co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0030155: regulation of cell adhesion	0.00E+00
9	GO:0019323: pentose catabolic process	0.00E+00
10	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
11	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
12	GO:0032544: plastid translation	3.01E-12
13	GO:0006412: translation	8.82E-11
14	GO:0009735: response to cytokinin	1.38E-10
15	GO:0042254: ribosome biogenesis	1.76E-09
16	GO:0015979: photosynthesis	1.35E-07
17	GO:0009409: response to cold	5.60E-06
18	GO:0009773: photosynthetic electron transport in photosystem I	2.49E-05
19	GO:0005983: starch catabolic process	3.13E-05
20	GO:0010021: amylopectin biosynthetic process	4.54E-05
21	GO:0019464: glycine decarboxylation via glycine cleavage system	4.54E-05
22	GO:0010196: nonphotochemical quenching	1.90E-04
23	GO:0005978: glycogen biosynthetic process	2.41E-04
24	GO:0043489: RNA stabilization	2.57E-04
25	GO:0044262: cellular carbohydrate metabolic process	2.57E-04
26	GO:0000023: maltose metabolic process	2.57E-04
27	GO:0000025: maltose catabolic process	2.57E-04
28	GO:0005980: glycogen catabolic process	2.57E-04
29	GO:0019252: starch biosynthetic process	2.66E-04
30	GO:0042742: defense response to bacterium	2.69E-04
31	GO:0010206: photosystem II repair	3.60E-04
32	GO:0009658: chloroplast organization	4.03E-04
33	GO:0005982: starch metabolic process	4.27E-04
34	GO:0010027: thylakoid membrane organization	4.74E-04
35	GO:0005976: polysaccharide metabolic process	5.68E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.68E-04
37	GO:0010270: photosystem II oxygen evolving complex assembly	5.68E-04
38	GO:0009817: defense response to fungus, incompatible interaction	6.64E-04
39	GO:0046686: response to cadmium ion	8.15E-04
40	GO:0009266: response to temperature stimulus	8.40E-04
41	GO:0006518: peptide metabolic process	9.22E-04
42	GO:0010623: programmed cell death involved in cell development	9.22E-04
43	GO:0035436: triose phosphate transmembrane transport	9.22E-04
44	GO:0048281: inflorescence morphogenesis	9.22E-04
45	GO:0006000: fructose metabolic process	9.22E-04
46	GO:0007623: circadian rhythm	1.04E-03
47	GO:0010025: wax biosynthetic process	1.04E-03
48	GO:0006289: nucleotide-excision repair	1.15E-03
49	GO:0006165: nucleoside diphosphate phosphorylation	1.32E-03
50	GO:0006228: UTP biosynthetic process	1.32E-03
51	GO:0010148: transpiration	1.32E-03
52	GO:0010731: protein glutathionylation	1.32E-03
53	GO:0006424: glutamyl-tRNA aminoacylation	1.32E-03
54	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.32E-03
55	GO:1902358: sulfate transmembrane transport	1.32E-03
56	GO:0006241: CTP biosynthetic process	1.32E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.32E-03
58	GO:0030245: cellulose catabolic process	1.52E-03
59	GO:0010017: red or far-red light signaling pathway	1.52E-03
60	GO:0010508: positive regulation of autophagy	1.76E-03
61	GO:0006546: glycine catabolic process	1.76E-03
62	GO:0015713: phosphoglycerate transport	1.76E-03
63	GO:0010037: response to carbon dioxide	1.76E-03
64	GO:0006808: regulation of nitrogen utilization	1.76E-03
65	GO:0015976: carbon utilization	1.76E-03
66	GO:0010023: proanthocyanidin biosynthetic process	1.76E-03
67	GO:0009765: photosynthesis, light harvesting	1.76E-03
68	GO:0006109: regulation of carbohydrate metabolic process	1.76E-03
69	GO:0006183: GTP biosynthetic process	1.76E-03
70	GO:0045727: positive regulation of translation	1.76E-03
71	GO:0010600: regulation of auxin biosynthetic process	1.76E-03
72	GO:2000122: negative regulation of stomatal complex development	1.76E-03
73	GO:0006544: glycine metabolic process	2.25E-03
74	GO:0032543: mitochondrial translation	2.25E-03
75	GO:0006461: protein complex assembly	2.25E-03
76	GO:0009643: photosynthetic acclimation	2.77E-03
77	GO:0006563: L-serine metabolic process	2.77E-03
78	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.77E-03
79	GO:0000470: maturation of LSU-rRNA	2.77E-03
80	GO:0009913: epidermal cell differentiation	2.77E-03
