co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0009240: isopentenyl diphosphate biosynthetic process	0.00E+00
3	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
4	GO:1990592: protein K69-linked ufmylation	0.00E+00
5	GO:0006721: terpenoid metabolic process	0.00E+00
6	GO:0009236: cobalamin biosynthetic process	0.00E+00
7	GO:0018293: protein-FAD linkage	0.00E+00
8	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
9	GO:0009853: photorespiration	7.34E-13
10	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.79E-10
11	GO:0015991: ATP hydrolysis coupled proton transport	1.94E-08
12	GO:0055114: oxidation-reduction process	8.49E-07
13	GO:0019509: L-methionine salvage from methylthioadenosine	4.54E-06
14	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.29E-06
15	GO:0015992: proton transport	9.23E-06
16	GO:0006099: tricarboxylic acid cycle	1.90E-05
17	GO:0015986: ATP synthesis coupled proton transport	3.07E-05
18	GO:0006221: pyrimidine nucleotide biosynthetic process	7.33E-05
19	GO:0006555: methionine metabolic process	1.66E-04
20	GO:0019354: siroheme biosynthetic process	3.42E-04
21	GO:0016487: farnesol metabolic process	3.42E-04
22	GO:0031539: positive regulation of anthocyanin metabolic process	3.42E-04
23	GO:0031468: nuclear envelope reassembly	3.42E-04
24	GO:0009852: auxin catabolic process	3.42E-04
25	GO:0045454: cell redox homeostasis	3.96E-04
26	GO:0009245: lipid A biosynthetic process	5.41E-04
27	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	7.45E-04
28	GO:0043255: regulation of carbohydrate biosynthetic process	7.45E-04
29	GO:0080026: response to indolebutyric acid	7.45E-04
30	GO:0008154: actin polymerization or depolymerization	7.45E-04
31	GO:0009651: response to salt stress	8.00E-04
32	GO:0006006: glucose metabolic process	1.11E-03
33	GO:0015940: pantothenate biosynthetic process	1.21E-03
34	GO:0071492: cellular response to UV-A	1.21E-03
35	GO:0045793: positive regulation of cell size	1.21E-03
36	GO:0006760: folic acid-containing compound metabolic process	1.21E-03
37	GO:0007030: Golgi organization	1.39E-03
38	GO:0009735: response to cytokinin	1.58E-03
39	GO:0006487: protein N-linked glycosylation	1.72E-03
40	GO:0006107: oxaloacetate metabolic process	1.74E-03
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.74E-03
42	GO:0009399: nitrogen fixation	1.74E-03
43	GO:0042989: sequestering of actin monomers	1.74E-03
44	GO:0009963: positive regulation of flavonoid biosynthetic process	1.74E-03
45	GO:1901332: negative regulation of lateral root development	1.74E-03
46	GO:0080024: indolebutyric acid metabolic process	1.74E-03
47	GO:0032877: positive regulation of DNA endoreduplication	1.74E-03
48	GO:0008299: isoprenoid biosynthetic process	1.90E-03
49	GO:0061077: chaperone-mediated protein folding	2.09E-03
50	GO:0010387: COP9 signalosome assembly	2.33E-03
51	GO:0009765: photosynthesis, light harvesting	2.33E-03
52	GO:0032366: intracellular sterol transport	2.33E-03
53	GO:0044205: 'de novo' UMP biosynthetic process	2.33E-03
54	GO:0000003: reproduction	2.33E-03
55	GO:0006542: glutamine biosynthetic process	2.33E-03
56	GO:0006646: phosphatidylethanolamine biosynthetic process	2.33E-03
57	GO:0070534: protein K63-linked ubiquitination	2.33E-03
58	GO:0051781: positive regulation of cell division	2.33E-03
59	GO:0071486: cellular response to high light intensity	2.33E-03
60	GO:0080022: primary root development	3.17E-03
61	GO:0006662: glycerol ether metabolic process	3.41E-03
62	GO:0043248: proteasome assembly	3.68E-03
63	GO:0007035: vacuolar acidification	3.68E-03
64	GO:0006796: phosphate-containing compound metabolic process	3.68E-03
65	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.68E-03
66	GO:0006301: postreplication repair	3.68E-03
67	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	3.68E-03
68	GO:1901001: negative regulation of response to salt stress	4.43E-03
69	GO:0000338: protein deneddylation	5.23E-03
70	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	5.23E-03
71	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	5.23E-03
72	GO:0022904: respiratory electron transport chain	5.23E-03
