Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G11250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010513: positive regulation of phosphatidylinositol biosynthetic process0.00E+00
2GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
3GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
4GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
5GO:0000740: nuclear membrane fusion0.00E+00
6GO:0006592: ornithine biosynthetic process0.00E+00
7GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
8GO:0044843: cell cycle G1/S phase transition0.00E+00
9GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
10GO:0046890: regulation of lipid biosynthetic process0.00E+00
11GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
12GO:0006412: translation5.53E-114
13GO:0042254: ribosome biogenesis8.72E-45
14GO:0000027: ribosomal large subunit assembly1.36E-11
15GO:0006626: protein targeting to mitochondrion1.43E-05
16GO:0009735: response to cytokinin1.53E-05
17GO:0009967: positive regulation of signal transduction1.65E-05
18GO:0000028: ribosomal small subunit assembly4.67E-05
19GO:1902626: assembly of large subunit precursor of preribosome5.47E-05
20GO:0002181: cytoplasmic translation5.47E-05
21GO:0006164: purine nucleotide biosynthetic process1.15E-04
22GO:0006820: anion transport2.19E-04
23GO:0009793: embryo development ending in seed dormancy2.55E-04
24GO:0051603: proteolysis involved in cellular protein catabolic process4.05E-04
25GO:0043248: proteasome assembly4.15E-04
26GO:0030150: protein import into mitochondrial matrix4.83E-04
27GO:0009955: adaxial/abaxial pattern specification5.51E-04
28GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.19E-04
29GO:0018002: N-terminal peptidyl-glutamic acid acetylation6.19E-04
30GO:0006407: rRNA export from nucleus6.19E-04
31GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.19E-04
32GO:0006475: internal protein amino acid acetylation6.19E-04
33GO:0015801: aromatic amino acid transport6.19E-04
34GO:1990258: histone glutamine methylation6.19E-04
35GO:0048453: sepal formation6.19E-04
36GO:0017198: N-terminal peptidyl-serine acetylation6.19E-04
37GO:0031060: regulation of histone methylation6.19E-04
38GO:2001006: regulation of cellulose biosynthetic process6.19E-04
39GO:0000494: box C/D snoRNA 3'-end processing6.19E-04
40GO:0006511: ubiquitin-dependent protein catabolic process8.86E-04
41GO:0009651: response to salt stress9.81E-04
42GO:0000413: protein peptidyl-prolyl isomerization1.06E-03
43GO:0046686: response to cadmium ion1.21E-03
44GO:0009245: lipid A biosynthetic process1.27E-03
45GO:0006189: 'de novo' IMP biosynthetic process1.27E-03
46GO:0098656: anion transmembrane transport1.27E-03
47GO:0055129: L-proline biosynthetic process1.33E-03
48GO:0006452: translational frameshifting1.33E-03
49GO:0010198: synergid death1.33E-03
50GO:0015786: UDP-glucose transport1.33E-03
51GO:0006432: phenylalanyl-tRNA aminoacylation1.33E-03
52GO:0051788: response to misfolded protein1.33E-03
53GO:0045905: positive regulation of translational termination1.33E-03
54GO:0071668: plant-type cell wall assembly1.33E-03
55GO:0045901: positive regulation of translational elongation1.33E-03
56GO:0045041: protein import into mitochondrial intermembrane space1.33E-03
57GO:0055088: lipid homeostasis1.33E-03
58GO:0000387: spliceosomal snRNP assembly1.51E-03
59GO:0010452: histone H3-K36 methylation2.19E-03
60GO:0046168: glycerol-3-phosphate catabolic process2.19E-03
61GO:0046417: chorismate metabolic process2.19E-03
62GO:1904278: positive regulation of wax biosynthetic process2.19E-03
63GO:0045793: positive regulation of cell size2.19E-03
64GO:0015783: GDP-fucose transport2.19E-03
65GO:0034227: tRNA thio-modification2.19E-03
66GO:0010476: gibberellin mediated signaling pathway2.19E-03
67GO:0071494: cellular response to UV-C2.19E-03
68GO:0042256: mature ribosome assembly2.19E-03
