co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010343: singlet oxygen-mediated programmed cell death	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0036172: thiamine salvage	0.00E+00
5	GO:0048856: anatomical structure development	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0032928: regulation of superoxide anion generation	0.00E+00
8	GO:0016576: histone dephosphorylation	0.00E+00
9	GO:0000304: response to singlet oxygen	3.81E-05
10	GO:0010117: photoprotection	3.81E-05
11	GO:0009229: thiamine diphosphate biosynthetic process	3.81E-05
12	GO:0009228: thiamine biosynthetic process	5.65E-05
13	GO:0006430: lysyl-tRNA aminoacylation	1.75E-04
14	GO:0006567: threonine catabolic process	1.75E-04
15	GO:0016031: tRNA import into mitochondrion	1.75E-04
16	GO:0072387: flavin adenine dinucleotide metabolic process	1.75E-04
17	GO:0048438: floral whorl development	1.75E-04
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.96E-04
19	GO:1901529: positive regulation of anion channel activity	3.96E-04
20	GO:2000071: regulation of defense response by callose deposition	3.96E-04
21	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	3.96E-04
22	GO:0010617: circadian regulation of calcium ion oscillation	3.96E-04
23	GO:0099402: plant organ development	3.96E-04
24	GO:0035335: peptidyl-tyrosine dephosphorylation	3.96E-04
25	GO:0016122: xanthophyll metabolic process	3.96E-04
26	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.47E-04
27	GO:1902448: positive regulation of shade avoidance	6.47E-04
28	GO:1901672: positive regulation of systemic acquired resistance	6.47E-04
29	GO:0009150: purine ribonucleotide metabolic process	6.47E-04
30	GO:0045739: positive regulation of DNA repair	6.47E-04
31	GO:0009658: chloroplast organization	8.79E-04
32	GO:0016226: iron-sulfur cluster assembly	8.98E-04
33	GO:0009399: nitrogen fixation	9.23E-04
34	GO:0033014: tetrapyrrole biosynthetic process	9.23E-04
35	GO:1901332: negative regulation of lateral root development	9.23E-04
36	GO:0006882: cellular zinc ion homeostasis	9.23E-04
37	GO:1900864: mitochondrial RNA modification	1.22E-03
38	GO:0006545: glycine biosynthetic process	1.22E-03
39	GO:0042274: ribosomal small subunit biogenesis	1.22E-03
40	GO:0031935: regulation of chromatin silencing	1.22E-03
41	GO:0006552: leucine catabolic process	1.22E-03
42	GO:0051567: histone H3-K9 methylation	1.22E-03
43	GO:0008295: spermidine biosynthetic process	1.22E-03
44	GO:1902347: response to strigolactone	1.22E-03
45	GO:0034613: cellular protein localization	1.22E-03
46	GO:0006542: glutamine biosynthetic process	1.22E-03
47	GO:0010118: stomatal movement	1.23E-03
48	GO:0046283: anthocyanin-containing compound metabolic process	1.56E-03
49	GO:0031053: primary miRNA processing	1.91E-03
50	GO:1901371: regulation of leaf morphogenesis	1.91E-03
51	GO:0060918: auxin transport	1.91E-03
52	GO:0010190: cytochrome b6f complex assembly	1.91E-03
53	GO:0033365: protein localization to organelle	1.91E-03
54	GO:0009117: nucleotide metabolic process	1.91E-03
55	GO:0016458: gene silencing	1.91E-03
56	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.91E-03
57	GO:0016070: RNA metabolic process	1.91E-03
58	GO:0010310: regulation of hydrogen peroxide metabolic process	2.30E-03
59	GO:0080036: regulation of cytokinin-activated signaling pathway	2.30E-03
60	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.30E-03
61	GO:0010076: maintenance of floral meristem identity	2.30E-03
62	GO:1900056: negative regulation of leaf senescence	2.70E-03
63	GO:0080111: DNA demethylation	2.70E-03
64	GO:0030026: cellular manganese ion homeostasis	2.70E-03
65	GO:0051510: regulation of unidimensional cell growth	2.70E-03
66	GO:0048564: photosystem I assembly	3.13E-03
67	GO:0045292: mRNA cis splicing, via spliceosome	3.13E-03
68	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.13E-03
69	GO:0001522: pseudouridine synthesis	3.13E-03
70	GO:0009704: de-etiolation	3.13E-03
71	GO:0009910: negative regulation of flower development	3.51E-03
72	GO:0022900: electron transport chain	3.58E-03
73	GO:0098656: anion transmembrane transport	4.05E-03
74	GO:0009821: alkaloid biosynthetic process	4.05E-03
75	GO:0006783: heme biosynthetic process	4.05E-03