73	GO:0050790: regulation of catalytic activity	5.23E-03
74	GO:0080027: response to herbivore	5.23E-03
75	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.08E-03
76	GO:0006506: GPI anchor biosynthetic process	6.08E-03
77	GO:0000028: ribosomal small subunit assembly	6.08E-03
78	GO:0048658: anther wall tapetum development	6.08E-03
79	GO:0010099: regulation of photomorphogenesis	6.98E-03
80	GO:0015995: chlorophyll biosynthetic process	7.19E-03
81	GO:0006979: response to oxidative stress	7.73E-03
82	GO:0046685: response to arsenic-containing substance	7.91E-03
83	GO:0080144: amino acid homeostasis	7.91E-03
84	GO:0046916: cellular transition metal ion homeostasis	7.91E-03
85	GO:0006754: ATP biosynthetic process	7.91E-03
86	GO:0000103: sulfate assimilation	9.92E-03
87	GO:0043069: negative regulation of programmed cell death	9.92E-03
88	GO:0034599: cellular response to oxidative stress	1.06E-02
89	GO:0052544: defense response by callose deposition in cell wall	1.10E-02
90	GO:0006378: mRNA polyadenylation	1.10E-02
91	GO:0030001: metal ion transport	1.15E-02
92	GO:0006790: sulfur compound metabolic process	1.21E-02
93	GO:0016925: protein sumoylation	1.21E-02
94	GO:0009640: photomorphogenesis	1.31E-02
95	GO:0006829: zinc II ion transport	1.32E-02
96	GO:0006807: nitrogen compound metabolic process	1.32E-02
97	GO:0009691: cytokinin biosynthetic process	1.32E-02
98	GO:0006108: malate metabolic process	1.32E-02
99	GO:0010229: inflorescence development	1.32E-02
100	GO:0019853: L-ascorbic acid biosynthetic process	1.56E-02
101	GO:0010039: response to iron ion	1.56E-02
102	GO:0042753: positive regulation of circadian rhythm	1.69E-02
103	GO:0009585: red, far-red light phototransduction	1.77E-02
104	GO:0009116: nucleoside metabolic process	1.82E-02
105	GO:0007010: cytoskeleton organization	1.82E-02
106	GO:0006406: mRNA export from nucleus	1.82E-02
107	GO:2000377: regulation of reactive oxygen species metabolic process	1.82E-02
108	GO:0051603: proteolysis involved in cellular protein catabolic process	1.83E-02
109	GO:0051302: regulation of cell division	1.95E-02
110	GO:0006825: copper ion transport	1.95E-02
111	GO:0019915: lipid storage	2.08E-02
112	GO:0010431: seed maturation	2.08E-02
113	GO:0010017: red or far-red light signaling pathway	2.22E-02
114	GO:0016226: iron-sulfur cluster assembly	2.22E-02
115	GO:0001944: vasculature development	2.37E-02
116	GO:0006012: galactose metabolic process	2.37E-02
117	GO:0034220: ion transmembrane transport	2.81E-02
118	GO:0009958: positive gravitropism	2.96E-02
119	GO:0061025: membrane fusion	3.12E-02
120	GO:0008654: phospholipid biosynthetic process	3.28E-02
121	GO:0000302: response to reactive oxygen species	3.44E-02
122	GO:0010193: response to ozone	3.44E-02
123	GO:0006633: fatty acid biosynthetic process	3.95E-02
124	GO:0010252: auxin homeostasis	3.95E-02
125	GO:0010286: heat acclimation	4.12E-02
126	GO:0000910: cytokinesis	4.30E-02
127	GO:0009615: response to virus	4.47E-02
128	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.65E-02
129	GO:0042128: nitrate assimilation	4.84E-02
130	GO:0009627: systemic acquired resistance	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
2	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0050152: omega-amidase activity	0.00E+00
4	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
5	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
6	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	0.00E+00
7	GO:0004151: dihydroorotase activity	0.00E+00
8	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
9	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
10	GO:0047886: farnesol dehydrogenase activity	0.00E+00
11	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
12	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
13	GO:0042030: ATPase inhibitor activity	0.00E+00
14	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
15	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.19E-09
16	GO:0004129: cytochrome-c oxidase activity	1.57E-08
17	GO:0008794: arsenate reductase (glutaredoxin) activity	1.13E-06
18	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.13E-06
19	GO:0050897: cobalt ion binding	1.35E-05