81	GO:0006828: manganese ion transport	2.77E-03
82	GO:1901259: chloroplast rRNA processing	3.33E-03
83	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.33E-03
84	GO:0009955: adaxial/abaxial pattern specification	3.33E-03
85	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.33E-03
86	GO:0045454: cell redox homeostasis	3.69E-03
87	GO:0070370: cellular heat acclimation	3.93E-03
88	GO:0008272: sulfate transport	3.93E-03
89	GO:0009645: response to low light intensity stimulus	3.93E-03
90	GO:0010103: stomatal complex morphogenesis	3.93E-03
91	GO:0010161: red light signaling pathway	3.93E-03
92	GO:0009704: de-etiolation	4.56E-03
93	GO:0010928: regulation of auxin mediated signaling pathway	4.56E-03
94	GO:0015995: chlorophyll biosynthetic process	4.74E-03
95	GO:0009657: plastid organization	5.22E-03
96	GO:0006002: fructose 6-phosphate metabolic process	5.22E-03
97	GO:0001558: regulation of cell growth	5.22E-03
98	GO:0006783: heme biosynthetic process	5.92E-03
99	GO:0035999: tetrahydrofolate interconversion	6.64E-03
100	GO:0042761: very long-chain fatty acid biosynthetic process	6.64E-03
101	GO:0034599: cellular response to oxidative stress	6.96E-03
102	GO:0006782: protoporphyrinogen IX biosynthetic process	7.40E-03
103	GO:0043085: positive regulation of catalytic activity	8.19E-03
104	GO:0006415: translational termination	8.19E-03
105	GO:0009750: response to fructose	8.19E-03
106	GO:0018119: peptidyl-cysteine S-nitrosylation	8.19E-03
107	GO:0016485: protein processing	8.19E-03
108	GO:0006816: calcium ion transport	8.19E-03
109	GO:0045037: protein import into chloroplast stroma	9.00E-03
110	GO:0009644: response to high light intensity	9.29E-03
111	GO:0010102: lateral root morphogenesis	9.85E-03
112	GO:0009718: anthocyanin-containing compound biosynthetic process	9.85E-03
113	GO:0006094: gluconeogenesis	9.85E-03
114	GO:0009767: photosynthetic electron transport chain	9.85E-03
115	GO:0005986: sucrose biosynthetic process	9.85E-03
116	GO:0010207: photosystem II assembly	1.07E-02
117	GO:0019253: reductive pentose-phosphate cycle	1.07E-02
118	GO:0010020: chloroplast fission	1.07E-02
119	GO:0006979: response to oxidative stress	1.12E-02
120	GO:0009585: red, far-red light phototransduction	1.16E-02
121	GO:0000027: ribosomal large subunit assembly	1.35E-02
122	GO:0009944: polarity specification of adaxial/abaxial axis	1.35E-02
123	GO:0007017: microtubule-based process	1.45E-02
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.45E-02
125	GO:0051302: regulation of cell division	1.45E-02
126	GO:0006418: tRNA aminoacylation for protein translation	1.45E-02
127	GO:0016114: terpenoid biosynthetic process	1.55E-02
128	GO:0035428: hexose transmembrane transport	1.65E-02
129	GO:0055114: oxidation-reduction process	1.75E-02
130	GO:0009686: gibberellin biosynthetic process	1.76E-02
131	GO:0009411: response to UV	1.76E-02
132	GO:0001944: vasculature development	1.76E-02
133	GO:0010089: xylem development	1.86E-02
134	GO:0006284: base-excision repair	1.86E-02
135	GO:0042335: cuticle development	2.09E-02
136	GO:0006810: transport	2.13E-02
137	GO:0006662: glycerol ether metabolic process	2.20E-02
138	GO:0046323: glucose import	2.20E-02
139	GO:0015986: ATP synthesis coupled proton transport	2.32E-02
140	GO:0008152: metabolic process	2.37E-02
141	GO:0009790: embryo development	2.42E-02
142	GO:0048825: cotyledon development	2.43E-02
143	GO:0000302: response to reactive oxygen species	2.56E-02
144	GO:0030163: protein catabolic process	2.80E-02
145	GO:0016311: dephosphorylation	3.87E-02
146	GO:0018298: protein-chromophore linkage	4.01E-02
147	GO:0048481: plant ovule development	4.01E-02
148	GO:0000160: phosphorelay signal transduction system	4.16E-02
149	GO:0009813: flavonoid biosynthetic process	4.16E-02
150	GO:0010218: response to far red light	4.30E-02
151	GO:0009631: cold acclimation	4.45E-02
152	GO:0010119: regulation of stomatal movement	4.45E-02
153	GO:0045087: innate immune response	4.75E-02
154	GO:0009637: response to blue light	4.75E-02
