GO Enrichment Analysis of Co-expressed Genes with
AT3G09980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009661: chromoplast organization | 0.00E+00 |
| 2 | GO:0033317: pantothenate biosynthetic process from valine | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0080005: photosystem stoichiometry adjustment | 1.05E-06 |
| 5 | GO:0016120: carotene biosynthetic process | 2.79E-05 |
| 6 | GO:0010190: cytochrome b6f complex assembly | 4.18E-05 |
| 7 | GO:0009658: chloroplast organization | 8.01E-05 |
| 8 | GO:0031426: polycistronic mRNA processing | 1.46E-04 |
| 9 | GO:0071806: protein transmembrane transport | 1.46E-04 |
| 10 | GO:0042371: vitamin K biosynthetic process | 1.46E-04 |
| 11 | GO:0071461: cellular response to redox state | 1.46E-04 |
| 12 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 1.46E-04 |
| 13 | GO:0010362: negative regulation of anion channel activity by blue light | 1.46E-04 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 2.03E-04 |
| 15 | GO:0048314: embryo sac morphogenesis | 3.33E-04 |
| 16 | GO:0000256: allantoin catabolic process | 3.33E-04 |
| 17 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.33E-04 |
| 18 | GO:0034755: iron ion transmembrane transport | 3.33E-04 |
| 19 | GO:0009767: photosynthetic electron transport chain | 3.41E-04 |
| 20 | GO:0009644: response to high light intensity | 4.94E-04 |
| 21 | GO:0010136: ureide catabolic process | 5.47E-04 |
| 22 | GO:0009150: purine ribonucleotide metabolic process | 5.47E-04 |
| 23 | GO:0015940: pantothenate biosynthetic process | 5.47E-04 |
| 24 | GO:0006696: ergosterol biosynthetic process | 5.47E-04 |
| 25 | GO:0006013: mannose metabolic process | 5.47E-04 |
| 26 | GO:0050482: arachidonic acid secretion | 7.83E-04 |
| 27 | GO:2001141: regulation of RNA biosynthetic process | 7.83E-04 |
| 28 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.83E-04 |
| 29 | GO:0010371: regulation of gibberellin biosynthetic process | 7.83E-04 |
| 30 | GO:0071484: cellular response to light intensity | 7.83E-04 |
| 31 | GO:0010239: chloroplast mRNA processing | 7.83E-04 |
| 32 | GO:0006145: purine nucleobase catabolic process | 7.83E-04 |
| 33 | GO:0016117: carotenoid biosynthetic process | 8.94E-04 |
| 34 | GO:0009902: chloroplast relocation | 1.04E-03 |
| 35 | GO:0042274: ribosomal small subunit biogenesis | 1.04E-03 |
| 36 | GO:0009765: photosynthesis, light harvesting | 1.04E-03 |
| 37 | GO:0009791: post-embryonic development | 1.19E-03 |
| 38 | GO:0010117: photoprotection | 1.31E-03 |
| 39 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.31E-03 |
| 40 | GO:0035434: copper ion transmembrane transport | 1.31E-03 |
| 41 | GO:0016123: xanthophyll biosynthetic process | 1.31E-03 |
| 42 | GO:0006555: methionine metabolic process | 1.61E-03 |
| 43 | GO:0010019: chloroplast-nucleus signaling pathway | 1.93E-03 |
| 44 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.93E-03 |
| 45 | GO:0010038: response to metal ion | 2.27E-03 |
| 46 | GO:0048528: post-embryonic root development | 2.27E-03 |
| 47 | GO:1900056: negative regulation of leaf senescence | 2.27E-03 |
| 48 | GO:0018298: protein-chromophore linkage | 2.36E-03 |
| 49 | GO:0006605: protein targeting | 2.63E-03 |
| 50 | GO:0050821: protein stabilization | 2.63E-03 |
| 51 | GO:0006644: phospholipid metabolic process | 2.63E-03 |
| 52 | GO:0048564: photosystem I assembly | 2.63E-03 |
| 53 | GO:0032544: plastid translation | 3.00E-03 |
| 54 | GO:0071482: cellular response to light stimulus | 3.00E-03 |
| 55 | GO:0009821: alkaloid biosynthetic process | 3.40E-03 |
| 56 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 3.40E-03 |
| 57 | GO:0046916: cellular transition metal ion homeostasis | 3.40E-03 |
| 58 | GO:0000373: Group II intron splicing | 3.40E-03 |
| 59 | GO:0048507: meristem development | 3.40E-03 |
| 60 | GO:0009638: phototropism | 3.81E-03 |
| 61 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.81E-03 |
| 62 | GO:0045036: protein targeting to chloroplast | 4.23E-03 |
| 63 | GO:0031347: regulation of defense response | 4.63E-03 |
| 64 | GO:0043085: positive regulation of catalytic activity | 4.67E-03 |
| 65 | GO:1903507: negative regulation of nucleic acid-templated transcription | 4.67E-03 |
