GO Enrichment Analysis of Co-expressed Genes with
AT3G10405
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 2 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 5 | GO:0048564: photosystem I assembly | 2.07E-06 |
| 6 | GO:0009793: embryo development ending in seed dormancy | 4.93E-06 |
| 7 | GO:0071482: cellular response to light stimulus | 1.69E-04 |
| 8 | GO:0009657: plastid organization | 1.69E-04 |
| 9 | GO:0031426: polycistronic mRNA processing | 1.75E-04 |
| 10 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.75E-04 |
| 11 | GO:1904964: positive regulation of phytol biosynthetic process | 1.75E-04 |
| 12 | GO:0042371: vitamin K biosynthetic process | 1.75E-04 |
| 13 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.75E-04 |
| 14 | GO:0006419: alanyl-tRNA aminoacylation | 1.75E-04 |
| 15 | GO:0019646: aerobic electron transport chain | 1.75E-04 |
| 16 | GO:0000373: Group II intron splicing | 2.06E-04 |
| 17 | GO:0080005: photosystem stoichiometry adjustment | 3.96E-04 |
| 18 | GO:0000256: allantoin catabolic process | 3.96E-04 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.96E-04 |
| 20 | GO:0034755: iron ion transmembrane transport | 3.96E-04 |
| 21 | GO:0009451: RNA modification | 4.69E-04 |
| 22 | GO:0010136: ureide catabolic process | 6.47E-04 |
| 23 | GO:0005977: glycogen metabolic process | 6.47E-04 |
| 24 | GO:0006013: mannose metabolic process | 6.47E-04 |
| 25 | GO:0007017: microtubule-based process | 7.52E-04 |
| 26 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.23E-04 |
| 27 | GO:0009226: nucleotide-sugar biosynthetic process | 9.23E-04 |
| 28 | GO:2001141: regulation of RNA biosynthetic process | 9.23E-04 |
| 29 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.23E-04 |
| 30 | GO:0010239: chloroplast mRNA processing | 9.23E-04 |
| 31 | GO:0090307: mitotic spindle assembly | 9.23E-04 |
| 32 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 9.23E-04 |
| 33 | GO:0006145: purine nucleobase catabolic process | 9.23E-04 |
| 34 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 9.23E-04 |
| 35 | GO:0031122: cytoplasmic microtubule organization | 1.22E-03 |
| 36 | GO:0006021: inositol biosynthetic process | 1.22E-03 |
| 37 | GO:0010021: amylopectin biosynthetic process | 1.22E-03 |
| 38 | GO:0009765: photosynthesis, light harvesting | 1.22E-03 |
| 39 | GO:0009791: post-embryonic development | 1.52E-03 |
| 40 | GO:0016558: protein import into peroxisome matrix | 1.56E-03 |
| 41 | GO:0016123: xanthophyll biosynthetic process | 1.56E-03 |
| 42 | GO:0016120: carotene biosynthetic process | 1.56E-03 |
| 43 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.91E-03 |
| 44 | GO:0000741: karyogamy | 1.91E-03 |
| 45 | GO:0046855: inositol phosphate dephosphorylation | 1.91E-03 |
| 46 | GO:0042372: phylloquinone biosynthetic process | 2.30E-03 |
| 47 | GO:0010189: vitamin E biosynthetic process | 2.30E-03 |
| 48 | GO:0006400: tRNA modification | 2.70E-03 |
| 49 | GO:1900056: negative regulation of leaf senescence | 2.70E-03 |
| 50 | GO:0018298: protein-chromophore linkage | 3.04E-03 |
| 51 | GO:0030091: protein repair | 3.13E-03 |
| 52 | GO:0007568: aging | 3.51E-03 |
| 53 | GO:0010112: regulation of systemic acquired resistance | 4.05E-03 |
| 54 | GO:0006098: pentose-phosphate shunt | 4.05E-03 |
| 55 | GO:0048507: meristem development | 4.05E-03 |
| 56 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.54E-03 |
| 57 | GO:0009658: chloroplast organization | 4.83E-03 |
| 58 | GO:0010114: response to red light | 4.95E-03 |
| 59 | GO:0045036: protein targeting to chloroplast | 5.05E-03 |
| 60 | GO:0006879: cellular iron ion homeostasis | 5.58E-03 |
| 61 | GO:0006352: DNA-templated transcription, initiation | 5.58E-03 |
| 62 | GO:0009773: photosynthetic electron transport in photosystem I | 5.58E-03 |
| 63 | GO:0006415: translational termination | 5.58E-03 |
| 64 | GO:0006790: sulfur compound metabolic process | 6.13E-03 |
| 65 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.13E-03 |
| 66 | GO:0080167: response to karrikin | 6.34E-03 |
| 67 | GO:0010628: positive regulation of gene expression | 6.70E-03 |
| 68 | GO:0009725: response to hormone | 6.70E-03 |