69GO:0010338: leaf formation2.19E-03
70GO:0009647: skotomorphogenesis3.19E-03
71GO:0009113: purine nucleobase biosynthetic process3.19E-03
72GO:0006241: CTP biosynthetic process3.19E-03
73GO:0072334: UDP-galactose transmembrane transport3.19E-03
74GO:0006072: glycerol-3-phosphate metabolic process3.19E-03
75GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.19E-03
76GO:0006168: adenine salvage3.19E-03
77GO:0006165: nucleoside diphosphate phosphorylation3.19E-03
78GO:1902290: positive regulation of defense response to oomycetes3.19E-03
79GO:0006228: UTP biosynthetic process3.19E-03
80GO:0009558: embryo sac cellularization3.19E-03
81GO:0001676: long-chain fatty acid metabolic process3.19E-03
82GO:0032877: positive regulation of DNA endoreduplication3.19E-03
83GO:0046836: glycolipid transport3.19E-03
84GO:0051259: protein oligomerization3.19E-03
85GO:0006166: purine ribonucleoside salvage3.19E-03
86GO:0070301: cellular response to hydrogen peroxide3.19E-03
87GO:0051085: chaperone mediated protein folding requiring cofactor3.19E-03
88GO:0006414: translational elongation3.23E-03
89GO:0000398: mRNA splicing, via spliceosome4.15E-03
90GO:0006289: nucleotide-excision repair4.18E-03
91GO:0006487: protein N-linked glycosylation4.18E-03
92GO:0009116: nucleoside metabolic process4.18E-03
93GO:0006183: GTP biosynthetic process4.30E-03
94GO:0010363: regulation of plant-type hypersensitive response4.30E-03
95GO:0032366: intracellular sterol transport4.30E-03
96GO:0009165: nucleotide biosynthetic process4.30E-03
97GO:0051781: positive regulation of cell division4.30E-03
98GO:0042274: ribosomal small subunit biogenesis4.30E-03
99GO:0061077: chaperone-mediated protein folding5.08E-03
100GO:0071493: cellular response to UV-B5.52E-03
101GO:0031167: rRNA methylation5.52E-03
102GO:0036065: fucosylation5.52E-03
103GO:1902183: regulation of shoot apical meristem development5.52E-03
104GO:0044209: AMP salvage5.52E-03
105GO:0016226: iron-sulfur cluster assembly5.56E-03
106GO:0071215: cellular response to abscisic acid stimulus6.07E-03
107GO:0008283: cell proliferation6.46E-03
108GO:0009926: auxin polar transport6.46E-03
109GO:0006457: protein folding6.62E-03
110GO:0045040: protein import into mitochondrial outer membrane6.85E-03
111GO:0010358: leaf shaping6.85E-03
112GO:0000741: karyogamy6.85E-03
113GO:0006561: proline biosynthetic process6.85E-03
114GO:0051568: histone H3-K4 methylation6.85E-03
115GO:0006413: translational initiation6.92E-03
116GO:0009965: leaf morphogenesis7.50E-03
117GO:0045454: cell redox homeostasis8.23E-03
118GO:1901001: negative regulation of response to salt stress8.28E-03
119GO:0009612: response to mechanical stimulus8.28E-03
120GO:0000911: cytokinesis by cell plate formation8.28E-03
121GO:0006458: 'de novo' protein folding8.28E-03
122GO:0042026: protein refolding8.28E-03
123GO:0016444: somatic cell DNA recombination8.28E-03
124GO:0009648: photoperiodism8.28E-03
125GO:0010197: polar nucleus fusion8.37E-03
126GO:0006364: rRNA processing9.47E-03
127GO:0071446: cellular response to salicylic acid stimulus9.81E-03
128GO:0032880: regulation of protein localization9.81E-03
129GO:0048528: post-embryonic root development9.81E-03
130GO:0080156: mitochondrial mRNA modification1.04E-02
131GO:0009690: cytokinin metabolic process1.14E-02
132GO:1900150: regulation of defense response to fungus1.14E-02
133GO:0050821: protein stabilization1.14E-02
134GO:0031540: regulation of anthocyanin biosynthetic process1.14E-02
135GO:0009408: response to heat1.19E-02
136GO:0001558: regulation of cell growth1.32E-02
137GO:0001510: RNA methylation1.32E-02
138GO:0006526: arginine biosynthetic process1.32E-02
139GO:0044030: regulation of DNA methylation1.32E-02
140GO:0009808: lignin metabolic process1.32E-02
141GO:0010286: heat acclimation1.34E-02
142GO:0048589: developmental growth1.50E-02
143GO:0009060: aerobic respiration1.50E-02
144GO:0015780: nucleotide-sugar transport1.50E-02
