Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G10230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015813: L-glutamate transport0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0046460: neutral lipid biosynthetic process0.00E+00
4GO:0009583: detection of light stimulus0.00E+00
5GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0032928: regulation of superoxide anion generation0.00E+00
8GO:0046294: formaldehyde catabolic process0.00E+00
9GO:0018316: peptide cross-linking via L-cystine0.00E+00
10GO:0036172: thiamine salvage0.00E+00
11GO:0009661: chromoplast organization0.00E+00
12GO:0010343: singlet oxygen-mediated programmed cell death4.28E-06
13GO:0009658: chloroplast organization1.41E-05
14GO:0009902: chloroplast relocation6.10E-05
15GO:0015743: malate transport6.10E-05
16GO:0010117: photoprotection9.62E-05
17GO:0046283: anthocyanin-containing compound metabolic process9.62E-05
18GO:0009903: chloroplast avoidance movement1.90E-04
19GO:0009396: folic acid-containing compound biosynthetic process2.48E-04
20GO:0019343: cysteine biosynthetic process via cystathionine3.07E-04
21GO:0010362: negative regulation of anion channel activity by blue light3.07E-04
22GO:0071266: 'de novo' L-methionine biosynthetic process3.07E-04
23GO:1902265: abscisic acid homeostasis3.07E-04
24GO:0019346: transsulfuration3.07E-04
25GO:0072387: flavin adenine dinucleotide metabolic process3.07E-04
26GO:0071454: cellular response to anoxia3.07E-04
27GO:0071461: cellular response to redox state3.07E-04
28GO:0006430: lysyl-tRNA aminoacylation3.07E-04
29GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.07E-04
30GO:0006508: proteolysis3.69E-04
31GO:0051603: proteolysis involved in cellular protein catabolic process4.09E-04
32GO:0009638: phototropism5.47E-04
33GO:0035999: tetrahydrofolate interconversion5.47E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly6.71E-04
35GO:1901529: positive regulation of anion channel activity6.71E-04
36GO:0080005: photosystem stoichiometry adjustment6.71E-04
37GO:0010617: circadian regulation of calcium ion oscillation6.71E-04
38GO:2000030: regulation of response to red or far red light6.71E-04
39GO:0007154: cell communication6.71E-04
40GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation6.71E-04
41GO:0006898: receptor-mediated endocytosis6.71E-04
42GO:0099402: plant organ development6.71E-04
43GO:1904143: positive regulation of carotenoid biosynthetic process6.71E-04
44GO:0080183: response to photooxidative stress6.71E-04
45GO:0009257: 10-formyltetrahydrofolate biosynthetic process6.71E-04
46GO:0043100: pyrimidine nucleobase salvage6.71E-04
47GO:0016122: xanthophyll metabolic process6.71E-04
48GO:0080153: negative regulation of reductive pentose-phosphate cycle6.71E-04
49GO:0009767: photosynthetic electron transport chain9.50E-04
50GO:0031022: nuclear migration along microfilament1.09E-03
51GO:1902448: positive regulation of shade avoidance1.09E-03
52GO:1901562: response to paraquat1.09E-03
53GO:1901672: positive regulation of systemic acquired resistance1.09E-03
54GO:0009150: purine ribonucleotide metabolic process1.09E-03
55GO:0071492: cellular response to UV-A1.09E-03
56GO:0006696: ergosterol biosynthetic process1.09E-03
57GO:0071836: nectar secretion1.09E-03
58GO:0044375: regulation of peroxisome size1.09E-03
59GO:0009637: response to blue light1.22E-03
60GO:0015729: oxaloacetate transport1.56E-03
61GO:0046653: tetrahydrofolate metabolic process1.56E-03
62GO:0009647: skotomorphogenesis1.56E-03
63GO:0033014: tetrapyrrole biosynthetic process1.56E-03
64GO:0009113: purine nucleobase biosynthetic process1.56E-03
65GO:0009399: nitrogen fixation1.56E-03
66GO:1901332: negative regulation of lateral root development1.56E-03
67GO:0009963: positive regulation of flavonoid biosynthetic process1.56E-03
68GO:2001141: regulation of RNA biosynthetic process1.56E-03