76	GO:0009638: phototropism	4.54E-03
77	GO:0006779: porphyrin-containing compound biosynthetic process	4.54E-03
78	GO:1900865: chloroplast RNA modification	4.54E-03
79	GO:0010380: regulation of chlorophyll biosynthetic process	4.54E-03
80	GO:1900426: positive regulation of defense response to bacterium	4.54E-03
81	GO:0055062: phosphate ion homeostasis	5.05E-03
82	GO:0006535: cysteine biosynthetic process from serine	5.05E-03
83	GO:0000103: sulfate assimilation	5.05E-03
84	GO:0009688: abscisic acid biosynthetic process	5.05E-03
85	GO:0006816: calcium ion transport	5.58E-03
86	GO:0009682: induced systemic resistance	5.58E-03
87	GO:0006790: sulfur compound metabolic process	6.13E-03
88	GO:0010582: floral meristem determinacy	6.13E-03
89	GO:0009785: blue light signaling pathway	6.70E-03
90	GO:0010075: regulation of meristem growth	6.70E-03
91	GO:0009266: response to temperature stimulus	7.28E-03
92	GO:0000162: tryptophan biosynthetic process	8.51E-03
93	GO:0019344: cysteine biosynthetic process	9.15E-03
94	GO:0006289: nucleotide-excision repair	9.15E-03
95	GO:2000377: regulation of reactive oxygen species metabolic process	9.15E-03
96	GO:0006418: tRNA aminoacylation for protein translation	9.80E-03
97	GO:0006306: DNA methylation	1.05E-02
98	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.12E-02
99	GO:0007005: mitochondrion organization	1.12E-02
100	GO:0009058: biosynthetic process	1.26E-02
101	GO:0010051: xylem and phloem pattern formation	1.41E-02
102	GO:0010087: phloem or xylem histogenesis	1.41E-02
103	GO:0006520: cellular amino acid metabolic process	1.49E-02
104	GO:0009646: response to absence of light	1.56E-02
105	GO:0042752: regulation of circadian rhythm	1.56E-02
106	GO:0009851: auxin biosynthetic process	1.64E-02
107	GO:0080156: mitochondrial mRNA modification	1.72E-02
108	GO:0002229: defense response to oomycetes	1.72E-02
109	GO:0030163: protein catabolic process	1.89E-02
110	GO:0016310: phosphorylation	1.98E-02
111	GO:0042128: nitrate assimilation	2.42E-02
112	GO:0006950: response to stress	2.52E-02
113	GO:0055114: oxidation-reduction process	2.58E-02
114	GO:0048481: plant ovule development	2.71E-02
115	GO:0018298: protein-chromophore linkage	2.71E-02
116	GO:0000160: phosphorelay signal transduction system	2.80E-02
117	GO:0006508: proteolysis	2.89E-02
118	GO:0010218: response to far red light	2.90E-02
119	GO:0009631: cold acclimation	3.00E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	3.20E-02
121	GO:0009637: response to blue light	3.20E-02
122	GO:0046777: protein autophosphorylation	3.38E-02
123	GO:0006897: endocytosis	3.62E-02
124	GO:0009640: photomorphogenesis	3.84E-02
125	GO:0010114: response to red light	3.84E-02
126	GO:0009644: response to high light intensity	4.06E-02
127	GO:0009965: leaf morphogenesis	4.17E-02
128	GO:0031347: regulation of defense response	4.39E-02
129	GO:0000165: MAPK cascade	4.39E-02
130	GO:0009809: lignin biosynthetic process	4.74E-02
131	GO:0009736: cytokinin-activated signaling pathway	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0009008: DNA-methyltransferase activity	0.00E+00
2	GO:0043530: adenosine 5'-monophosphoramidase activity	0.00E+00
3	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
4	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
5	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
6	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
7	GO:0047710: bis(5'-adenosyl)-triphosphatase activity	0.00E+00
8	GO:0008170: N-methyltransferase activity	0.00E+00
9	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
10	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
11	GO:0004848: ureidoglycolate hydrolase activity	5.48E-06
12	GO:0047627: adenylylsulfatase activity	1.27E-05
13	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.75E-04
14	GO:0004824: lysine-tRNA ligase activity	1.75E-04
15	GO:0015085: calcium ion transmembrane transporter activity	1.75E-04
16	GO:0004325: ferrochelatase activity	1.75E-04
17	GO:0004793: threonine aldolase activity	1.75E-04
18	GO:0008732: L-allo-threonine aldolase activity	1.75E-04
19	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.75E-04
20	GO:0071949: FAD binding	2.06E-04
21	GO:0004766: spermidine synthase activity	3.96E-04
