co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046890: regulation of lipid biosynthetic process	0.00E+00
2	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
3	GO:0051776: detection of redox state	0.00E+00
4	GO:0046292: formaldehyde metabolic process	0.00E+00
5	GO:0010513: positive regulation of phosphatidylinositol biosynthetic process	0.00E+00
6	GO:0010336: gibberellic acid homeostasis	0.00E+00
7	GO:0046294: formaldehyde catabolic process	0.00E+00
8	GO:0016093: polyprenol metabolic process	0.00E+00
9	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
10	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
11	GO:0046460: neutral lipid biosynthetic process	0.00E+00
12	GO:0006721: terpenoid metabolic process	0.00E+00
13	GO:0006069: ethanol oxidation	0.00E+00
14	GO:0051603: proteolysis involved in cellular protein catabolic process	9.21E-06
15	GO:1902290: positive regulation of defense response to oomycetes	1.47E-05
16	GO:0006624: vacuolar protein processing	1.47E-05
17	GO:0006221: pyrimidine nucleotide biosynthetic process	2.72E-05
18	GO:0045454: cell redox homeostasis	5.56E-05
19	GO:1900150: regulation of defense response to fungus	1.53E-04
20	GO:0006835: dicarboxylic acid transport	1.91E-04
21	GO:0016487: farnesol metabolic process	1.91E-04
22	GO:1902265: abscisic acid homeostasis	1.91E-04
23	GO:0006007: glucose catabolic process	1.91E-04
24	GO:0031468: nuclear envelope reassembly	1.91E-04
25	GO:0006526: arginine biosynthetic process	1.91E-04
26	GO:0071712: ER-associated misfolded protein catabolic process	4.29E-04
27	GO:0055088: lipid homeostasis	4.29E-04
28	GO:0044419: interspecies interaction between organisms	4.29E-04
29	GO:0006432: phenylalanyl-tRNA aminoacylation	4.29E-04
30	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.29E-04
31	GO:0019441: tryptophan catabolic process to kynurenine	4.29E-04
32	GO:0009308: amine metabolic process	4.29E-04
33	GO:0097054: L-glutamate biosynthetic process	4.29E-04
34	GO:0006108: malate metabolic process	4.93E-04
35	GO:0050826: response to freezing	4.93E-04
36	GO:0009751: response to salicylic acid	5.36E-04
37	GO:0006629: lipid metabolic process	5.49E-04
38	GO:0006071: glycerol metabolic process	6.92E-04
39	GO:0071494: cellular response to UV-C	6.99E-04
40	GO:0031022: nuclear migration along microfilament	6.99E-04
41	GO:0006591: ornithine metabolic process	6.99E-04
42	GO:0042276: error-prone translesion synthesis	6.99E-04
43	GO:0046417: chorismate metabolic process	6.99E-04
44	GO:0015940: pantothenate biosynthetic process	6.99E-04
45	GO:0071492: cellular response to UV-A	6.99E-04
46	GO:0006275: regulation of DNA replication	6.99E-04
47	GO:0006107: oxaloacetate metabolic process	9.97E-04
48	GO:0006809: nitric oxide biosynthetic process	9.97E-04
49	GO:0006537: glutamate biosynthetic process	9.97E-04
50	GO:1902358: sulfate transmembrane transport	9.97E-04
51	GO:0010109: regulation of photosynthesis	1.32E-03
52	GO:0019676: ammonia assimilation cycle	1.32E-03
53	GO:0015743: malate transport	1.32E-03
54	GO:0071486: cellular response to high light intensity	1.32E-03
55	GO:0009765: photosynthesis, light harvesting	1.32E-03
56	GO:0006749: glutathione metabolic process	1.32E-03
57	GO:0032366: intracellular sterol transport	1.32E-03
58	GO:0044205: 'de novo' UMP biosynthetic process	1.32E-03
59	GO:0009902: chloroplast relocation	1.32E-03
60	GO:0034613: cellular protein localization	1.32E-03
61	GO:0006508: proteolysis	1.44E-03
62	GO:0006520: cellular amino acid metabolic process	1.48E-03
63	GO:0055114: oxidation-reduction process	1.87E-03
64	GO:0006796: phosphate-containing compound metabolic process	2.07E-03
65	GO:0009117: nucleotide metabolic process	2.07E-03
66	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.07E-03
67	GO:0006751: glutathione catabolic process	2.07E-03
68	GO:0034389: lipid particle organization	2.49E-03
69	GO:0009903: chloroplast avoidance movement	2.49E-03
70	GO:0009615: response to virus	2.63E-03
71	GO:0071446: cellular response to salicylic acid stimulus	2.93E-03
72	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.93E-03
73	GO:0050790: regulation of catalytic activity	2.93E-03