69GO:0010371: regulation of gibberellin biosynthetic process1.56E-03
70GO:0009640: photomorphogenesis1.68E-03
71GO:0016226: iron-sulfur cluster assembly1.95E-03
72GO:0009765: photosynthesis, light harvesting2.09E-03
73GO:0051567: histone H3-K9 methylation2.09E-03
74GO:0009649: entrainment of circadian clock2.09E-03
75GO:0071483: cellular response to blue light2.09E-03
76GO:1902347: response to strigolactone2.09E-03
77GO:0034613: cellular protein localization2.09E-03
78GO:0010021: amylopectin biosynthetic process2.09E-03
79GO:0006542: glutamine biosynthetic process2.09E-03
80GO:0070534: protein K63-linked ubiquitination2.09E-03
81GO:0019676: ammonia assimilation cycle2.09E-03
82GO:0071486: cellular response to high light intensity2.09E-03
83GO:0000304: response to singlet oxygen2.67E-03
84GO:0071423: malate transmembrane transport2.67E-03
85GO:0016120: carotene biosynthetic process2.67E-03
86GO:0009904: chloroplast accumulation movement2.67E-03
87GO:0010236: plastoquinone biosynthetic process2.67E-03
88GO:0045038: protein import into chloroplast thylakoid membrane2.67E-03
89GO:0009229: thiamine diphosphate biosynthetic process2.67E-03
90GO:0010118: stomatal movement2.70E-03
91GO:0055114: oxidation-reduction process3.04E-03
92GO:0006814: sodium ion transport3.13E-03
93GO:0006555: methionine metabolic process3.30E-03
94GO:0060918: auxin transport3.30E-03
95GO:0010190: cytochrome b6f complex assembly3.30E-03
96GO:0009117: nucleotide metabolic process3.30E-03
97GO:1901371: regulation of leaf morphogenesis3.30E-03
98GO:0016458: gene silencing3.30E-03
99GO:0009228: thiamine biosynthetic process3.30E-03
100GO:0006301: postreplication repair3.30E-03
101GO:0010304: PSII associated light-harvesting complex II catabolic process3.30E-03
102GO:0019509: L-methionine salvage from methylthioadenosine3.97E-03
103GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.97E-03
104GO:0034389: lipid particle organization3.97E-03
105GO:0010019: chloroplast-nucleus signaling pathway3.97E-03
106GO:0010310: regulation of hydrogen peroxide metabolic process3.97E-03
107GO:1900056: negative regulation of leaf senescence4.68E-03
108GO:0051510: regulation of unidimensional cell growth4.68E-03
109GO:0010038: response to metal ion4.68E-03
110GO:0050790: regulation of catalytic activity4.68E-03
111GO:0016126: sterol biosynthetic process5.19E-03
112GO:0048564: photosystem I assembly5.44E-03
113GO:0030091: protein repair5.44E-03
114GO:0009787: regulation of abscisic acid-activated signaling pathway5.44E-03
115GO:0009704: de-etiolation5.44E-03
116GO:0050821: protein stabilization5.44E-03
117GO:0009231: riboflavin biosynthetic process5.44E-03
118GO:0006102: isocitrate metabolic process5.44E-03
119GO:0016559: peroxisome fission5.44E-03
120GO:0015995: chlorophyll biosynthetic process6.11E-03
121GO:0071482: cellular response to light stimulus6.23E-03
122GO:0022900: electron transport chain6.23E-03
123GO:0015996: chlorophyll catabolic process6.23E-03
124GO:0044030: regulation of DNA methylation6.23E-03
125GO:0018298: protein-chromophore linkage6.77E-03
126GO:0098656: anion transmembrane transport7.07E-03
127GO:0009821: alkaloid biosynthetic process7.07E-03
128GO:0046916: cellular transition metal ion homeostasis7.07E-03
129GO:0019432: triglyceride biosynthetic process7.07E-03
130GO:0006783: heme biosynthetic process7.07E-03
131GO:0006779: porphyrin-containing compound biosynthetic process7.94E-03
132GO:0009098: leucine biosynthetic process7.94E-03
133GO:0010380: regulation of chlorophyll biosynthetic process7.94E-03
134GO:1900426: positive regulation of defense response to bacterium7.94E-03
135GO:0051555: flavonol biosynthetic process8.84E-03
136GO:0009688: abscisic acid biosynthetic process8.84E-03
137GO:0045036: protein targeting to chloroplast8.84E-03
138GO:0009641: shade avoidance8.84E-03
139GO:0006099: tricarboxylic acid cycle8.98E-03
140GO:0043085: positive regulation of catalytic activity9.79E-03
