co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090239: regulation of histone H4 acetylation	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
4	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
5	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0007530: sex determination	0.00E+00
7	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
8	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
9	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
10	GO:0006412: translation	5.63E-140
11	GO:0042254: ribosome biogenesis	8.08E-60
12	GO:0000027: ribosomal large subunit assembly	4.45E-11
13	GO:0000028: ribosomal small subunit assembly	2.26E-10
14	GO:0006626: protein targeting to mitochondrion	2.56E-05
15	GO:0009955: adaxial/abaxial pattern specification	3.26E-05
16	GO:0009735: response to cytokinin	5.06E-05
17	GO:1902626: assembly of large subunit precursor of preribosome	7.62E-05
18	GO:0002181: cytoplasmic translation	7.62E-05
19	GO:0006414: translational elongation	8.76E-05
20	GO:0000387: spliceosomal snRNP assembly	1.71E-04
21	GO:0006820: anion transport	3.22E-04
22	GO:0080156: mitochondrial mRNA modification	3.29E-04
23	GO:0000398: mRNA splicing, via spliceosome	3.51E-04
24	GO:0043248: proteasome assembly	5.50E-04
25	GO:0006511: ubiquitin-dependent protein catabolic process	6.68E-04
26	GO:0051603: proteolysis involved in cellular protein catabolic process	6.79E-04
27	GO:0015801: aromatic amino acid transport	7.46E-04
28	GO:0017198: N-terminal peptidyl-serine acetylation	7.46E-04
29	GO:0030490: maturation of SSU-rRNA	7.46E-04
30	GO:2001006: regulation of cellulose biosynthetic process	7.46E-04
31	GO:0000494: box C/D snoRNA 3'-end processing	7.46E-04
32	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.46E-04
33	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.46E-04
34	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	7.46E-04
35	GO:0006407: rRNA export from nucleus	7.46E-04
36	GO:1990258: histone glutamine methylation	7.46E-04
37	GO:0006475: internal protein amino acid acetylation	7.46E-04
38	GO:0009651: response to salt stress	1.21E-03
39	GO:0001510: RNA methylation	1.40E-03
40	GO:0000413: protein peptidyl-prolyl isomerization	1.52E-03
41	GO:0071668: plant-type cell wall assembly	1.61E-03
42	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	1.61E-03
43	GO:0045901: positive regulation of translational elongation	1.61E-03
44	GO:0045041: protein import into mitochondrial intermembrane space	1.61E-03
45	GO:0048569: post-embryonic animal organ development	1.61E-03
46	GO:0043981: histone H4-K5 acetylation	1.61E-03
47	GO:0006452: translational frameshifting	1.61E-03
48	GO:0010198: synergid death	1.61E-03
49	GO:0015786: UDP-glucose transport	1.61E-03
50	GO:0051788: response to misfolded protein	1.61E-03
51	GO:0006432: phenylalanyl-tRNA aminoacylation	1.61E-03
52	GO:0045905: positive regulation of translational termination	1.61E-03
53	GO:0098656: anion transmembrane transport	1.69E-03
54	GO:0009245: lipid A biosynthetic process	1.69E-03
55	GO:0009793: embryo development ending in seed dormancy	1.73E-03
56	GO:0009965: leaf morphogenesis	2.27E-03
57	GO:0045793: positive regulation of cell size	2.67E-03
58	GO:0015783: GDP-fucose transport	2.67E-03
59	GO:0034227: tRNA thio-modification	2.67E-03
60	GO:0042256: mature ribosome assembly	2.67E-03
61	GO:0090506: axillary shoot meristem initiation	2.67E-03
62	GO:0010452: histone H3-K36 methylation	2.67E-03