74	GO:0010928: regulation of auxin mediated signaling pathway	3.40E-03
75	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.40E-03
76	GO:0030091: protein repair	3.40E-03
77	GO:0042255: ribosome assembly	3.40E-03
78	GO:0000028: ribosomal small subunit assembly	3.40E-03
79	GO:0008219: cell death	3.42E-03
80	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.88E-03
81	GO:0009880: embryonic pattern specification	3.88E-03
82	GO:0010100: negative regulation of photomorphogenesis	3.88E-03
83	GO:0009853: photorespiration	4.33E-03
84	GO:0046685: response to arsenic-containing substance	4.40E-03
85	GO:0019432: triglyceride biosynthetic process	4.40E-03
86	GO:0015780: nucleotide-sugar transport	4.40E-03
87	GO:1900426: positive regulation of defense response to bacterium	4.93E-03
88	GO:0051453: regulation of intracellular pH	4.93E-03
89	GO:0009738: abscisic acid-activated signaling pathway	5.96E-03
90	GO:0072593: reactive oxygen species metabolic process	6.06E-03
91	GO:0009073: aromatic amino acid family biosynthetic process	6.06E-03
92	GO:0018119: peptidyl-cysteine S-nitrosylation	6.06E-03
93	GO:0006378: mRNA polyadenylation	6.06E-03
94	GO:0030048: actin filament-based movement	7.28E-03
95	GO:0006807: nitrogen compound metabolic process	7.28E-03
96	GO:2000028: regulation of photoperiodism, flowering	7.28E-03
97	GO:0007030: Golgi organization	8.57E-03
98	GO:0034976: response to endoplasmic reticulum stress	9.25E-03
99	GO:0009863: salicylic acid mediated signaling pathway	9.94E-03
100	GO:0006487: protein N-linked glycosylation	9.94E-03
101	GO:0016575: histone deacetylation	1.07E-02
102	GO:0046686: response to cadmium ion	1.12E-02
103	GO:0019915: lipid storage	1.14E-02
104	GO:0015992: proton transport	1.14E-02
105	GO:0006281: DNA repair	1.21E-02
106	GO:0016226: iron-sulfur cluster assembly	1.21E-02
107	GO:0006012: galactose metabolic process	1.29E-02
108	GO:0009693: ethylene biosynthetic process	1.29E-02
109	GO:0010118: stomatal movement	1.53E-02
110	GO:0015991: ATP hydrolysis coupled proton transport	1.53E-02
111	GO:0042631: cellular response to water deprivation	1.53E-02
112	GO:0080022: primary root development	1.53E-02
113	GO:0010051: xylem and phloem pattern formation	1.53E-02
114	GO:0009958: positive gravitropism	1.62E-02
115	GO:0006662: glycerol ether metabolic process	1.62E-02
116	GO:0048544: recognition of pollen	1.70E-02
117	GO:0015986: ATP synthesis coupled proton transport	1.70E-02
118	GO:0061025: membrane fusion	1.70E-02
119	GO:0006814: sodium ion transport	1.70E-02
120	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.88E-02
121	GO:0007264: small GTPase mediated signal transduction	1.97E-02
122	GO:0032502: developmental process	1.97E-02
123	GO:1901657: glycosyl compound metabolic process	2.06E-02
124	GO:0010090: trichome morphogenesis	2.06E-02
125	GO:0006464: cellular protein modification process	2.15E-02
126	GO:0009617: response to bacterium	2.22E-02
127	GO:0010286: heat acclimation	2.25E-02
128	GO:0016126: sterol biosynthetic process	2.44E-02
129	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.54E-02
130	GO:0010029: regulation of seed germination	2.54E-02
131	GO:0009816: defense response to bacterium, incompatible interaction	2.54E-02
132	GO:0009611: response to wounding	2.57E-02
133	GO:0042128: nitrate assimilation	2.64E-02
134	GO:0006974: cellular response to DNA damage stimulus	2.64E-02
135	GO:0009813: flavonoid biosynthetic process	3.05E-02
136	GO:0006970: response to osmotic stress	3.09E-02
137	GO:0009407: toxin catabolic process	3.16E-02
138	GO:0005975: carbohydrate metabolic process	3.36E-02
139	GO:0045087: innate immune response	3.49E-02
140	GO:0009637: response to blue light	3.49E-02
141	GO:0006099: tricarboxylic acid cycle	3.60E-02
142	GO:0034599: cellular response to oxidative stress	3.60E-02
143	GO:0042542: response to hydrogen peroxide	4.06E-02
144	GO:0009926: auxin polar transport	4.18E-02
145	GO:0008643: carbohydrate transport	4.41E-02
146	GO:0009636: response to toxic substance	4.54E-02
147	GO:0009965: leaf morphogenesis	4.54E-02
148	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.78E-02
149	GO:0006260: DNA replication	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