141GO:0008285: negative regulation of cell proliferation9.79E-03
142GO:0006879: cellular iron ion homeostasis9.79E-03
143GO:0006352: DNA-templated transcription, initiation9.79E-03
144GO:0018119: peptidyl-cysteine S-nitrosylation9.79E-03
145GO:0016485: protein processing9.79E-03
146GO:0006790: sulfur compound metabolic process1.08E-02
147GO:0005986: sucrose biosynthetic process1.18E-02
148GO:0030048: actin filament-based movement1.18E-02
149GO:0009785: blue light signaling pathway1.18E-02
150GO:0006108: malate metabolic process1.18E-02
151GO:0050826: response to freezing1.18E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process1.18E-02
153GO:0010075: regulation of meristem growth1.18E-02
154GO:0009644: response to high light intensity1.20E-02
155GO:0034605: cellular response to heat1.28E-02
156GO:0010207: photosystem II assembly1.28E-02
157GO:0007015: actin filament organization1.28E-02
158GO:0019253: reductive pentose-phosphate cycle1.28E-02
159GO:0009225: nucleotide-sugar metabolic process1.39E-02
160GO:0007031: peroxisome organization1.39E-02
161GO:0019853: L-ascorbic acid biosynthetic process1.39E-02
162GO:0006071: glycerol metabolic process1.50E-02
163GO:2000377: regulation of reactive oxygen species metabolic process1.62E-02
164GO:0006487: protein N-linked glycosylation1.62E-02
165GO:0008299: isoprenoid biosynthetic process1.74E-02
166GO:0006418: tRNA aminoacylation for protein translation1.74E-02
167GO:0010073: meristem maintenance1.74E-02
168GO:0006306: DNA methylation1.86E-02
169GO:0035556: intracellular signal transduction1.93E-02
170GO:0006730: one-carbon metabolic process1.98E-02
171GO:0009693: ethylene biosynthetic process2.11E-02
172GO:0010227: floral organ abscission2.11E-02
173GO:0006012: galactose metabolic process2.11E-02
174GO:0006817: phosphate ion transport2.24E-02
175GO:0016117: carotenoid biosynthetic process2.37E-02
176GO:0070417: cellular response to cold2.37E-02
177GO:0006520: cellular amino acid metabolic process2.64E-02
178GO:0006662: glycerol ether metabolic process2.64E-02
179GO:0010182: sugar mediated signaling pathway2.64E-02
180GO:0042752: regulation of circadian rhythm2.78E-02
181GO:0009646: response to absence of light2.78E-02
182GO:0009058: biosynthetic process2.83E-02
183GO:0019252: starch biosynthetic process2.92E-02
184GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.07E-02
185GO:0019761: glucosinolate biosynthetic process3.21E-02
186GO:0030163: protein catabolic process3.36E-02
187GO:1901657: glycosyl compound metabolic process3.36E-02
188GO:0005975: carbohydrate metabolic process3.46E-02
189GO:0006464: cellular protein modification process3.52E-02
190GO:0046686: response to cadmium ion3.61E-02
191GO:0007623: circadian rhythm3.69E-02
192GO:0010029: regulation of seed germination4.15E-02
193GO:0042128: nitrate assimilation4.31E-02
194GO:0010411: xyloglucan metabolic process4.48E-02
195GO:0048573: photoperiodism, flowering4.48E-02
196GO:0006950: response to stress4.48E-02
197GO:0048481: plant ovule development4.81E-02
198GO:0030244: cellulose biosynthetic process4.81E-02
199GO:0000160: phosphorelay signal transduction system4.98E-02
RankGO TermAdjusted P value
1GO:0047918: GDP-mannose 3,5-epimerase activity0.00E+00
2GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
3GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
4GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
5GO:0018738: S-formylglutathione hydrolase activity0.00E+00
6GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
7GO:0015205: nucleobase transmembrane transporter activity0.00E+00
8GO:0008170: N-methyltransferase activity0.00E+00
9GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity0.00E+00
12GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
13GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
14GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