| 69 | GO:0006094: gluconeogenesis | 6.70E-03 |
| 70 | GO:0009767: photosynthetic electron transport chain | 6.70E-03 |
| 71 | GO:2000012: regulation of auxin polar transport | 6.70E-03 |
| 72 | GO:0015979: photosynthesis | 7.50E-03 |
| 73 | GO:0019853: L-ascorbic acid biosynthetic process | 7.89E-03 |
| 74 | GO:0046854: phosphatidylinositol phosphorylation | 7.89E-03 |
| 75 | GO:0006863: purine nucleobase transport | 8.51E-03 |
| 76 | GO:0080147: root hair cell development | 9.15E-03 |
| 77 | GO:0006396: RNA processing | 9.78E-03 |
| 78 | GO:0006418: tRNA aminoacylation for protein translation | 9.80E-03 |
| 79 | GO:0048511: rhythmic process | 1.05E-02 |
| 80 | GO:0016226: iron-sulfur cluster assembly | 1.12E-02 |
| 81 | GO:0080092: regulation of pollen tube growth | 1.12E-02 |
| 82 | GO:0016117: carotenoid biosynthetic process | 1.33E-02 |
| 83 | GO:0010197: polar nucleus fusion | 1.49E-02 |
| 84 | GO:0048868: pollen tube development | 1.49E-02 |
| 85 | GO:0007018: microtubule-based movement | 1.56E-02 |
| 86 | GO:0042752: regulation of circadian rhythm | 1.56E-02 |
| 87 | GO:0019252: starch biosynthetic process | 1.64E-02 |
| 88 | GO:0008654: phospholipid biosynthetic process | 1.64E-02 |
| 89 | GO:0006635: fatty acid beta-oxidation | 1.72E-02 |
| 90 | GO:0010193: response to ozone | 1.72E-02 |
| 91 | GO:0016032: viral process | 1.81E-02 |
| 92 | GO:0010468: regulation of gene expression | 1.97E-02 |
| 93 | GO:0006464: cellular protein modification process | 1.98E-02 |
| 94 | GO:0001666: response to hypoxia | 2.24E-02 |
| 95 | GO:0009816: defense response to bacterium, incompatible interaction | 2.33E-02 |
| 96 | GO:0048481: plant ovule development | 2.71E-02 |
| 97 | GO:0009817: defense response to fungus, incompatible interaction | 2.71E-02 |
| 98 | GO:0055085: transmembrane transport | 2.90E-02 |
| 99 | GO:0006457: protein folding | 2.97E-02 |
| 100 | GO:0009910: negative regulation of flower development | 3.00E-02 |
| 101 | GO:0009637: response to blue light | 3.20E-02 |
| 102 | GO:0009744: response to sucrose | 3.84E-02 |
| 103 | GO:0009644: response to high light intensity | 4.06E-02 |
| 104 | GO:0032259: methylation | 4.46E-02 |
| 105 | GO:0006397: mRNA processing | 4.85E-02 |
| 106 | GO:0010224: response to UV-B | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 6 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.75E-04 |
| 7 | GO:0004830: tryptophan-tRNA ligase activity | 1.75E-04 |
| 8 | GO:0030941: chloroplast targeting sequence binding | 1.75E-04 |
| 9 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.75E-04 |
| 10 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.75E-04 |
| 11 | GO:0004813: alanine-tRNA ligase activity | 1.75E-04 |
| 12 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 3.36E-04 |
| 13 | GO:0019156: isoamylase activity | 3.96E-04 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.96E-04 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.96E-04 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.96E-04 |
| 17 | GO:0016491: oxidoreductase activity | 5.26E-04 |
| 18 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 6.47E-04 |
| 19 | GO:0004751: ribose-5-phosphate isomerase activity | 6.47E-04 |
| 20 | GO:0032947: protein complex scaffold | 6.47E-04 |
| 21 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.47E-04 |
| 22 | GO:0016149: translation release factor activity, codon specific | 9.23E-04 |
| 23 | GO:0048027: mRNA 5'-UTR binding | 9.23E-04 |
| 24 | GO:0022891: substrate-specific transmembrane transporter activity | 9.77E-04 |
| 25 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.22E-03 |
| 26 | GO:0001053: plastid sigma factor activity | 1.22E-03 |
| 27 | GO:0051861: glycolipid binding | 1.22E-03 |
| 28 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.22E-03 |
| 29 | GO:0016987: sigma factor activity | 1.22E-03 |
| 30 | GO:0043015: gamma-tubulin binding | 1.22E-03 |
| 31 | GO:0043495: protein anchor | 1.22E-03 |
| 32 | GO:0051011: microtubule minus-end binding | 1.56E-03 |
| 33 | GO:0048038: quinone binding | 1.63E-03 |
| 34 | GO:0004556: alpha-amylase activity | 1.91E-03 |
| 35 | GO:0004462: lactoylglutathione lyase activity | 1.91E-03 |
