co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
2	GO:0043928: exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	0.00E+00
3	GO:0071035: nuclear polyadenylation-dependent rRNA catabolic process	0.00E+00
4	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
5	GO:0071038: nuclear polyadenylation-dependent tRNA catabolic process	0.00E+00
6	GO:0071034: CUT catabolic process	0.00E+00
7	GO:0000467: exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
8	GO:0071049: nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	0.00E+00
9	GO:0055122: response to very low light intensity stimulus	0.00E+00
10	GO:0039694: viral RNA genome replication	0.00E+00
11	GO:0090069: regulation of ribosome biogenesis	0.00E+00
12	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
13	GO:0006364: rRNA processing	3.06E-13
14	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.82E-07
15	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.64E-07
16	GO:0042254: ribosome biogenesis	2.63E-06
17	GO:0009553: embryo sac development	3.14E-06
18	GO:0009451: RNA modification	1.42E-05
19	GO:0006405: RNA export from nucleus	1.85E-05
20	GO:0006606: protein import into nucleus	3.59E-05
21	GO:0000028: ribosomal small subunit assembly	6.94E-05
22	GO:0036228: protein targeting to nuclear inner membrane	1.14E-04
23	GO:0000469: cleavage involved in rRNA processing	1.14E-04
24	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.14E-04
25	GO:0030490: maturation of SSU-rRNA	1.14E-04
26	GO:0010930: negative regulation of auxin mediated signaling pathway	1.14E-04
27	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.14E-04
28	GO:1902182: shoot apical meristem development	1.14E-04
29	GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	1.14E-04
30	GO:2000232: regulation of rRNA processing	1.14E-04
31	GO:0043985: histone H4-R3 methylation	1.14E-04
32	GO:0006913: nucleocytoplasmic transport	1.82E-04
33	GO:0080009: mRNA methylation	2.65E-04
34	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	2.65E-04
35	GO:0060149: negative regulation of posttranscriptional gene silencing	2.65E-04
36	GO:0034470: ncRNA processing	2.65E-04
37	GO:0034475: U4 snRNA 3'-end processing	2.65E-04
38	GO:0006610: ribosomal protein import into nucleus	2.65E-04
39	GO:0006421: asparaginyl-tRNA aminoacylation	4.38E-04
40	GO:0042780: tRNA 3'-end processing	4.38E-04
41	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.38E-04
42	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	4.38E-04
43	GO:0045604: regulation of epidermal cell differentiation	4.38E-04
44	GO:0009561: megagametogenesis	5.99E-04
45	GO:0007276: gamete generation	6.29E-04
46	GO:0010501: RNA secondary structure unwinding	6.98E-04
47	GO:0010197: polar nucleus fusion	7.50E-04
48	GO:0000460: maturation of 5.8S rRNA	8.35E-04
49	GO:0006479: protein methylation	8.35E-04
50	GO:0046345: abscisic acid catabolic process	8.35E-04
51	GO:0042273: ribosomal large subunit biogenesis	8.35E-04
52	GO:0048825: cotyledon development	8.60E-04
53	GO:0009790: embryo development	1.06E-03
54	GO:0000741: karyogamy	1.29E-03
55	GO:0000060: protein import into nucleus, translocation	1.29E-03
56	GO:0030488: tRNA methylation	1.54E-03
57	GO:0048444: floral organ morphogenesis	1.54E-03
58	GO:0010077: maintenance of inflorescence meristem identity	1.54E-03
59	GO:0009793: embryo development ending in seed dormancy	1.75E-03
60	GO:0006400: tRNA modification	1.81E-03
61	GO:0045995: regulation of embryonic development	1.81E-03
62	GO:0001522: pseudouridine synthesis	2.09E-03
63	GO:0019827: stem cell population maintenance	2.09E-03
64	GO:0042255: ribosome assembly	2.09E-03
65	GO:0051301: cell division	2.38E-03
66	GO:0009880: embryonic pattern specification	2.39E-03
67	GO:0006261: DNA-dependent DNA replication	2.39E-03
68	GO:2000024: regulation of leaf development	2.70E-03
69	GO:0001708: cell fate specification	2.70E-03
70	GO:0006607: NLS-bearing protein import into nucleus	2.70E-03
71	GO:0006349: regulation of gene expression by genetic imprinting	3.02E-03
72	GO:0006417: regulation of translation	4.06E-03
73	GO:0010582: floral meristem determinacy	4.06E-03
74	GO:2000012: regulation of auxin polar transport	4.43E-03
75	GO:0032259: methylation	4.59E-03
76	GO:0010030: positive regulation of seed germination	5.21E-03
