GO Enrichment Analysis of Co-expressed Genes with
AT3G11340
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006858: extracellular transport | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:0009423: chorismate biosynthetic process | 1.98E-08 |
| 4 | GO:0009073: aromatic amino acid family biosynthetic process | 2.71E-07 |
| 5 | GO:0046686: response to cadmium ion | 2.11E-06 |
| 6 | GO:0006007: glucose catabolic process | 3.77E-05 |
| 7 | GO:0002143: tRNA wobble position uridine thiolation | 3.77E-05 |
| 8 | GO:0009968: negative regulation of signal transduction | 3.77E-05 |
| 9 | GO:0043609: regulation of carbon utilization | 3.77E-05 |
| 10 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 3.77E-05 |
| 11 | GO:0006430: lysyl-tRNA aminoacylation | 3.77E-05 |
| 12 | GO:0043547: positive regulation of GTPase activity | 3.77E-05 |
| 13 | GO:0009863: salicylic acid mediated signaling pathway | 8.25E-05 |
| 14 | GO:0019632: shikimate metabolic process | 9.40E-05 |
| 15 | GO:0006423: cysteinyl-tRNA aminoacylation | 9.40E-05 |
| 16 | GO:0031538: negative regulation of anthocyanin metabolic process | 9.40E-05 |
| 17 | GO:0009805: coumarin biosynthetic process | 9.40E-05 |
| 18 | GO:0034470: ncRNA processing | 9.40E-05 |
| 19 | GO:0010501: RNA secondary structure unwinding | 1.63E-04 |
| 20 | GO:0071329: cellular response to sucrose stimulus | 2.40E-04 |
| 21 | GO:0043967: histone H4 acetylation | 2.40E-04 |
| 22 | GO:0016973: poly(A)+ mRNA export from nucleus | 4.13E-04 |
| 23 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 5.07E-04 |
| 24 | GO:0043248: proteasome assembly | 5.07E-04 |
| 25 | GO:0043966: histone H3 acetylation | 6.05E-04 |
| 26 | GO:0006368: transcription elongation from RNA polymerase II promoter | 7.07E-04 |
| 27 | GO:0009408: response to heat | 7.79E-04 |
| 28 | GO:0035265: organ growth | 8.13E-04 |
| 29 | GO:0010928: regulation of auxin mediated signaling pathway | 8.13E-04 |
| 30 | GO:2000024: regulation of leaf development | 1.04E-03 |
| 31 | GO:0010112: regulation of systemic acquired resistance | 1.04E-03 |
| 32 | GO:0006096: glycolytic process | 1.05E-03 |
| 33 | GO:0009555: pollen development | 1.58E-03 |
| 34 | GO:0006108: malate metabolic process | 1.67E-03 |
| 35 | GO:0055046: microgametogenesis | 1.67E-03 |
| 36 | GO:0034976: response to endoplasmic reticulum stress | 2.10E-03 |
| 37 | GO:0006457: protein folding | 2.19E-03 |
| 38 | GO:0007005: mitochondrion organization | 2.72E-03 |
| 39 | GO:0009561: megagametogenesis | 3.05E-03 |
| 40 | GO:0042127: regulation of cell proliferation | 3.05E-03 |
| 41 | GO:0008284: positive regulation of cell proliferation | 3.22E-03 |
| 42 | GO:0010118: stomatal movement | 3.40E-03 |
| 43 | GO:0010197: polar nucleus fusion | 3.58E-03 |
| 44 | GO:0010182: sugar mediated signaling pathway | 3.58E-03 |
| 45 | GO:0009749: response to glucose | 3.94E-03 |
| 46 | GO:0030163: protein catabolic process | 4.51E-03 |
| 47 | GO:0006886: intracellular protein transport | 4.99E-03 |
| 48 | GO:0009615: response to virus | 5.31E-03 |
| 49 | GO:0009409: response to cold | 5.64E-03 |
| 50 | GO:0032259: methylation | 5.71E-03 |