155	GO:0009853: photorespiration	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0019843: rRNA binding	5.00E-19
10	GO:0003735: structural constituent of ribosome	1.48E-13
11	GO:0008266: poly(U) RNA binding	1.14E-06
12	GO:0051920: peroxiredoxin activity	2.20E-06
13	GO:0016209: antioxidant activity	5.41E-06
14	GO:0004134: 4-alpha-glucanotransferase activity	2.57E-04
15	GO:0004645: phosphorylase activity	2.57E-04
16	GO:0004853: uroporphyrinogen decarboxylase activity	2.57E-04
17	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.57E-04
18	GO:0019203: carbohydrate phosphatase activity	2.57E-04
19	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.57E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.57E-04
21	GO:0008184: glycogen phosphorylase activity	2.57E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.57E-04
23	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.57E-04
24	GO:0004856: xylulokinase activity	2.57E-04
25	GO:0009496: plastoquinol--plastocyanin reductase activity	2.57E-04
26	GO:0008967: phosphoglycolate phosphatase activity	5.68E-04
27	GO:0004618: phosphoglycerate kinase activity	5.68E-04
28	GO:0010297: heteropolysaccharide binding	5.68E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	5.68E-04
30	GO:0004750: ribulose-phosphate 3-epimerase activity	5.68E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.68E-04
32	GO:0018708: thiol S-methyltransferase activity	5.68E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.68E-04
34	GO:0004222: metalloendopeptidase activity	7.51E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	9.22E-04
36	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.22E-04
37	GO:0030267: glyoxylate reductase (NADP) activity	9.22E-04
38	GO:0071917: triose-phosphate transmembrane transporter activity	9.22E-04
39	GO:0004324: ferredoxin-NADP+ reductase activity	9.22E-04
40	GO:0043169: cation binding	9.22E-04
41	GO:0004373: glycogen (starch) synthase activity	9.22E-04
42	GO:0017150: tRNA dihydrouridine synthase activity	9.22E-04
43	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.22E-04
44	GO:0002161: aminoacyl-tRNA editing activity	9.22E-04
45	GO:0005504: fatty acid binding	9.22E-04
46	GO:0016149: translation release factor activity, codon specific	1.32E-03
47	GO:0004550: nucleoside diphosphate kinase activity	1.32E-03
48	GO:0043023: ribosomal large subunit binding	1.32E-03
49	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.32E-03
50	GO:0019201: nucleotide kinase activity	1.32E-03
51	GO:0008810: cellulase activity	1.65E-03
52	GO:0009011: starch synthase activity	1.76E-03
53	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.76E-03
54	GO:0042277: peptide binding	1.76E-03
55	GO:0015120: phosphoglycerate transmembrane transporter activity	1.76E-03
56	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.76E-03
57	GO:0019104: DNA N-glycosylase activity	1.76E-03
58	GO:0045430: chalcone isomerase activity	1.76E-03
59	GO:0019199: transmembrane receptor protein kinase activity	1.76E-03
60	GO:0004601: peroxidase activity	2.02E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.25E-03
62	GO:0004372: glycine hydroxymethyltransferase activity	2.25E-03
63	GO:0003959: NADPH dehydrogenase activity	2.25E-03
64	GO:0050662: coenzyme binding	2.43E-03
65	GO:2001070: starch binding	2.77E-03
66	GO:0004130: cytochrome-c peroxidase activity	2.77E-03
67	GO:0048038: quinone binding	2.79E-03
68	GO:0004017: adenylate kinase activity	3.33E-03
69	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.33E-03
70	GO:0004602: glutathione peroxidase activity	3.33E-03
71	GO:0004252: serine-type endopeptidase activity	4.23E-03
72	GO:0016168: chlorophyll binding	4.26E-03
73	GO:0008236: serine-type peptidase activity	4.99E-03
74	GO:0008271: secondary active sulfate transmembrane transporter activity	5.22E-03
75	GO:0015078: hydrogen ion transmembrane transporter activity	5.22E-03
76	GO:0016491: oxidoreductase activity	5.74E-03
77	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.92E-03
78	GO:0003747: translation release factor activity	5.92E-03