| 66 | GO:0006879: cellular iron ion homeostasis | 4.67E-03 |
| 67 | GO:0006352: DNA-templated transcription, initiation | 4.67E-03 |
| 68 | GO:0009773: photosynthetic electron transport in photosystem I | 4.67E-03 |
| 69 | GO:0008285: negative regulation of cell proliferation | 4.67E-03 |
| 70 | GO:0006790: sulfur compound metabolic process | 5.13E-03 |
| 71 | GO:0009725: response to hormone | 5.60E-03 |
| 72 | GO:0005986: sucrose biosynthetic process | 5.60E-03 |
| 73 | GO:0055114: oxidation-reduction process | 5.64E-03 |
| 74 | GO:0010207: photosystem II assembly | 6.09E-03 |
| 75 | GO:0090351: seedling development | 6.59E-03 |
| 76 | GO:0006071: glycerol metabolic process | 7.10E-03 |
| 77 | GO:0010073: meristem maintenance | 8.18E-03 |
| 78 | GO:0006825: copper ion transport | 8.18E-03 |
| 79 | GO:0007017: microtubule-based process | 8.18E-03 |
| 80 | GO:0051321: meiotic cell cycle | 8.73E-03 |
| 81 | GO:0006366: transcription from RNA polymerase II promoter | 8.73E-03 |
| 82 | GO:0016226: iron-sulfur cluster assembly | 9.30E-03 |
| 83 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 9.30E-03 |
| 84 | GO:0010227: floral organ abscission | 9.89E-03 |
| 85 | GO:0010118: stomatal movement | 1.17E-02 |
| 86 | GO:0042335: cuticle development | 1.17E-02 |
| 87 | GO:0006662: glycerol ether metabolic process | 1.24E-02 |
| 88 | GO:0007623: circadian rhythm | 1.27E-02 |
| 89 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.33E-02 |
| 90 | GO:0010468: regulation of gene expression | 1.52E-02 |
| 91 | GO:0030163: protein catabolic process | 1.57E-02 |
| 92 | GO:0016126: sterol biosynthetic process | 1.86E-02 |
| 93 | GO:0009816: defense response to bacterium, incompatible interaction | 1.94E-02 |
| 94 | GO:0006950: response to stress | 2.09E-02 |
| 95 | GO:0000160: phosphorelay signal transduction system | 2.33E-02 |
| 96 | GO:0006811: ion transport | 2.41E-02 |
| 97 | GO:0007568: aging | 2.49E-02 |
| 98 | GO:0009910: negative regulation of flower development | 2.49E-02 |
| 99 | GO:0000724: double-strand break repair via homologous recombination | 2.58E-02 |
| 100 | GO:0046777: protein autophosphorylation | 2.61E-02 |
| 101 | GO:0009637: response to blue light | 2.66E-02 |
| 102 | GO:0009853: photorespiration | 2.66E-02 |
| 103 | GO:0034599: cellular response to oxidative stress | 2.75E-02 |
| 104 | GO:0015979: photosynthesis | 2.79E-02 |
| 105 | GO:0030001: metal ion transport | 2.92E-02 |
| 106 | GO:0045454: cell redox homeostasis | 2.92E-02 |
| 107 | GO:0009640: photomorphogenesis | 3.19E-02 |
| 108 | GO:0009744: response to sucrose | 3.19E-02 |
| 109 | GO:0032259: methylation | 3.45E-02 |
| 110 | GO:0006364: rRNA processing | 3.94E-02 |
| 111 | GO:0009553: embryo sac development | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0004592: pantoate-beta-alanine ligase activity | 0.00E+00 |
| 4 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 5 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 6 | GO:0016851: magnesium chelatase activity | 9.15E-06 |
| 7 | GO:0048038: quinone binding | 9.39E-05 |
| 8 | GO:0030941: chloroplast targeting sequence binding | 1.46E-04 |
| 9 | GO:0046906: tetrapyrrole binding | 1.46E-04 |
| 10 | GO:0051996: squalene synthase activity | 1.46E-04 |
| 11 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.33E-04 |
| 12 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 5.47E-04 |
| 13 | GO:0050307: sucrose-phosphate phosphatase activity | 5.47E-04 |
| 14 | GO:0004180: carboxypeptidase activity | 5.47E-04 |
| 15 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 5.47E-04 |
| 16 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.47E-04 |
| 17 | GO:0032947: protein complex scaffold | 5.47E-04 |
| 18 | GO:0004848: ureidoglycolate hydrolase activity | 5.47E-04 |
| 19 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.47E-04 |
| 20 | GO:0009882: blue light photoreceptor activity | 7.83E-04 |
| 21 | GO:0047627: adenylylsulfatase activity | 7.83E-04 |
| 22 | GO:0000254: C-4 methylsterol oxidase activity | 7.83E-04 |
| 23 | GO:0048027: mRNA 5'-UTR binding | 7.83E-04 |
| 24 | GO:0008080: N-acetyltransferase activity | 1.03E-03 |
| 25 | GO:0001053: plastid sigma factor activity | 1.04E-03 |
| 26 | GO:0051861: glycolipid binding | 1.04E-03 |