63	GO:0032786: positive regulation of DNA-templated transcription, elongation	2.67E-03
64	GO:1904278: positive regulation of wax biosynthetic process	2.67E-03
65	GO:0009150: purine ribonucleotide metabolic process	2.67E-03
66	GO:0032877: positive regulation of DNA endoreduplication	3.88E-03
67	GO:0006166: purine ribonucleoside salvage	3.88E-03
68	GO:0070301: cellular response to hydrogen peroxide	3.88E-03
69	GO:0051085: chaperone mediated protein folding requiring cofactor	3.88E-03
70	GO:0006107: oxaloacetate metabolic process	3.88E-03
71	GO:0006241: CTP biosynthetic process	3.88E-03
72	GO:0072334: UDP-galactose transmembrane transport	3.88E-03
73	GO:0009647: skotomorphogenesis	3.88E-03
74	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.88E-03
75	GO:0006165: nucleoside diphosphate phosphorylation	3.88E-03
76	GO:0006228: UTP biosynthetic process	3.88E-03
77	GO:0006164: purine nucleotide biosynthetic process	3.88E-03
78	GO:0006168: adenine salvage	3.88E-03
79	GO:0009558: embryo sac cellularization	3.88E-03
80	GO:0009165: nucleotide biosynthetic process	5.24E-03
81	GO:0051781: positive regulation of cell division	5.24E-03
82	GO:0042274: ribosomal small subunit biogenesis	5.24E-03
83	GO:0010387: COP9 signalosome assembly	5.24E-03
84	GO:0006183: GTP biosynthetic process	5.24E-03
85	GO:0010363: regulation of plant-type hypersensitive response	5.24E-03
86	GO:2000032: regulation of secondary shoot formation	5.24E-03
87	GO:0006487: protein N-linked glycosylation	5.57E-03
88	GO:0009116: nucleoside metabolic process	5.57E-03
89	GO:0030150: protein import into mitochondrial matrix	5.57E-03
90	GO:0006406: mRNA export from nucleus	5.57E-03
91	GO:0006289: nucleotide-excision repair	5.57E-03
92	GO:1902183: regulation of shoot apical meristem development	6.75E-03
93	GO:0044209: AMP salvage	6.75E-03
94	GO:0031167: rRNA methylation	6.75E-03
95	GO:0060776: simple leaf morphogenesis	6.75E-03
96	GO:0061077: chaperone-mediated protein folding	6.78E-03
97	GO:0046686: response to cadmium ion	6.82E-03
98	GO:0016226: iron-sulfur cluster assembly	7.43E-03
99	GO:0051568: histone H3-K4 methylation	8.39E-03
100	GO:0000470: maturation of LSU-rRNA	8.39E-03
101	GO:0045040: protein import into mitochondrial outer membrane	8.39E-03
102	GO:0008283: cell proliferation	9.34E-03
103	GO:0000245: spliceosomal complex assembly	1.01E-02
104	GO:0016444: somatic cell DNA recombination	1.01E-02
105	GO:1901001: negative regulation of response to salt stress	1.01E-02
106	GO:0000911: cytokinesis by cell plate formation	1.01E-02
107	GO:0009612: response to mechanical stimulus	1.01E-02
108	GO:0042026: protein refolding	1.01E-02
109	GO:0006458: 'de novo' protein folding	1.01E-02
110	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.01E-02
111	GO:0000054: ribosomal subunit export from nucleus	1.01E-02
112	GO:0006413: translational initiation	1.07E-02
113	GO:0032880: regulation of protein localization	1.20E-02
114	GO:0048528: post-embryonic root development	1.20E-02
115	GO:0000338: protein deneddylation	1.20E-02
116	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.20E-02
117	GO:0050821: protein stabilization	1.40E-02
118	GO:0031540: regulation of anthocyanin biosynthetic process	1.40E-02
119	GO:0010928: regulation of auxin mediated signaling pathway	1.40E-02
120	GO:0009690: cytokinin metabolic process	1.40E-02
121	GO:0010090: trichome morphogenesis	1.59E-02
122	GO:0009908: flower development	1.61E-02
123	GO:0044030: regulation of DNA methylation	1.62E-02
124	GO:0009808: lignin metabolic process	1.62E-02