15GO:0009008: DNA-methyltransferase activity0.00E+00
16GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity4.28E-06
17GO:0004477: methenyltetrahydrofolate cyclohydrolase activity4.28E-06
18GO:0004046: aminoacylase activity4.28E-06
19GO:0015367: oxoglutarate:malate antiporter activity4.28E-06
20GO:0010277: chlorophyllide a oxygenase [overall] activity1.52E-05
21GO:0004848: ureidoglycolate hydrolase activity1.52E-05
22GO:0000254: C-4 methylsterol oxidase activity3.40E-05
23GO:0009882: blue light photoreceptor activity3.40E-05
24GO:0004185: serine-type carboxypeptidase activity2.38E-04
25GO:0080079: cellobiose glucosidase activity3.07E-04
26GO:0004824: lysine-tRNA ligase activity3.07E-04
27GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity3.07E-04
28GO:0016783: sulfurtransferase activity3.07E-04
29GO:0004325: ferrochelatase activity3.07E-04
30GO:0004121: cystathionine beta-lyase activity3.07E-04
31GO:0051996: squalene synthase activity3.07E-04
32GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity3.07E-04
33GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.07E-04
34GO:0004123: cystathionine gamma-lyase activity3.07E-04
35GO:0046480: galactolipid galactosyltransferase activity3.07E-04
36GO:0046906: tetrapyrrole binding3.07E-04
37GO:0048038: quinone binding4.05E-04
38GO:0042802: identical protein binding4.48E-04
39GO:0071949: FAD binding4.63E-04
40GO:0033201: alpha-1,4-glucan synthase activity6.71E-04
41GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.71E-04
42GO:0050347: trans-octaprenyltranstransferase activity6.71E-04
43GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity6.71E-04
44GO:0004329: formate-tetrahydrofolate ligase activity6.71E-04
45GO:0004450: isocitrate dehydrogenase (NADP+) activity6.71E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.71E-04
47GO:0043425: bHLH transcription factor binding6.71E-04
48GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.71E-04
49GO:0008236: serine-type peptidase activity8.55E-04
50GO:0005315: inorganic phosphate transmembrane transporter activity9.50E-04
51GO:0004180: carboxypeptidase activity1.09E-03
52GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.09E-03
53GO:0046524: sucrose-phosphate synthase activity1.09E-03
54GO:0004373: glycogen (starch) synthase activity1.09E-03
55GO:0003962: cystathionine gamma-synthase activity1.09E-03
56GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.09E-03
57GO:0032947: protein complex scaffold1.09E-03
58GO:0004557: alpha-galactosidase activity1.09E-03
59GO:0003861: 3-isopropylmalate dehydratase activity1.09E-03
60GO:0003935: GTP cyclohydrolase II activity1.09E-03
61GO:0015131: oxaloacetate transmembrane transporter activity1.56E-03
62GO:0035529: NADH pyrophosphatase activity1.56E-03
63GO:0004792: thiosulfate sulfurtransferase activity1.56E-03
64GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.56E-03
65GO:0016851: magnesium chelatase activity1.56E-03
66GO:0008106: alcohol dehydrogenase (NADP+) activity1.56E-03
67GO:0047627: adenylylsulfatase activity1.56E-03
68GO:0004176: ATP-dependent peptidase activity1.78E-03
69GO:0051537: 2 iron, 2 sulfur cluster binding1.86E-03
70GO:0016987: sigma factor activity2.09E-03
71GO:0009011: starch synthase activity2.09E-03
72GO:0005313: L-glutamate transmembrane transporter activity2.09E-03
73GO:0001053: plastid sigma factor activity2.09E-03
74GO:0004356: glutamate-ammonia ligase activity2.67E-03
75GO:0016491: oxidoreductase activity3.14E-03
76GO:0004709: MAP kinase kinase kinase activity3.30E-03
77GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.30E-03
78GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity3.30E-03
79GO:0000293: ferric-chelate reductase activity3.30E-03
80GO:0004144: diacylglycerol O-acyltransferase activity3.97E-03
81GO:0030060: L-malate dehydrogenase activity3.97E-03
82GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.97E-03