79	GO:0005384: manganese ion transmembrane transporter activity	6.64E-03
80	GO:0008047: enzyme activator activity	7.40E-03
81	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.58E-03
82	GO:0047372: acylglycerol lipase activity	8.19E-03
83	GO:0015386: potassium:proton antiporter activity	8.19E-03
84	GO:0000049: tRNA binding	9.00E-03
85	GO:0015116: sulfate transmembrane transporter activity	9.00E-03
86	GO:0004022: alcohol dehydrogenase (NAD) activity	9.85E-03
87	GO:0004089: carbonate dehydratase activity	9.85E-03
88	GO:0015095: magnesium ion transmembrane transporter activity	9.85E-03
89	GO:0031072: heat shock protein binding	9.85E-03
90	GO:0031409: pigment binding	1.25E-02
91	GO:0004857: enzyme inhibitor activity	1.35E-02
92	GO:0005528: FK506 binding	1.35E-02
93	GO:0015079: potassium ion transmembrane transporter activity	1.45E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	1.76E-02
95	GO:0047134: protein-disulfide reductase activity	1.97E-02
96	GO:0004812: aminoacyl-tRNA ligase activity	1.97E-02
97	GO:0001085: RNA polymerase II transcription factor binding	2.20E-02
98	GO:0030170: pyridoxal phosphate binding	2.30E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	2.32E-02
100	GO:0005355: glucose transmembrane transporter activity	2.32E-02
101	GO:0000156: phosphorelay response regulator activity	2.80E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.80E-02
103	GO:0003684: damaged DNA binding	2.93E-02
104	GO:0008237: metallopeptidase activity	3.06E-02
105	GO:0005200: structural constituent of cytoskeleton	3.06E-02
106	GO:0030247: polysaccharide binding	3.73E-02
107	GO:0016787: hydrolase activity	3.99E-02
108	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.45E-02
109	GO:0016788: hydrolase activity, acting on ester bonds	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	2.21E-70
5	GO:0009941: chloroplast envelope	9.03E-60
6	GO:0009570: chloroplast stroma	1.40E-58
7	GO:0009534: chloroplast thylakoid	1.39E-37
8	GO:0009535: chloroplast thylakoid membrane	3.69E-35
9	GO:0009579: thylakoid	1.78E-34
10	GO:0005840: ribosome	9.32E-14
11	GO:0010319: stromule	7.00E-10
12	GO:0010287: plastoglobule	7.39E-10
13	GO:0009543: chloroplast thylakoid lumen	9.49E-10
14	GO:0031977: thylakoid lumen	1.44E-08
15	GO:0009533: chloroplast stromal thylakoid	3.56E-06
16	GO:0016020: membrane	7.40E-06
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.09E-05
18	GO:0009706: chloroplast inner membrane	5.44E-05
19	GO:0048046: apoplast	7.90E-05
20	GO:0031969: chloroplast membrane	1.04E-04
21	GO:0009536: plastid	1.15E-04
22	GO:0009501: amyloplast	2.41E-04
23	GO:0009538: photosystem I reaction center	2.41E-04
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.57E-04
25	GO:0009523: photosystem II	2.66E-04
26	GO:0009295: nucleoid	4.07E-04
27	GO:0030093: chloroplast photosystem I	5.68E-04
28	GO:0000311: plastid large ribosomal subunit	6.59E-04
29	GO:0009508: plastid chromosome	7.47E-04
30	GO:0030095: chloroplast photosystem II	8.40E-04
31	GO:0005960: glycine cleavage complex	1.32E-03
32	GO:0009517: PSII associated light-harvesting complex II	1.76E-03
33	GO:0009512: cytochrome b6f complex	2.25E-03
34	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	2.77E-03
35	GO:0042644: chloroplast nucleoid	5.92E-03
36	GO:0045298: tubulin complex	5.92E-03
37	GO:0005763: mitochondrial small ribosomal subunit	5.92E-03
38	GO:0015934: large ribosomal subunit	6.07E-03
39	GO:0000312: plastid small ribosomal subunit	1.07E-02
40	GO:0030076: light-harvesting complex	1.16E-02
41	GO:0022625: cytosolic large ribosomal subunit	1.37E-02
42	GO:0042651: thylakoid membrane	1.45E-02
43	GO:0009654: photosystem II oxygen evolving complex	1.45E-02
44	GO:0015935: small ribosomal subunit	1.55E-02
45	GO:0009522: photosystem I	2.32E-02
46	GO:0019898: extrinsic component of membrane	2.43E-02
47	GO:0005759: mitochondrial matrix	2.61E-02
48	GO:0030529: intracellular ribonucleoprotein complex	3.32E-02
49	GO:0005667: transcription factor complex	3.59E-02
50	GO:0022626: cytosolic ribosome	4.05E-02