| 51 | GO:0006888: ER to Golgi vesicle-mediated transport | 5.94E-03 |
| 52 | GO:0016049: cell growth | 6.16E-03 |
| 53 | GO:0048527: lateral root development | 7.05E-03 |
| 54 | GO:0006099: tricarboxylic acid cycle | 7.75E-03 |
| 55 | GO:0006839: mitochondrial transport | 8.23E-03 |
| 56 | GO:0006897: endocytosis | 8.47E-03 |
| 57 | GO:0008283: cell proliferation | 8.96E-03 |
| 58 | GO:0009735: response to cytokinin | 9.66E-03 |
| 59 | GO:0009737: response to abscisic acid | 1.00E-02 |
| 60 | GO:0009809: lignin biosynthetic process | 1.11E-02 |
| 61 | GO:0006364: rRNA processing | 1.11E-02 |
| 62 | GO:0009793: embryo development ending in seed dormancy | 1.11E-02 |
| 63 | GO:0009553: embryo sac development | 1.39E-02 |
| 64 | GO:0009790: embryo development | 1.86E-02 |
| 65 | GO:0006413: translational initiation | 1.99E-02 |
| 66 | GO:0042742: defense response to bacterium | 2.15E-02 |
| 67 | GO:0006470: protein dephosphorylation | 2.30E-02 |
| 68 | GO:0009617: response to bacterium | 2.37E-02 |
| 69 | GO:0010468: regulation of gene expression | 2.37E-02 |
| 70 | GO:0042254: ribosome biogenesis | 2.89E-02 |
| 71 | GO:0009723: response to ethylene | 3.16E-02 |
| 72 | GO:0006397: mRNA processing | 4.52E-02 |
| 73 | GO:0008152: metabolic process | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008186: RNA-dependent ATPase activity | 0.00E+00 |
| 2 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 3 | GO:0061605: molybdopterin-synthase adenylyltransferase activity | 0.00E+00 |
| 4 | GO:0003855: 3-dehydroquinate dehydratase activity | 0.00E+00 |
| 5 | GO:0061604: molybdopterin-synthase sulfurtransferase activity | 0.00E+00 |
| 6 | GO:0003856: 3-dehydroquinate synthase activity | 0.00E+00 |
| 7 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 8 | GO:0004764: shikimate 3-dehydrogenase (NADP+) activity | 0.00E+00 |
| 9 | GO:0008746: NAD(P)+ transhydrogenase activity | 3.77E-05 |
| 10 | GO:0004824: lysine-tRNA ligase activity | 3.77E-05 |
| 11 | GO:0004817: cysteine-tRNA ligase activity | 9.40E-05 |
| 12 | GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | 9.40E-05 |
| 13 | GO:0008026: ATP-dependent helicase activity | 1.02E-04 |
| 14 | GO:0042409: caffeoyl-CoA O-methyltransferase activity | 1.63E-04 |
| 15 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 1.63E-04 |
| 16 | GO:0004792: thiosulfate sulfurtransferase activity | 2.40E-04 |
| 17 | GO:0000993: RNA polymerase II core binding | 3.24E-04 |
| 18 | GO:0004930: G-protein coupled receptor activity | 3.24E-04 |
| 19 | GO:0004004: ATP-dependent RNA helicase activity | 3.80E-04 |
| 20 | GO:0008641: small protein activating enzyme activity | 4.13E-04 |
| 21 | GO:0016615: malate dehydrogenase activity | 5.07E-04 |
| 22 | GO:0008420: CTD phosphatase activity | 5.07E-04 |
| 23 | GO:0030060: L-malate dehydrogenase activity | 6.05E-04 |
| 24 | GO:0003724: RNA helicase activity | 9.23E-04 |
| 25 | GO:0030955: potassium ion binding | 1.15E-03 |
| 26 | GO:0004743: pyruvate kinase activity | 1.15E-03 |
| 27 | GO:0008171: O-methyltransferase activity | 1.28E-03 |
| 28 | GO:0015114: phosphate ion transmembrane transporter activity | 1.67E-03 |