125	GO:0022900: electron transport chain	1.62E-02
126	GO:0006189: 'de novo' IMP biosynthetic process	1.84E-02
127	GO:0048589: developmental growth	1.84E-02
128	GO:0009060: aerobic respiration	1.84E-02
129	GO:0015780: nucleotide-sugar transport	1.84E-02
130	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	2.07E-02
131	GO:0010267: production of ta-siRNAs involved in RNA interference	2.07E-02
132	GO:0043069: negative regulation of programmed cell death	2.31E-02
133	GO:0016441: posttranscriptional gene silencing	2.31E-02
134	GO:0006325: chromatin organization	2.31E-02
135	GO:0010015: root morphogenesis	2.57E-02
136	GO:0006913: nucleocytoplasmic transport	2.57E-02
137	GO:0015770: sucrose transport	2.57E-02
138	GO:0016925: protein sumoylation	2.83E-02
139	GO:0006790: sulfur compound metabolic process	2.83E-02
140	GO:2000028: regulation of photoperiodism, flowering	3.10E-02
141	GO:0010102: lateral root morphogenesis	3.10E-02
142	GO:0010628: positive regulation of gene expression	3.10E-02
143	GO:0006807: nitrogen compound metabolic process	3.10E-02
144	GO:0006108: malate metabolic process	3.10E-02
145	GO:0006457: protein folding	3.16E-02
146	GO:0000724: double-strand break repair via homologous recombination	3.20E-02
147	GO:0048467: gynoecium development	3.37E-02
148	GO:0010020: chloroplast fission	3.37E-02
149	GO:0006446: regulation of translational initiation	3.37E-02
150	GO:0010039: response to iron ion	3.66E-02
151	GO:0034976: response to endoplasmic reticulum stress	3.95E-02
152	GO:0045454: cell redox homeostasis	4.11E-02
153	GO:0009926: auxin polar transport	4.31E-02
154	GO:0009644: response to high light intensity	4.65E-02
155	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.87E-02
156	GO:0051260: protein homooligomerization	4.88E-02
157	GO:0010431: seed maturation	4.88E-02
158	GO:0006334: nucleosome assembly	4.88E-02
159	GO:0006306: DNA methylation	4.88E-02
160	GO:0003333: amino acid transmembrane transport	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0050152: omega-amidase activity	0.00E+00
3	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	6.75E-180
5	GO:0003729: mRNA binding	1.27E-34
6	GO:0019843: rRNA binding	6.66E-14
7	GO:0004298: threonine-type endopeptidase activity	1.90E-07
8	GO:0001055: RNA polymerase II activity	7.14E-06
9	GO:0001054: RNA polymerase I activity	1.43E-05
10	GO:0001056: RNA polymerase III activity	1.93E-05
11	GO:0003746: translation elongation factor activity	2.68E-05
12	GO:0003723: RNA binding	2.82E-05
13	GO:0015288: porin activity	7.23E-05
14	GO:0008308: voltage-gated anion channel activity	9.99E-05
15	GO:0008097: 5S rRNA binding	1.57E-04
16	GO:0008233: peptidase activity	2.17E-04
17	GO:0004576: oligosaccharyl transferase activity	2.65E-04
18	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.96E-04
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.92E-04
20	GO:0031177: phosphopantetheine binding	5.50E-04
21	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.39E-04
22	GO:0000035: acyl binding	7.28E-04
23	GO:1990259: histone-glutamine methyltransferase activity	7.46E-04
24	GO:0035614: snRNA stem-loop binding	7.46E-04
25	GO:1990189: peptide-serine-N-acetyltransferase activity	7.46E-04
26	GO:1990190: peptide-glutamate-N-acetyltransferase activity	7.46E-04
27	GO:0005080: protein kinase C binding	7.46E-04
28	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.95E-04
29	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.15E-03