145GO:0007338: single fertilization1.50E-02
146GO:0009627: systemic acquired resistance1.69E-02
147GO:0043069: negative regulation of programmed cell death1.88E-02
148GO:0045036: protein targeting to chloroplast1.88E-02
149GO:0016441: posttranscriptional gene silencing1.88E-02
150GO:0072593: reactive oxygen species metabolic process2.08E-02
151GO:0009073: aromatic amino acid family biosynthetic process2.08E-02
152GO:0006913: nucleocytoplasmic transport2.08E-02
153GO:0015770: sucrose transport2.08E-02
154GO:0016485: protein processing2.08E-02
155GO:0010015: root morphogenesis2.08E-02
156GO:0016925: protein sumoylation2.30E-02
157GO:0000724: double-strand break repair via homologous recombination2.39E-02
158GO:0010102: lateral root morphogenesis2.52E-02
159GO:2000028: regulation of photoperiodism, flowering2.52E-02
160GO:0048467: gynoecium development2.74E-02
161GO:0048440: carpel development2.74E-02
162GO:0006446: regulation of translational initiation2.74E-02
163GO:0009933: meristem structural organization2.74E-02
164GO:0009969: xyloglucan biosynthetic process2.97E-02
165GO:0006631: fatty acid metabolic process2.98E-02
166GO:0034976: response to endoplasmic reticulum stress3.21E-02
167GO:0006071: glycerol metabolic process3.21E-02
168GO:0009863: salicylic acid mediated signaling pathway3.46E-02
169GO:0006406: mRNA export from nucleus3.46E-02
170GO:0009644: response to high light intensity3.49E-02
171GO:0009617: response to bacterium3.70E-02
172GO:0051302: regulation of cell division3.71E-02
173GO:0006306: DNA methylation3.97E-02
174GO:0003333: amino acid transmembrane transport3.97E-02
175GO:0051260: protein homooligomerization3.97E-02
176GO:0010431: seed maturation3.97E-02
177GO:0006334: nucleosome assembly3.97E-02
178GO:0007005: mitochondrion organization4.23E-02
179GO:0080092: regulation of pollen tube growth4.23E-02
180GO:0006486: protein glycosylation4.34E-02
181GO:0010082: regulation of root meristem growth4.50E-02
182GO:0040007: growth4.50E-02
183GO:0006012: galactose metabolic process4.50E-02
184GO:0010584: pollen exine formation4.78E-02
185GO:0048443: stamen development4.78E-02
186GO:0010089: xylem development4.78E-02
187GO:0009909: regulation of flower development4.80E-02
RankGO TermAdjusted P value
1GO:0004637: phosphoribosylamine-glycine ligase activity0.00E+00
2GO:0004735: pyrroline-5-carboxylate reductase activity0.00E+00
3GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
4GO:0008777: acetylornithine deacetylase activity0.00E+00
5GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
7GO:0003735: structural constituent of ribosome1.74E-140
8GO:0003729: mRNA binding2.25E-37
9GO:0019843: rRNA binding8.33E-15
10GO:0004298: threonine-type endopeptidase activity1.81E-09
11GO:0008233: peptidase activity2.04E-06
12GO:0003746: translation elongation factor activity1.22E-05
13GO:0005078: MAP-kinase scaffold activity1.65E-05
14GO:0015288: porin activity4.67E-05
15GO:0008308: voltage-gated anion channel activity6.50E-05
16GO:0008097: 5S rRNA binding1.15E-04
17GO:0004576: oligosaccharyl transferase activity1.96E-04
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.89E-04
19GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.97E-04
20GO:0031177: phosphopantetheine binding4.15E-04
21GO:0000035: acyl binding5.51E-04
22GO:0047326: inositol tetrakisphosphate 5-kinase activity6.19E-04
23GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.19E-04
24GO:1990189: peptide-serine-N-acetyltransferase activity6.19E-04
25GO:0030544: Hsp70 protein binding6.19E-04
26GO:1990190: peptide-glutamate-N-acetyltransferase activity6.19E-04
27GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.19E-04
28GO:1990259: histone-glutamine methyltransferase activity6.19E-04
29GO:0035614: snRNA stem-loop binding6.19E-04
30GO:0016817: hydrolase activity, acting on acid anhydrides6.19E-04