20	GO:0015078: hydrogen ion transmembrane transporter activity	1.57E-05
21	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.87E-05
22	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.65E-05
23	GO:0047617: acyl-CoA hydrolase activity	2.90E-05
24	GO:0004576: oligosaccharyl transferase activity	7.33E-05
25	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.15E-04
26	GO:0015035: protein disulfide oxidoreductase activity	1.41E-04
27	GO:0031177: phosphopantetheine binding	1.66E-04
28	GO:0000035: acyl binding	2.25E-04
29	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.93E-04
30	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	3.42E-04
31	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	3.42E-04
32	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	3.42E-04
33	GO:0080047: GDP-L-galactose phosphorylase activity	3.42E-04
34	GO:0004307: ethanolaminephosphotransferase activity	3.42E-04
35	GO:0019707: protein-cysteine S-acyltransferase activity	3.42E-04
36	GO:0030611: arsenate reductase activity	3.42E-04
37	GO:0008782: adenosylhomocysteine nucleosidase activity	3.42E-04
38	GO:0008930: methylthioadenosine nucleosidase activity	3.42E-04
39	GO:0080048: GDP-D-glucose phosphorylase activity	3.42E-04
40	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.67E-04
41	GO:0030572: phosphatidyltransferase activity	7.45E-04
42	GO:0004142: diacylglycerol cholinephosphotransferase activity	7.45E-04
43	GO:0016788: hydrolase activity, acting on ester bonds	8.76E-04
44	GO:0004089: carbonate dehydratase activity	1.11E-03
45	GO:0005047: signal recognition particle binding	1.21E-03
46	GO:0004557: alpha-galactosidase activity	1.21E-03
47	GO:0016805: dipeptidase activity	1.21E-03
48	GO:0052692: raffinose alpha-galactosidase activity	1.21E-03
49	GO:0005528: FK506 binding	1.72E-03
50	GO:0051536: iron-sulfur cluster binding	1.72E-03
51	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.74E-03
52	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.74E-03
53	GO:0051539: 4 iron, 4 sulfur cluster binding	1.76E-03
54	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.33E-03
55	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.33E-03
56	GO:0050302: indole-3-acetaldehyde oxidase activity	2.33E-03
57	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.33E-03
58	GO:0010011: auxin binding	2.33E-03
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.51E-03
60	GO:0047134: protein-disulfide reductase activity	2.93E-03
61	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.98E-03
62	GO:0003785: actin monomer binding	2.98E-03
63	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.98E-03
64	GO:0005496: steroid binding	2.98E-03
65	GO:0031386: protein tag	2.98E-03
66	GO:0004356: glutamate-ammonia ligase activity	2.98E-03
67	GO:0016853: isomerase activity	3.67E-03
68	GO:0004791: thioredoxin-disulfide reductase activity	3.67E-03
69	GO:0051117: ATPase binding	3.68E-03
70	GO:0080046: quercetin 4'-O-glucosyltransferase activity	3.68E-03
71	GO:0005507: copper ion binding	3.82E-03
72	GO:0051920: peroxiredoxin activity	4.43E-03
73	GO:0016787: hydrolase activity	4.74E-03
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.80E-03
75	GO:0008235: metalloexopeptidase activity	5.23E-03
76	GO:0004427: inorganic diphosphatase activity	5.23E-03
77	GO:0008143: poly(A) binding	5.23E-03
78	GO:0008320: protein transmembrane transporter activity	5.23E-03
79	GO:0005085: guanyl-nucleotide exchange factor activity	5.23E-03
80	GO:0004034: aldose 1-epimerase activity	6.08E-03
81	GO:0004869: cysteine-type endopeptidase inhibitor activity	6.08E-03
82	GO:0016209: antioxidant activity	6.08E-03
83	GO:0046914: transition metal ion binding	6.98E-03
84	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	7.91E-03
85	GO:0001055: RNA polymerase II activity	8.89E-03
86	GO:0009055: electron carrier activity	1.06E-02
87	GO:0001054: RNA polymerase I activity	1.10E-02
88	GO:0004177: aminopeptidase activity	1.10E-02
89	GO:0046872: metal ion binding	1.15E-02
90	GO:0001056: RNA polymerase III activity	1.21E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	1.41E-02