83GO:0016157: sucrose synthase activity3.97E-03
84GO:0008237: metallopeptidase activity4.62E-03
85GO:0016621: cinnamoyl-CoA reductase activity4.68E-03
86GO:0019899: enzyme binding4.68E-03
87GO:0015140: malate transmembrane transporter activity4.68E-03
88GO:0005506: iron ion binding5.36E-03
89GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity5.44E-03
90GO:0004034: aldose 1-epimerase activity5.44E-03
91GO:0046914: transition metal ion binding6.23E-03
92GO:0003824: catalytic activity6.64E-03
93GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.07E-03
94GO:0004222: metalloendopeptidase activity7.47E-03
95GO:0016844: strictosidine synthase activity7.94E-03
96GO:0008378: galactosyltransferase activity1.08E-02
97GO:0046872: metal ion binding1.14E-02
98GO:0031072: heat shock protein binding1.18E-02
99GO:0000155: phosphorelay sensor kinase activity1.18E-02
100GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.28E-02
101GO:0051287: NAD binding1.35E-02
102GO:0016887: ATPase activity1.45E-02
103GO:0051536: iron-sulfur cluster binding1.62E-02
104GO:0051082: unfolded protein binding2.14E-02
105GO:0008514: organic anion transmembrane transporter activity2.24E-02
106GO:0047134: protein-disulfide reductase activity2.37E-02
107GO:0004812: aminoacyl-tRNA ligase activity2.37E-02
108GO:0016787: hydrolase activity2.40E-02
109GO:0008080: N-acetyltransferase activity2.64E-02
110GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.75E-02
111GO:0016853: isomerase activity2.78E-02
112GO:0050662: coenzyme binding2.78E-02
113GO:0010181: FMN binding2.78E-02
114GO:0004791: thioredoxin-disulfide reductase activity2.78E-02
115GO:0030170: pyridoxal phosphate binding2.97E-02
116GO:0005507: copper ion binding3.00E-02
117GO:0004197: cysteine-type endopeptidase activity3.21E-02
118GO:0004672: protein kinase activity3.27E-02
119GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.36E-02
120GO:0008483: transaminase activity3.67E-02
121GO:0016413: O-acetyltransferase activity3.83E-02
122GO:0016168: chlorophyll binding4.15E-02
123GO:0004806: triglyceride lipase activity4.48E-02
124GO:0030247: polysaccharide binding4.48E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.35E-22
2GO:0009535: chloroplast thylakoid membrane2.29E-08
3GO:0031969: chloroplast membrane2.28E-07
4GO:0009706: chloroplast inner membrane8.40E-06
5GO:0009536: plastid1.14E-05
6GO:0000152: nuclear ubiquitin ligase complex3.07E-04
7GO:0031972: chloroplast intermembrane space3.07E-04
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.63E-04
9GO:0016604: nuclear body5.47E-04
10GO:0080085: signal recognition particle, chloroplast targeting6.71E-04
11GO:0005773: vacuole7.52E-04
12GO:0005764: lysosome1.07E-03
13GO:0016605: PML body1.09E-03
14GO:0009941: chloroplast envelope1.32E-03
15GO:0042651: thylakoid membrane1.62E-03
16GO:0009526: plastid envelope2.09E-03
17GO:0009517: PSII associated light-harvesting complex II2.09E-03
18GO:0031372: UBC13-MMS2 complex2.09E-03
19GO:0055035: plastid thylakoid membrane2.67E-03
20GO:0009570: chloroplast stroma3.51E-03
21GO:0031359: integral component of chloroplast outer membrane4.68E-03
22GO:0031982: vesicle5.44E-03
23GO:0009501: amyloplast5.44E-03
24GO:0005779: integral component of peroxisomal membrane6.23E-03
25GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.23E-03
26GO:0005811: lipid particle6.23E-03
27GO:0005759: mitochondrial matrix6.85E-03
28GO:0043234: protein complex1.50E-02
29GO:0009532: plastid stroma1.86E-02
30GO:0005777: peroxisome2.18E-02
31GO:0009534: chloroplast thylakoid2.36E-02
32GO:0010287: plastoglobule2.54E-02
33GO:0005623: cell2.75E-02
34GO:0009523: photosystem II2.92E-02
35GO:0005778: peroxisomal membrane3.67E-02
36GO:0005615: extracellular space4.13E-02
37GO:0009707: chloroplast outer membrane4.81E-02
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Gene type



Gene DE type