31GO:0000824: inositol tetrakisphosphate 3-kinase activity6.19E-04
32GO:0008235: metalloexopeptidase activity7.04E-04
33GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.76E-04
34GO:0043022: ribosome binding8.76E-04
35GO:0004839: ubiquitin activating enzyme activity1.33E-03
36GO:1990585: hydroxyproline O-arabinosyltransferase activity1.33E-03
37GO:0004106: chorismate mutase activity1.33E-03
38GO:0004826: phenylalanine-tRNA ligase activity1.33E-03
39GO:0030619: U1 snRNA binding1.33E-03
40GO:0015173: aromatic amino acid transmembrane transporter activity1.33E-03
41GO:0004129: cytochrome-c oxidase activity2.04E-03
42GO:0044183: protein binding involved in protein folding2.04E-03
43GO:0003723: RNA binding2.09E-03
44GO:0008649: rRNA methyltransferase activity2.19E-03
45GO:0032947: protein complex scaffold2.19E-03
46GO:0070181: small ribosomal subunit rRNA binding2.19E-03
47GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.19E-03
48GO:0005457: GDP-fucose transmembrane transporter activity2.19E-03
49GO:0070180: large ribosomal subunit rRNA binding2.19E-03
50GO:0015462: ATPase-coupled protein transmembrane transporter activity2.19E-03
51GO:0008430: selenium binding2.19E-03
52GO:0015266: protein channel activity2.66E-03
53GO:0003999: adenine phosphoribosyltransferase activity3.19E-03
54GO:0005460: UDP-glucose transmembrane transporter activity3.19E-03
55GO:0004550: nucleoside diphosphate kinase activity3.19E-03
56GO:0017089: glycolipid transporter activity3.19E-03
57GO:0004749: ribose phosphate diphosphokinase activity3.19E-03
58GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.44E-03
59GO:0070628: proteasome binding4.30E-03
60GO:0010011: auxin binding4.30E-03
61GO:0051861: glycolipid binding4.30E-03
62GO:0004888: transmembrane signaling receptor activity5.52E-03
63GO:0005459: UDP-galactose transmembrane transporter activity5.52E-03
64GO:0008641: small protein activating enzyme activity5.52E-03
65GO:0005275: amine transmembrane transporter activity5.52E-03
66GO:0031386: protein tag5.52E-03
67GO:0004040: amidase activity5.52E-03
68GO:0031593: polyubiquitin binding6.85E-03
69GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity6.85E-03
70GO:0102391: decanoate--CoA ligase activity8.28E-03
71GO:0051920: peroxiredoxin activity8.28E-03
72GO:0042162: telomeric DNA binding9.81E-03
73GO:0030515: snoRNA binding9.81E-03
74GO:0004467: long-chain fatty acid-CoA ligase activity9.81E-03
75GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity9.81E-03
76GO:0005338: nucleotide-sugar transmembrane transporter activity9.81E-03
77GO:0000166: nucleotide binding1.12E-02
78GO:0004034: aldose 1-epimerase activity1.14E-02
79GO:0016209: antioxidant activity1.14E-02
80GO:0008237: metallopeptidase activity1.34E-02
81GO:0051082: unfolded protein binding1.49E-02
82GO:0000989: transcription factor activity, transcription factor binding1.50E-02
83GO:0008889: glycerophosphodiester phosphodiesterase activity1.50E-02
84GO:0008417: fucosyltransferase activity1.50E-02
85GO:0001055: RNA polymerase II activity1.68E-02
86GO:0008047: enzyme activator activity1.88E-02
87GO:0008515: sucrose transmembrane transporter activity2.08E-02
88GO:0005089: Rho guanyl-nucleotide exchange factor activity2.08E-02
89GO:0008794: arsenate reductase (glutaredoxin) activity2.08E-02
90GO:0008327: methyl-CpG binding2.08E-02
91GO:0001054: RNA polymerase I activity2.08E-02
92GO:0004177: aminopeptidase activity2.08E-02
93GO:0001056: RNA polymerase III activity2.30E-02
94GO:0000049: tRNA binding2.30E-02
95GO:0003697: single-stranded DNA binding2.51E-02
96GO:0031072: heat shock protein binding2.52E-02
97GO:0008266: poly(U) RNA binding2.74E-02
98GO:0042393: histone binding2.86E-02
99GO:0051119: sugar transmembrane transporter activity2.97E-02
100GO:0043130: ubiquitin binding3.46E-02
101GO:0005528: FK506 binding3.46E-02
102GO:0043621: protein self-association3.49E-02
103GO:0003743: translation initiation factor activity3.60E-02