22	GO:0009982: pseudouridine synthase activity	4.39E-04
23	GO:0004180: carboxypeptidase activity	6.47E-04
24	GO:0032947: protein complex scaffold	6.47E-04
25	GO:0000900: translation repressor activity, nucleic acid binding	6.47E-04
26	GO:0004075: biotin carboxylase activity	6.47E-04
27	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	6.47E-04
28	GO:0004176: ATP-dependent peptidase activity	8.23E-04
29	GO:0009001: serine O-acetyltransferase activity	9.23E-04
30	GO:0016656: monodehydroascorbate reductase (NADH) activity	9.23E-04
31	GO:0000339: RNA cap binding	9.23E-04
32	GO:0009882: blue light photoreceptor activity	9.23E-04
33	GO:0005319: lipid transporter activity	1.22E-03
34	GO:0015369: calcium:proton antiporter activity	1.22E-03
35	GO:0015368: calcium:cation antiporter activity	1.22E-03
36	GO:0004834: tryptophan synthase activity	1.22E-03
37	GO:0016407: acetyltransferase activity	1.56E-03
38	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.56E-03
39	GO:0004356: glutamate-ammonia ligase activity	1.56E-03
40	GO:0008237: metallopeptidase activity	2.09E-03
41	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.30E-03
42	GO:0009927: histidine phosphotransfer kinase activity	2.30E-03
43	GO:0005515: protein binding	2.59E-03
44	GO:0016621: cinnamoyl-CoA reductase activity	2.70E-03
45	GO:0004222: metalloendopeptidase activity	3.35E-03
46	GO:0050897: cobalt ion binding	3.51E-03
47	GO:0016844: strictosidine synthase activity	4.54E-03
48	GO:0016787: hydrolase activity	5.00E-03
49	GO:0051537: 2 iron, 2 sulfur cluster binding	5.35E-03
50	GO:0005198: structural molecule activity	5.56E-03
51	GO:0004129: cytochrome-c oxidase activity	5.58E-03
52	GO:0015266: protein channel activity	6.70E-03
53	GO:0005315: inorganic phosphate transmembrane transporter activity	6.70E-03
54	GO:0031072: heat shock protein binding	6.70E-03
55	GO:0016491: oxidoreductase activity	6.78E-03
56	GO:0051536: iron-sulfur cluster binding	9.15E-03
57	GO:0051082: unfolded protein binding	9.49E-03
58	GO:0003723: RNA binding	9.79E-03
59	GO:0043424: protein histidine kinase binding	9.80E-03
60	GO:0004386: helicase activity	1.04E-02
61	GO:0008514: organic anion transmembrane transporter activity	1.26E-02
62	GO:0004812: aminoacyl-tRNA ligase activity	1.33E-02
63	GO:0008080: N-acetyltransferase activity	1.49E-02
64	GO:0050662: coenzyme binding	1.56E-02
65	GO:0048038: quinone binding	1.72E-02
66	GO:0003824: catalytic activity	1.75E-02
67	GO:0004518: nuclease activity	1.81E-02
68	GO:0016887: ATPase activity	1.82E-02
69	GO:0004806: triglyceride lipase activity	2.52E-02
70	GO:0008236: serine-type peptidase activity	2.61E-02
71	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.71E-02
72	GO:0005096: GTPase activator activity	2.80E-02
73	GO:0008233: peptidase activity	3.11E-02
74	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.41E-02
75	GO:0043621: protein self-association	4.06E-02
76	GO:0035091: phosphatidylinositol binding	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.73E-13
2	GO:0042651: thylakoid membrane	4.00E-05
3	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.75E-04
4	GO:0005845: mRNA cap binding complex	1.75E-04
5	GO:0005846: nuclear cap binding complex	3.96E-04
6	GO:0009535: chloroplast thylakoid membrane	5.06E-04
7	GO:0016605: PML body	6.47E-04
8	GO:0009941: chloroplast envelope	1.03E-03
9	GO:0009517: PSII associated light-harvesting complex II	1.22E-03
10	GO:0055035: plastid thylakoid membrane	1.56E-03
11	GO:0030140: trans-Golgi network transport vesicle	1.91E-03
12	GO:0009840: chloroplastic endopeptidase Clp complex	2.30E-03
13	GO:0009570: chloroplast stroma	2.42E-03
14	GO:0000123: histone acetyltransferase complex	2.70E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.05E-03
16	GO:0016604: nuclear body	4.54E-03
17	GO:0031969: chloroplast membrane	6.34E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.26E-02
19	GO:0005759: mitochondrial matrix	1.50E-02
20	GO:0009705: plant-type vacuole membrane	1.65E-02
21	GO:0005737: cytoplasm	1.81E-02
22	GO:0009536: plastid	2.06E-02
23	GO:0005778: peroxisomal membrane	2.06E-02
24	GO:0005829: cytosol	2.26E-02
25	GO:0009707: chloroplast outer membrane	2.71E-02
26	GO:0031966: mitochondrial membrane	4.51E-02