein translation4.35E-04
27GO:0031047: gene silencing by RNA7.62E-04
28GO:0051607: defense response to virus8.92E-04
29GO:0001666: response to hypoxia9.24E-04
30GO:0009816: defense response to bacterium, incompatible interaction9.59E-04
31GO:0015995: chlorophyll biosynthetic process1.03E-03
32GO:0048481: plant ovule development1.10E-03
33GO:0009853: photorespiration1.28E-03
34GO:0010114: response to red light1.51E-03
35GO:0006417: regulation of translation1.96E-03
36GO:0048316: seed development2.10E-03
37GO:0009626: plant-type hypersensitive response2.14E-03
38GO:0016569: covalent chromatin modification2.23E-03
39GO:0009553: embryo sac development2.28E-03
40GO:0007623: circadian rhythm3.36E-03
41GO:0009658: chloroplast organization4.52E-03
42GO:0015979: photosynthesis5.74E-03
43GO:0032259: methylation6.65E-03
44GO:0006281: DNA repair6.85E-03
45GO:0006397: mRNA processing7.06E-03
46GO:0035556: intracellular signal transduction1.06E-02
47GO:0055085: transmembrane transport1.21E-02
48GO:0046686: response to cadmium ion2.31E-02
49GO:0009793: embryo development ending in seed dormancy3.07E-02
50GO:0055114: oxidation-reduction process4.58E-02
RankGO TermAdjusted P value
1GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
2GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
3GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.26E-06
4GO:0047958: glycine:2-oxoglutarate aminotransferase activity4.26E-06
5GO:0004813: alanine-tRNA ligase activity4.26E-06
6GO:0070402: NADPH binding2.19E-05
7GO:0004827: proline-tRNA ligase activity2.19E-05
8GO:0016149: translation release factor activity, codon specific3.41E-05
9GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity3.41E-05
10GO:0008453: alanine-glyoxylate transaminase activity4.83E-05
11GO:0003747: translation release factor activity1.83E-04
12GO:0000049: tRNA binding2.77E-04
13GO:0003727: single-stranded RNA binding5.49E-04
14GO:0004812: aminoacyl-tRNA ligase activity5.78E-04
15GO:0016853: isomerase activity6.68E-04
16GO:0016597: amino acid binding8.92E-04
17GO:0030145: manganese ion binding1.20E-03
18GO:0043621: protein self-association1.59E-03
19GO:0005524: ATP binding1.72E-03
20GO:0030170: pyridoxal phosphate binding2.90E-03
21GO:0003743: translation initiation factor activity3.73E-03
22GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.95E-03
23GO:0008168: methyltransferase activity4.40E-03
24GO:0003924: GTPase activity6.85E-03
25GO:0004519: endonuclease activity7.26E-03
26GO:0016887: ATPase activity9.30E-03
27GO:0046872: metal ion binding1.17E-02
28GO:0005525: GTP binding1.45E-02
29GO:0004672: protein kinase activity2.22E-02
30GO:0005515: protein binding4.78E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.77E-10
2GO:0009570: chloroplast stroma9.24E-09
3GO:0017101: aminoacyl-tRNA synthetase multienzyme complex4.26E-06
4GO:0009941: chloroplast envelope8.75E-05
5GO:0042651: thylakoid membrane4.35E-04
6GO:0009707: chloroplast outer membrane1.10E-03
7GO:0009706: chloroplast inner membrane2.32E-03
8GO:0005623: cell2.75E-03
9GO:0009535: chloroplast thylakoid membrane3.34E-03
10GO:0031969: chloroplast membrane5.24E-03
11GO:0005777: peroxisome1.13E-02
12GO:0009534: chloroplast thylakoid1.17E-02
13GO:0005768: endosome1.56E-02
14GO:0005774: vacuolar membrane4.09E-02
15GO:0048046: apoplast4.24E-02
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Gene type



Gene DE type