2	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
3	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
4	GO:0050152: omega-amidase activity	0.00E+00
5	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
6	GO:0015930: glutamate synthase activity	0.00E+00
7	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
8	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
9	GO:0004151: dihydroorotase activity	0.00E+00
10	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
11	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
12	GO:0047886: farnesol dehydrogenase activity	0.00E+00
13	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.47E-05
14	GO:0004197: cysteine-type endopeptidase activity	1.77E-04
15	GO:0046480: galactolipid galactosyltransferase activity	1.91E-04
16	GO:0080079: cellobiose glucosidase activity	1.91E-04
17	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.91E-04
18	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.91E-04
19	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	1.91E-04
20	GO:0030337: DNA polymerase processivity factor activity	1.91E-04
21	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	1.91E-04
22	GO:0052595: aliphatic-amine oxidase activity	1.91E-04
23	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	1.91E-04
24	GO:0030611: arsenate reductase activity	1.91E-04
25	GO:0016041: glutamate synthase (ferredoxin) activity	1.91E-04
26	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.91E-04
27	GO:0030247: polysaccharide binding	3.36E-04
28	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	4.29E-04
29	GO:0004826: phenylalanine-tRNA ligase activity	4.29E-04
30	GO:0016743: carboxyl- or carbamoyltransferase activity	4.29E-04
31	GO:0004106: chorismate mutase activity	4.29E-04
32	GO:0004061: arylformamidase activity	4.29E-04
33	GO:0044390: ubiquitin-like protein conjugating enzyme binding	4.29E-04
34	GO:0004089: carbonate dehydratase activity	4.93E-04
35	GO:0004848: ureidoglycolate hydrolase activity	6.99E-04
36	GO:0019003: GDP binding	6.99E-04
37	GO:0004557: alpha-galactosidase activity	6.99E-04
38	GO:0052692: raffinose alpha-galactosidase activity	6.99E-04
39	GO:0004185: serine-type carboxypeptidase activity	7.18E-04
40	GO:0000254: C-4 methylsterol oxidase activity	9.97E-04
41	GO:0035529: NADH pyrophosphatase activity	9.97E-04
42	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.32E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.32E-03
44	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.32E-03
45	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.48E-03
46	GO:0051538: 3 iron, 4 sulfur cluster binding	1.68E-03
47	GO:0051117: ATPase binding	2.07E-03
48	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.07E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.07E-03
50	GO:0051920: peroxiredoxin activity	2.49E-03
51	GO:0030060: L-malate dehydrogenase activity	2.49E-03
52	GO:0004602: glutathione peroxidase activity	2.49E-03
53	GO:0004144: diacylglycerol O-acyltransferase activity	2.49E-03
54	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.93E-03
55	GO:0042162: telomeric DNA binding	2.93E-03
56	GO:0004427: inorganic diphosphatase activity	2.93E-03
57	GO:0015140: malate transmembrane transporter activity	2.93E-03
58	GO:0016209: antioxidant activity	3.40E-03
59	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.40E-03
60	GO:0004034: aldose 1-epimerase activity	3.40E-03
61	GO:0008271: secondary active sulfate transmembrane transporter activity	3.88E-03
62	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.88E-03
63	GO:0050897: cobalt ion binding	3.95E-03
64	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.40E-03
65	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.40E-03
66	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.40E-03
67	GO:0001055: RNA polymerase II activity	4.93E-03
68	GO:0047617: acyl-CoA hydrolase activity	4.93E-03
69	GO:0008047: enzyme activator activity	5.48E-03
70	GO:0004860: protein kinase inhibitor activity	6.06E-03
71	GO:0008794: arsenate reductase (glutaredoxin) activity	6.06E-03
72	GO:0016787: hydrolase activity	6.33E-03