| 36 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.91E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 1.91E-03 |
| 38 | GO:0004559: alpha-mannosidase activity | 2.30E-03 |
| 39 | GO:0008195: phosphatidate phosphatase activity | 2.30E-03 |
| 40 | GO:0015631: tubulin binding | 2.30E-03 |
| 41 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.30E-03 |
| 42 | GO:0016168: chlorophyll binding | 2.47E-03 |
| 43 | GO:0004519: endonuclease activity | 2.48E-03 |
| 44 | GO:0019899: enzyme binding | 2.70E-03 |
| 45 | GO:0003747: translation release factor activity | 4.05E-03 |
| 46 | GO:0005381: iron ion transmembrane transporter activity | 4.54E-03 |
| 47 | GO:0000049: tRNA binding | 6.13E-03 |
| 48 | GO:0003777: microtubule motor activity | 7.38E-03 |
| 49 | GO:0031625: ubiquitin protein ligase binding | 7.38E-03 |
| 50 | GO:0051536: iron-sulfur cluster binding | 9.15E-03 |
| 51 | GO:0003954: NADH dehydrogenase activity | 9.15E-03 |
| 52 | GO:0005528: FK506 binding | 9.15E-03 |
| 53 | GO:0005345: purine nucleobase transmembrane transporter activity | 9.80E-03 |
| 54 | GO:0004176: ATP-dependent peptidase activity | 1.05E-02 |
| 55 | GO:0003727: single-stranded RNA binding | 1.26E-02 |
| 56 | GO:0004812: aminoacyl-tRNA ligase activity | 1.33E-02 |
| 57 | GO:0008080: N-acetyltransferase activity | 1.49E-02 |
| 58 | GO:0010181: FMN binding | 1.56E-02 |
| 59 | GO:0004872: receptor activity | 1.64E-02 |
| 60 | GO:0005200: structural constituent of cytoskeleton | 2.06E-02 |
| 61 | GO:0008483: transaminase activity | 2.06E-02 |
| 62 | GO:0016597: amino acid binding | 2.15E-02 |
| 63 | GO:0003723: RNA binding | 2.44E-02 |
| 64 | GO:0008168: methyltransferase activity | 2.46E-02 |
| 65 | GO:0050897: cobalt ion binding | 3.00E-02 |
| 66 | GO:0008233: peptidase activity | 3.11E-02 |
| 67 | GO:0003993: acid phosphatase activity | 3.31E-02 |
| 68 | GO:0061630: ubiquitin protein ligase activity | 3.33E-02 |
| 69 | GO:0043621: protein self-association | 4.06E-02 |
| 70 | GO:0005198: structural molecule activity | 4.17E-02 |
| 71 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.28E-02 |
| 72 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.74E-02 |
| 73 | GO:0009055: electron carrier activity | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.82E-23 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 7.09E-10 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 6.68E-08 |
| 5 | GO:0030286: dynein complex | 2.35E-05 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.06E-04 |
| 7 | GO:0031969: chloroplast membrane | 2.13E-04 |
| 8 | GO:0008274: gamma-tubulin ring complex | 3.96E-04 |
| 9 | GO:0031304: intrinsic component of mitochondrial inner membrane | 3.96E-04 |
| 10 | GO:0030095: chloroplast photosystem II | 4.96E-04 |
| 11 | GO:0031977: thylakoid lumen | 5.59E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 7.52E-04 |
| 13 | GO:0000923: equatorial microtubule organizing center | 9.23E-04 |
| 14 | GO:0009523: photosystem II | 1.52E-03 |
| 15 | GO:0019898: extrinsic component of membrane | 1.52E-03 |
| 16 | GO:0009534: chloroplast thylakoid | 1.69E-03 |
| 17 | GO:0009570: chloroplast stroma | 2.42E-03 |
| 18 | GO:0031359: integral component of chloroplast outer membrane | 2.70E-03 |
| 19 | GO:0000922: spindle pole | 4.05E-03 |
| 20 | GO:0042644: chloroplast nucleoid | 4.05E-03 |
| 21 | GO:0016324: apical plasma membrane | 5.05E-03 |
| 22 | GO:0090404: pollen tube tip | 5.58E-03 |
| 23 | GO:0009508: plastid chromosome | 6.70E-03 |
| 24 | GO:0009579: thylakoid | 6.86E-03 |
| 25 | GO:0009941: chloroplast envelope | 8.41E-03 |
| 26 | GO:0005875: microtubule associated complex | 8.51E-03 |
| 27 | GO:0042651: thylakoid membrane | 9.80E-03 |
| 28 | GO:0009532: plastid stroma | 1.05E-02 |
| 29 | GO:0043231: intracellular membrane-bounded organelle | 1.18E-02 |
| 30 | GO:0005871: kinesin complex | 1.33E-02 |
| 31 | GO:0005778: peroxisomal membrane | 2.06E-02 |
| 32 | GO:0009295: nucleoid | 2.06E-02 |
| 33 | GO:0030529: intracellular ribonucleoprotein complex | 2.24E-02 |
| 34 | GO:0009707: chloroplast outer membrane | 2.71E-02 |
| 35 | GO:0005874: microtubule | 3.06E-02 |