30	GO:0043022: ribosome binding	1.15E-03
31	GO:0030619: U1 snRNA binding	1.61E-03
32	GO:0015173: aromatic amino acid transmembrane transporter activity	1.61E-03
33	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.61E-03
34	GO:0004826: phenylalanine-tRNA ligase activity	1.61E-03
35	GO:0005457: GDP-fucose transmembrane transporter activity	2.67E-03
36	GO:0070180: large ribosomal subunit rRNA binding	2.67E-03
37	GO:0008430: selenium binding	2.67E-03
38	GO:0070181: small ribosomal subunit rRNA binding	2.67E-03
39	GO:0008649: rRNA methyltransferase activity	2.67E-03
40	GO:0044183: protein binding involved in protein folding	2.71E-03
41	GO:0015266: protein channel activity	3.54E-03
42	GO:0047627: adenylylsulfatase activity	3.88E-03
43	GO:0004749: ribose phosphate diphosphokinase activity	3.88E-03
44	GO:0003999: adenine phosphoribosyltransferase activity	3.88E-03
45	GO:0005460: UDP-glucose transmembrane transporter activity	3.88E-03
46	GO:0004550: nucleoside diphosphate kinase activity	3.88E-03
47	GO:0010011: auxin binding	5.24E-03
48	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.24E-03
49	GO:0070628: proteasome binding	5.24E-03
50	GO:0000993: RNA polymerase II core binding	5.24E-03
51	GO:0031386: protein tag	6.75E-03
52	GO:0005459: UDP-galactose transmembrane transporter activity	6.75E-03
53	GO:0005275: amine transmembrane transporter activity	6.75E-03
54	GO:0031593: polyubiquitin binding	8.39E-03
55	GO:0051920: peroxiredoxin activity	1.01E-02
56	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.20E-02
57	GO:0042162: telomeric DNA binding	1.20E-02
58	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.20E-02
59	GO:0030515: snoRNA binding	1.20E-02
60	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.39E-02
61	GO:0016209: antioxidant activity	1.40E-02
62	GO:0035064: methylated histone binding	1.40E-02
63	GO:0008173: RNA methyltransferase activity	1.62E-02
64	GO:0051082: unfolded protein binding	2.15E-02
65	GO:0008047: enzyme activator activity	2.31E-02
66	GO:0008515: sucrose transmembrane transporter activity	2.57E-02
67	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.57E-02
68	GO:0004129: cytochrome-c oxidase activity	2.57E-02
69	GO:0008794: arsenate reductase (glutaredoxin) activity	2.57E-02
70	GO:0000049: tRNA binding	2.83E-02
71	GO:0050897: cobalt ion binding	3.05E-02
72	GO:0031072: heat shock protein binding	3.10E-02
73	GO:0003697: single-stranded DNA binding	3.35E-02
74	GO:0051119: sugar transmembrane transporter activity	3.66E-02
75	GO:0043130: ubiquitin binding	4.26E-02
76	GO:0005528: FK506 binding	4.26E-02
77	GO:0043621: protein self-association	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0097361: CIA complex	0.00E+00
4	GO:0005840: ribosome	1.73E-129
5	GO:0022626: cytosolic ribosome	1.13E-112
6	GO:0022625: cytosolic large ribosomal subunit	3.43E-107
7	GO:0022627: cytosolic small ribosomal subunit	1.50E-71
8	GO:0005829: cytosol	3.25E-41
9	GO:0005737: cytoplasm	2.69E-34
10	GO:0005730: nucleolus	2.01E-33
11	GO:0009506: plasmodesma	1.56E-19
12	GO:0005774: vacuolar membrane	1.98E-18
13	GO:0015934: large ribosomal subunit	1.52E-16
14	GO:0005773: vacuole	1.07E-09
15	GO:0000502: proteasome complex	4.85E-09
16	GO:0016020: membrane	1.27E-08
17	GO:0005839: proteasome core complex	1.90E-07
18	GO:0015935: small ribosomal subunit	1.90E-07
19	GO:0005665: DNA-directed RNA polymerase II, core complex	5.89E-07
20	GO:0000419: DNA-directed RNA polymerase V complex	2.34E-06
21	GO:0005736: DNA-directed RNA polymerase I complex	4.78E-06