73	GO:0015116: sulfate transmembrane transporter activity	6.66E-03
74	GO:0008378: galactosyltransferase activity	6.66E-03
75	GO:0000049: tRNA binding	6.66E-03
76	GO:0004022: alcohol dehydrogenase (NAD) activity	7.28E-03
77	GO:0004175: endopeptidase activity	7.91E-03
78	GO:0008131: primary amine oxidase activity	7.91E-03
79	GO:0008234: cysteine-type peptidase activity	8.31E-03
80	GO:0004725: protein tyrosine phosphatase activity	9.25E-03
81	GO:0004407: histone deacetylase activity	9.94E-03
82	GO:0043130: ubiquitin binding	9.94E-03
83	GO:0015035: protein disulfide oxidoreductase activity	1.10E-02
84	GO:0004176: ATP-dependent peptidase activity	1.14E-02
85	GO:0003756: protein disulfide isomerase activity	1.37E-02
86	GO:0003727: single-stranded RNA binding	1.37E-02
87	GO:0047134: protein-disulfide reductase activity	1.45E-02
88	GO:0030170: pyridoxal phosphate binding	1.49E-02
89	GO:0005509: calcium ion binding	1.61E-02
90	GO:0004791: thioredoxin-disulfide reductase activity	1.70E-02
91	GO:0016853: isomerase activity	1.70E-02
92	GO:0050662: coenzyme binding	1.70E-02
93	GO:0048038: quinone binding	1.88E-02
94	GO:0003824: catalytic activity	2.09E-02
95	GO:0008483: transaminase activity	2.25E-02
96	GO:0008237: metallopeptidase activity	2.25E-02
97	GO:0016597: amino acid binding	2.34E-02
98	GO:0016168: chlorophyll binding	2.54E-02
99	GO:0004806: triglyceride lipase activity	2.74E-02
100	GO:0008168: methyltransferase activity	2.77E-02
101	GO:0008236: serine-type peptidase activity	2.84E-02
102	GO:0016788: hydrolase activity, acting on ester bonds	2.93E-02
103	GO:0046872: metal ion binding	2.95E-02
104	GO:0004222: metalloendopeptidase activity	3.16E-02
105	GO:0030145: manganese ion binding	3.27E-02
106	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.49E-02
107	GO:0003697: single-stranded DNA binding	3.49E-02
108	GO:0008422: beta-glucosidase activity	3.71E-02
109	GO:0005507: copper ion binding	3.88E-02
110	GO:0004364: glutathione transferase activity	4.06E-02
111	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02
112	GO:0015293: symporter activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0097708: intracellular vesicle	0.00E+00
3	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
4	GO:0005773: vacuole	1.36E-05
5	GO:0005697: telomerase holoenzyme complex	4.29E-04
6	GO:0005764: lysosome	5.55E-04
7	GO:0045271: respiratory chain complex I	8.41E-04
8	GO:0005849: mRNA cleavage factor complex	9.97E-04
9	GO:0000323: lytic vacuole	9.97E-04
10	GO:0036513: Derlin-1 retrotranslocation complex	9.97E-04
11	GO:0009507: chloroplast	1.09E-03
12	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.32E-03
13	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.32E-03
14	GO:0005747: mitochondrial respiratory chain complex I	1.33E-03
15	GO:0016591: DNA-directed RNA polymerase II, holoenzyme	1.68E-03
16	GO:0031463: Cul3-RING ubiquitin ligase complex	2.07E-03
17	GO:0005759: mitochondrial matrix	2.86E-03
18	GO:0031359: integral component of chloroplast outer membrane	2.93E-03
19	GO:0005811: lipid particle	3.88E-03
20	GO:0005763: mitochondrial small ribosomal subunit	4.40E-03
21	GO:0005829: cytosol	4.71E-03
22	GO:0000418: DNA-directed RNA polymerase IV complex	5.48E-03
23	GO:0005665: DNA-directed RNA polymerase II, core complex	6.66E-03
24	GO:0031966: mitochondrial membrane	6.99E-03
25	GO:0009508: plastid chromosome	7.28E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	8.57E-03
27	GO:0005753: mitochondrial proton-transporting ATP synthase complex	8.57E-03
28	GO:0000419: DNA-directed RNA polymerase V complex	9.25E-03
29	GO:0005623: cell	1.38E-02
30	GO:0009523: photosystem II	1.79E-02
31	GO:0071944: cell periphery	2.06E-02
32	GO:0005615: extracellular space	2.08E-02
33	GO:0009295: nucleoid	2.25E-02
34	GO:0009536: plastid	2.46E-02
35	GO:0005783: endoplasmic reticulum	2.48E-02
36	GO:0009505: plant-type cell wall	2.54E-02
37	GO:0009707: chloroplast outer membrane	2.95E-02
38	GO:0000325: plant-type vacuole	3.27E-02
39	GO:0005789: endoplasmic reticulum membrane	3.40E-02
40	GO:0005819: spindle	3.71E-02
41	GO:0005739: mitochondrion	4.06E-02
42	GO:0005774: vacuolar membrane	4.29E-02