92	GO:0008061: chitin binding	1.56E-02
93	GO:0004725: protein tyrosine phosphatase activity	1.69E-02
94	GO:0043130: ubiquitin binding	1.82E-02
95	GO:0008234: cysteine-type peptidase activity	1.96E-02
96	GO:0004540: ribonuclease activity	2.08E-02
97	GO:0004298: threonine-type endopeptidase activity	2.08E-02
98	GO:0016746: transferase activity, transferring acyl groups	2.59E-02
99	GO:0003824: catalytic activity	2.65E-02
100	GO:0004527: exonuclease activity	2.96E-02
101	GO:0046873: metal ion transmembrane transporter activity	2.96E-02
102	GO:0050662: coenzyme binding	3.12E-02
103	GO:0004872: receptor activity	3.28E-02
104	GO:0016491: oxidoreductase activity	3.58E-02
105	GO:0004197: cysteine-type endopeptidase activity	3.61E-02
106	GO:0016597: amino acid binding	4.30E-02
107	GO:0015250: water channel activity	4.47E-02
108	GO:0051213: dioxygenase activity	4.47E-02
109	GO:0016168: chlorophyll binding	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0000274: mitochondrial proton-transporting ATP synthase, stator stalk	0.00E+00
2	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
3	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
4	GO:0005747: mitochondrial respiratory chain complex I	9.09E-28
5	GO:0045271: respiratory chain complex I	4.12E-17
6	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.12E-13
7	GO:0031966: mitochondrial membrane	9.66E-12
8	GO:0005739: mitochondrion	1.98E-10
9	GO:0005750: mitochondrial respiratory chain complex III	5.13E-08
10	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.30E-07
11	GO:0045273: respiratory chain complex II	1.30E-07
12	GO:0005829: cytosol	4.17E-06
13	GO:0005773: vacuole	1.56E-05
14	GO:0005774: vacuolar membrane	2.70E-05
15	GO:0033179: proton-transporting V-type ATPase, V0 domain	7.33E-05
16	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	7.33E-05
17	GO:0005746: mitochondrial respiratory chain	1.15E-04
18	GO:0008250: oligosaccharyltransferase complex	1.15E-04
19	GO:0005758: mitochondrial intermembrane space	1.45E-04
20	GO:0070469: respiratory chain	1.68E-04
21	GO:0009536: plastid	3.98E-04
22	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	7.45E-04
23	GO:0005838: proteasome regulatory particle	1.21E-03
24	GO:0005751: mitochondrial respiratory chain complex IV	1.21E-03
25	GO:0000325: plant-type vacuole	1.33E-03
26	GO:0009507: chloroplast	1.60E-03
27	GO:0005759: mitochondrial matrix	1.69E-03
28	GO:0022626: cytosolic ribosome	1.73E-03
29	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.74E-03
30	GO:0000276: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	1.74E-03
31	GO:0005849: mRNA cleavage factor complex	1.74E-03
32	GO:0031372: UBC13-MMS2 complex	2.33E-03
33	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.33E-03
34	GO:0005783: endoplasmic reticulum	2.94E-03
35	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.98E-03
36	GO:0031463: Cul3-RING ubiquitin ligase complex	3.68E-03
37	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.68E-03
38	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.23E-03
39	GO:0005788: endoplasmic reticulum lumen	6.45E-03
40	GO:0005736: DNA-directed RNA polymerase I complex	7.91E-03
41	GO:0008180: COP9 signalosome	7.91E-03
42	GO:0005763: mitochondrial small ribosomal subunit	7.91E-03
43	GO:0005777: peroxisome	8.52E-03
44	GO:0005666: DNA-directed RNA polymerase III complex	8.89E-03
45	GO:0005740: mitochondrial envelope	9.92E-03
46	GO:0008541: proteasome regulatory particle, lid subcomplex	1.10E-02
47	GO:0005665: DNA-directed RNA polymerase II, core complex	1.21E-02
48	GO:0005938: cell cortex	1.32E-02
49	GO:0005737: cytoplasm	1.37E-02
50	GO:0005764: lysosome	1.44E-02
51	GO:0000419: DNA-directed RNA polymerase V complex	1.69E-02
52	GO:0005789: endoplasmic reticulum membrane	1.73E-02
53	GO:0000502: proteasome complex	1.77E-02
54	GO:0005839: proteasome core complex	2.08E-02
55	GO:0016607: nuclear speck	2.16E-02
56	GO:0015629: actin cytoskeleton	2.37E-02
57	GO:0016020: membrane	2.62E-02
58	GO:0009543: chloroplast thylakoid lumen	3.15E-02
59	GO:0009523: photosystem II	3.28E-02
60	GO:0000785: chromatin	3.61E-02
61	GO:0032580: Golgi cisterna membrane	3.95E-02