| 29 | GO:0004402: histone acetyltransferase activity | 3.40E-03 |
| 30 | GO:0010181: FMN binding | 3.76E-03 |
| 31 | GO:0005096: GTPase activator activity | 6.60E-03 |
| 32 | GO:0030145: manganese ion binding | 7.05E-03 |
| 33 | GO:0050661: NADP binding | 8.23E-03 |
| 34 | GO:0005198: structural molecule activity | 9.73E-03 |
| 35 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.33E-02 |
| 36 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.33E-02 |
| 37 | GO:0051082: unfolded protein binding | 1.42E-02 |
| 38 | GO:0004386: helicase activity | 1.51E-02 |
| 39 | GO:0005524: ATP binding | 1.71E-02 |
| 40 | GO:0046872: metal ion binding | 2.07E-02 |
| 41 | GO:0008194: UDP-glycosyltransferase activity | 2.26E-02 |
| 42 | GO:0003743: translation initiation factor activity | 2.33E-02 |
| 43 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.48E-02 |
| 44 | GO:0008168: methyltransferase activity | 2.78E-02 |
| 45 | GO:0000287: magnesium ion binding | 2.81E-02 |
| 46 | GO:0043565: sequence-specific DNA binding | 3.03E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005829: cytosol | 3.53E-06 |
| 2 | GO:0008023: transcription elongation factor complex | 3.77E-05 |
| 3 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 1.63E-04 |
| 4 | GO:0030132: clathrin coat of coated pit | 1.63E-04 |
| 5 | GO:0005774: vacuolar membrane | 1.90E-04 |
| 6 | GO:0033588: Elongator holoenzyme complex | 2.40E-04 |
| 7 | GO:0005730: nucleolus | 2.64E-04 |
| 8 | GO:0030127: COPII vesicle coat | 5.07E-04 |
| 9 | GO:0000123: histone acetyltransferase complex | 7.07E-04 |
| 10 | GO:0009506: plasmodesma | 8.05E-04 |
| 11 | GO:0005618: cell wall | 1.20E-03 |
| 12 | GO:0005740: mitochondrial envelope | 1.28E-03 |
| 13 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.40E-03 |
| 14 | GO:0031307: integral component of mitochondrial outer membrane | 1.53E-03 |
| 15 | GO:0009532: plastid stroma | 2.56E-03 |
| 16 | GO:0000775: chromosome, centromeric region | 2.72E-03 |
| 17 | GO:0005737: cytoplasm | 2.88E-03 |
| 18 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.58E-03 |
| 19 | GO:0016592: mediator complex | 4.32E-03 |
| 20 | GO:0005694: chromosome | 4.32E-03 |
| 21 | GO:0010319: stromule | 4.90E-03 |
| 22 | GO:0009536: plastid | 4.98E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 5.31E-03 |
| 24 | GO:0005788: endoplasmic reticulum lumen | 5.52E-03 |
| 25 | GO:0016020: membrane | 6.03E-03 |
| 26 | GO:0043231: intracellular membrane-bounded organelle | 6.56E-03 |
| 27 | GO:0000502: proteasome complex | 1.11E-02 |
| 28 | GO:0009570: chloroplast stroma | 1.13E-02 |
| 29 | GO:0005635: nuclear envelope | 1.16E-02 |
| 30 | GO:0005747: mitochondrial respiratory chain complex I | 1.27E-02 |
| 31 | GO:0010008: endosome membrane | 1.27E-02 |
| 32 | GO:0005834: heterotrimeric G-protein complex | 1.30E-02 |
| 33 | GO:0005654: nucleoplasm | 1.63E-02 |
| 34 | GO:0009543: chloroplast thylakoid lumen | 1.66E-02 |
| 35 | GO:0005886: plasma membrane | 2.96E-02 |
| 36 | GO:0005773: vacuole | 3.17E-02 |
| 37 | GO:0005743: mitochondrial inner membrane | 4.17E-02 |
| 38 | GO:0005634: nucleus | 4.41E-02 |
| 39 | GO:0009507: chloroplast | 4.99E-02 |