77	GO:0051302: regulation of cell division	6.45E-03
78	GO:0051028: mRNA transport	8.74E-03
79	GO:0006342: chromatin silencing	9.73E-03
80	GO:0009960: endosperm development	9.73E-03
81	GO:0010305: leaf vascular tissue pattern formation	9.73E-03
82	GO:0006457: protein folding	1.40E-02
83	GO:0048366: leaf development	1.65E-02
84	GO:0009926: auxin polar transport	2.50E-02
85	GO:0006260: DNA replication	2.87E-02
86	GO:0009909: regulation of flower development	3.33E-02
87	GO:0042545: cell wall modification	3.89E-02
88	GO:0006396: RNA processing	4.06E-02
89	GO:0009555: pollen development	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
4	GO:0000166: nucleotide binding	1.53E-13
5	GO:0003723: RNA binding	5.27E-13
6	GO:0001054: RNA polymerase I activity	3.62E-06
7	GO:0004519: endonuclease activity	1.80E-05
8	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.25E-05
9	GO:0030515: snoRNA binding	5.34E-05
10	GO:0017056: structural constituent of nuclear pore	6.94E-05
11	GO:0008026: ATP-dependent helicase activity	7.12E-05
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.14E-04
13	GO:0004004: ATP-dependent RNA helicase activity	1.26E-04
14	GO:0005487: nucleocytoplasmic transporter activity	1.31E-04
15	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.65E-04
16	GO:0043021: ribonucleoprotein complex binding	2.65E-04
17	GO:0008168: methyltransferase activity	3.29E-04
18	GO:0004816: asparagine-tRNA ligase activity	4.38E-04
19	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.38E-04
20	GO:0070181: small ribosomal subunit rRNA binding	4.38E-04
21	GO:0048027: mRNA 5'-UTR binding	6.29E-04
22	GO:0003689: DNA clamp loader activity	1.05E-03
23	GO:0043022: ribosome binding	2.09E-03
24	GO:0005543: phospholipid binding	3.71E-03
25	GO:0004521: endoribonuclease activity	4.06E-03
26	GO:0001056: RNA polymerase III activity	4.06E-03
27	GO:0008139: nuclear localization sequence binding	4.43E-03
28	GO:0003676: nucleic acid binding	5.46E-03
29	GO:0003887: DNA-directed DNA polymerase activity	5.61E-03
30	GO:0043130: ubiquitin binding	6.03E-03
31	GO:0004527: exonuclease activity	9.73E-03
32	GO:0003713: transcription coactivator activity	9.73E-03
33	GO:0008536: Ran GTPase binding	9.73E-03
34	GO:0003729: mRNA binding	1.12E-02
35	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.70E-02
36	GO:0016787: hydrolase activity	1.93E-02
37	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.16E-02
38	GO:0042393: histone binding	2.29E-02
39	GO:0045330: aspartyl esterase activity	3.33E-02
40	GO:0004650: polygalacturonase activity	3.73E-02
41	GO:0030599: pectinesterase activity	3.81E-02
42	GO:0016887: ATPase activity	3.96E-02
43	GO:0051082: unfolded protein binding	3.98E-02
44	GO:0004386: helicase activity	4.23E-02
45	GO:0016829: lyase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
3	GO:0030688: preribosome, small subunit precursor	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0019034: viral replication complex	0.00E+00
6	GO:0005730: nucleolus	2.33E-23
7	GO:0005634: nucleus	3.19E-08
8	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.65E-07
9	GO:0070545: PeBoW complex	6.64E-07
10	GO:0034399: nuclear periphery	7.15E-07
11	GO:0005736: DNA-directed RNA polymerase I complex	1.50E-06
12	GO:0030687: preribosome, large subunit precursor	5.34E-05
13	GO:0044611: nuclear pore inner ring	1.14E-04
14	GO:0032040: small-subunit processome	2.11E-04
15	GO:0000177: cytoplasmic exosome (RNase complex)	2.65E-04
16	GO:0044613: nuclear pore central transport channel	2.65E-04
17	GO:0000176: nuclear exosome (RNase complex)	4.38E-04
18	GO:0005663: DNA replication factor C complex	8.35E-04
19	GO:0005654: nucleoplasm	8.48E-04
20	GO:0005643: nuclear pore	1.69E-03
21	GO:0005763: mitochondrial small ribosomal subunit	2.70E-03
22	GO:0005829: cytosol	2.91E-03
23	GO:0005666: DNA-directed RNA polymerase III complex	3.02E-03
24	GO:0005834: heterotrimeric G-protein complex	4.62E-03
25	GO:0043234: protein complex	5.61E-03
26	GO:0042651: thylakoid membrane	6.45E-03
27	GO:0031965: nuclear membrane	1.08E-02
28	GO:0030529: intracellular ribonucleoprotein complex	1.46E-02
29	GO:0015934: large ribosomal subunit	1.96E-02
30	GO:0005635: nuclear envelope	3.25E-02
31	GO:0016607: nuclear speck	3.57E-02