104GO:0051087: chaperone binding3.71E-02
105GO:0003756: protein disulfide isomerase activity4.78E-02
106GO:0008514: organic anion transmembrane transporter activity4.78E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005675: holo TFIIH complex0.00E+00
4GO:0005840: ribosome3.28E-105
5GO:0022626: cytosolic ribosome6.10E-97
6GO:0022625: cytosolic large ribosomal subunit9.51E-91
7GO:0022627: cytosolic small ribosomal subunit2.12E-55
8GO:0005829: cytosol7.02E-42
9GO:0005737: cytoplasm8.22E-34
10GO:0005730: nucleolus2.46E-31
11GO:0009506: plasmodesma8.33E-20
12GO:0005774: vacuolar membrane1.36E-18
13GO:0015934: large ribosomal subunit2.08E-17
14GO:0005773: vacuole1.97E-13
15GO:0016020: membrane7.21E-12
16GO:0000502: proteasome complex5.50E-11
17GO:0005839: proteasome core complex1.81E-09
18GO:0015935: small ribosomal subunit7.72E-08
19GO:0005618: cell wall1.78E-07
20GO:0005886: plasma membrane1.29E-05
21GO:0009507: chloroplast5.76E-05
22GO:0046930: pore complex6.50E-05
23GO:0005732: small nucleolar ribonucleoprotein complex1.64E-04
24GO:0008250: oligosaccharyltransferase complex2.97E-04
25GO:0005834: heterotrimeric G-protein complex5.80E-04
26GO:0030686: 90S preribosome6.19E-04
27GO:0005741: mitochondrial outer membrane6.21E-04
28GO:0005742: mitochondrial outer membrane translocase complex1.06E-03
29GO:0019773: proteasome core complex, alpha-subunit complex1.06E-03
30GO:0005685: U1 snRNP1.27E-03
31GO:0031415: NatA complex1.33E-03
32GO:0005697: telomerase holoenzyme complex1.33E-03
33GO:0071011: precatalytic spliceosome1.51E-03
34GO:0071013: catalytic step 2 spliceosome2.04E-03
35GO:0048471: perinuclear region of cytoplasm2.04E-03
36GO:0008541: proteasome regulatory particle, lid subcomplex2.04E-03
37GO:0046861: glyoxysomal membrane2.19E-03
38GO:0034719: SMN-Sm protein complex2.19E-03
39GO:0005853: eukaryotic translation elongation factor 1 complex2.19E-03
40GO:0000439: core TFIIH complex2.19E-03
41GO:0019013: viral nucleocapsid2.66E-03
42GO:0009331: glycerol-3-phosphate dehydrogenase complex3.19E-03
43GO:1990726: Lsm1-7-Pat1 complex3.19E-03
44GO:0000419: DNA-directed RNA polymerase V complex3.76E-03
45GO:0005682: U5 snRNP4.30E-03
46GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)4.30E-03
47GO:0016593: Cdc73/Paf1 complex4.30E-03
48GO:0070469: respiratory chain4.61E-03
49GO:0005687: U4 snRNP5.52E-03
50GO:0097526: spliceosomal tri-snRNP complex5.52E-03
51GO:0005746: mitochondrial respiratory chain5.52E-03
52GO:0005783: endoplasmic reticulum5.76E-03
53GO:0031428: box C/D snoRNP complex6.85E-03
54GO:0005689: U12-type spliceosomal complex8.28E-03
55GO:0016272: prefoldin complex8.28E-03
56GO:0005801: cis-Golgi network8.28E-03
57GO:0005688: U6 snRNP1.14E-02
58GO:0071004: U2-type prespliceosome1.14E-02
59GO:0005681: spliceosomal complex1.17E-02
60GO:0046540: U4/U6 x U5 tri-snRNP complex1.32E-02
61GO:0009514: glyoxysome1.32E-02
62GO:0005736: DNA-directed RNA polymerase I complex1.50E-02
63GO:0005788: endoplasmic reticulum lumen1.60E-02
64GO:0005666: DNA-directed RNA polymerase III complex1.68E-02
65GO:0015030: Cajal body1.68E-02
66GO:0005740: mitochondrial envelope1.88E-02
67GO:0005686: U2 snRNP1.88E-02
68GO:0000418: DNA-directed RNA polymerase IV complex1.88E-02
69GO:0005852: eukaryotic translation initiation factor 3 complex2.08E-02
70GO:0031307: integral component of mitochondrial outer membrane2.30E-02
71GO:0005665: DNA-directed RNA polymerase II, core complex2.30E-02
72GO:0032040: small-subunit processome2.30E-02
73GO:0009508: plastid chromosome2.52E-02
74GO:0005753: mitochondrial proton-transporting ATP synthase complex2.97E-02
75GO:0005758: mitochondrial intermembrane space3.46E-02
76GO:0045271: respiratory chain complex I3.71E-02
77GO:0005744: mitochondrial inner membrane presequence translocase complex4.78E-02
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Gene type



Gene DE type