22	GO:0005666: DNA-directed RNA polymerase III complex	7.14E-06
23	GO:0005618: cell wall	2.38E-05
24	GO:0005732: small nucleolar ribonucleoprotein complex	5.24E-05
25	GO:0034719: SMN-Sm protein complex	7.62E-05
26	GO:0005853: eukaryotic translation elongation factor 1 complex	7.62E-05
27	GO:0046930: pore complex	9.99E-05
28	GO:0005742: mitochondrial outer membrane translocase complex	9.99E-05
29	GO:0005685: U1 snRNP	1.33E-04
30	GO:0071011: precatalytic spliceosome	1.71E-04
31	GO:0009507: chloroplast	2.15E-04
32	GO:0000418: DNA-directed RNA polymerase IV complex	2.16E-04
33	GO:0005682: U5 snRNP	2.65E-04
34	GO:0071013: catalytic step 2 spliceosome	2.66E-04
35	GO:0005687: U4 snRNP	3.96E-04
36	GO:0097526: spliceosomal tri-snRNP complex	3.96E-04
37	GO:0008250: oligosaccharyltransferase complex	3.96E-04
38	GO:0005750: mitochondrial respiratory chain complex III	4.51E-04
39	GO:0005758: mitochondrial intermembrane space	6.93E-04
40	GO:0005689: U12-type spliceosomal complex	7.28E-04
41	GO:0030686: 90S preribosome	7.46E-04
42	GO:0032044: DSIF complex	7.46E-04
43	GO:0005741: mitochondrial outer membrane	8.89E-04
44	GO:0071010: prespliceosome	1.61E-03
45	GO:0035145: exon-exon junction complex	1.61E-03
46	GO:0031415: NatA complex	1.61E-03
47	GO:0005697: telomerase holoenzyme complex	1.61E-03
48	GO:0015030: Cajal body	2.00E-03
49	GO:0005686: U2 snRNP	2.34E-03
50	GO:0000439: core TFIIH complex	2.67E-03
51	GO:0034715: pICln-Sm protein complex	2.67E-03
52	GO:0008541: proteasome regulatory particle, lid subcomplex	2.71E-03
53	GO:0048471: perinuclear region of cytoplasm	2.71E-03
54	GO:0019013: viral nucleocapsid	3.54E-03
55	GO:0005886: plasma membrane	3.65E-03
56	GO:0033180: proton-transporting V-type ATPase, V1 domain	3.88E-03
57	GO:1990726: Lsm1-7-Pat1 complex	3.88E-03
58	GO:0005681: spliceosomal complex	3.89E-03
59	GO:0005747: mitochondrial respiratory chain complex I	4.09E-03
60	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.49E-03
61	GO:0016593: Cdc73/Paf1 complex	5.24E-03
62	GO:0000445: THO complex part of transcription export complex	5.24E-03
63	GO:0070469: respiratory chain	6.16E-03
64	GO:0005746: mitochondrial respiratory chain	6.75E-03
65	GO:0000243: commitment complex	8.39E-03
66	GO:0031428: box C/D snoRNP complex	8.39E-03
67	GO:0016272: prefoldin complex	1.01E-02
68	GO:0005762: mitochondrial large ribosomal subunit	1.01E-02
69	GO:0005801: cis-Golgi network	1.01E-02
70	GO:0005759: mitochondrial matrix	1.04E-02
71	GO:0000347: THO complex	1.20E-02
72	GO:0005739: mitochondrion	1.36E-02
73	GO:0071004: U2-type prespliceosome	1.40E-02
74	GO:0045273: respiratory chain complex II	1.40E-02
75	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.40E-02
76	GO:0005688: U6 snRNP	1.40E-02
77	GO:0019773: proteasome core complex, alpha-subunit complex	1.62E-02
78	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.62E-02
79	GO:0005763: mitochondrial small ribosomal subunit	1.84E-02
80	GO:0008180: COP9 signalosome	1.84E-02
81	GO:0016604: nuclear body	2.07E-02
82	GO:0005788: endoplasmic reticulum lumen	2.14E-02
83	GO:0005622: intracellular	2.39E-02
84	GO:0005852: eukaryotic translation initiation factor 3 complex	2.57E-02
85	GO:0005654: nucleoplasm	2.75E-02
86	GO:0032040: small-subunit processome	2.83E-02
87	GO:0031307: integral component of mitochondrial outer membrane	2.83E-02
88	GO:0009508: plastid chromosome	3.10E-02
89	GO:0045271: respiratory chain complex I	4.57E-02
90	GO:0009536: plastid	4.68E-02