| 27 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.04E-03 |
| 28 | GO:0016987: sigma factor activity | 1.04E-03 |
| 29 | GO:0016491: oxidoreductase activity | 1.14E-03 |
| 30 | GO:0004623: phospholipase A2 activity | 1.31E-03 |
| 31 | GO:0000293: ferric-chelate reductase activity | 1.61E-03 |
| 32 | GO:0008237: metallopeptidase activity | 1.62E-03 |
| 33 | GO:0004559: alpha-mannosidase activity | 1.93E-03 |
| 34 | GO:0019899: enzyme binding | 2.27E-03 |
| 35 | GO:0046914: transition metal ion binding | 3.00E-03 |
| 36 | GO:0005375: copper ion transmembrane transporter activity | 3.00E-03 |
| 37 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 3.40E-03 |
| 38 | GO:0071949: FAD binding | 3.40E-03 |
| 39 | GO:0045309: protein phosphorylated amino acid binding | 3.81E-03 |
| 40 | GO:0016844: strictosidine synthase activity | 3.81E-03 |
| 41 | GO:0005381: iron ion transmembrane transporter activity | 3.81E-03 |
| 42 | GO:0019904: protein domain specific binding | 4.67E-03 |
| 43 | GO:0031072: heat shock protein binding | 5.60E-03 |
| 44 | GO:0000155: phosphorelay sensor kinase activity | 5.60E-03 |
| 45 | GO:0051536: iron-sulfur cluster binding | 7.63E-03 |
| 46 | GO:0001046: core promoter sequence-specific DNA binding | 7.63E-03 |
| 47 | GO:0003714: transcription corepressor activity | 7.63E-03 |
| 48 | GO:0004176: ATP-dependent peptidase activity | 8.73E-03 |
| 49 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 9.42E-03 |
| 50 | GO:0022891: substrate-specific transmembrane transporter activity | 9.89E-03 |
| 51 | GO:0005506: iron ion binding | 1.00E-02 |
| 52 | GO:0047134: protein-disulfide reductase activity | 1.11E-02 |
| 53 | GO:0004791: thioredoxin-disulfide reductase activity | 1.30E-02 |
| 54 | GO:0016853: isomerase activity | 1.30E-02 |
| 55 | GO:0010181: FMN binding | 1.30E-02 |
| 56 | GO:0004872: receptor activity | 1.37E-02 |
| 57 | GO:0004518: nuclease activity | 1.50E-02 |
| 58 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.57E-02 |
| 59 | GO:0042802: identical protein binding | 1.61E-02 |
| 60 | GO:0008483: transaminase activity | 1.72E-02 |
| 61 | GO:0008168: methyltransferase activity | 1.89E-02 |
| 62 | GO:0016168: chlorophyll binding | 1.94E-02 |
| 63 | GO:0008236: serine-type peptidase activity | 2.17E-02 |
| 64 | GO:0004222: metalloendopeptidase activity | 2.41E-02 |
| 65 | GO:0050897: cobalt ion binding | 2.49E-02 |
| 66 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.49E-02 |
| 67 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.37E-02 |
| 68 | GO:0005198: structural molecule activity | 3.47E-02 |
| 69 | GO:0005515: protein binding | 3.85E-02 |
| 70 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.94E-02 |
| 71 | GO:0003777: microtubule motor activity | 4.24E-02 |
| 72 | GO:0031625: ubiquitin protein ligase binding | 4.24E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.32E-16 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.32E-09 |
| 3 | GO:0031969: chloroplast membrane | 1.25E-05 |
| 4 | GO:0031972: chloroplast intermembrane space | 1.46E-04 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.56E-04 |
| 6 | GO:0080085: signal recognition particle, chloroplast targeting | 3.33E-04 |
| 7 | GO:0009528: plastid inner membrane | 5.47E-04 |
| 8 | GO:0010007: magnesium chelatase complex | 5.47E-04 |
| 9 | GO:0009536: plastid | 9.93E-04 |
| 10 | GO:0030286: dynein complex | 1.04E-03 |
| 11 | GO:0031359: integral component of chloroplast outer membrane | 2.27E-03 |
| 12 | GO:0009707: chloroplast outer membrane | 2.36E-03 |
| 13 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.00E-03 |
| 14 | GO:0042644: chloroplast nucleoid | 3.40E-03 |
| 15 | GO:0009570: chloroplast stroma | 3.50E-03 |
| 16 | GO:0009534: chloroplast thylakoid | 4.69E-03 |
| 17 | GO:0031966: mitochondrial membrane | 4.80E-03 |
| 18 | GO:0005747: mitochondrial respiratory chain complex I | 6.28E-03 |
| 19 | GO:0005875: microtubule associated complex | 7.10E-03 |
| 20 | GO:0042651: thylakoid membrane | 8.18E-03 |
| 21 | GO:0045271: respiratory chain complex I | 8.18E-03 |
| 22 | GO:0009523: photosystem II | 1.37E-02 |
| 23 | GO:0009941: chloroplast envelope | 1.38E-02 |
| 24 | GO:0005778: peroxisomal membrane | 1.72E-02 |
| 25 | GO:0031977: thylakoid lumen | 3.01E-02 |