GO Enrichment Analysis of Co-expressed Genes with
AT3G09630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 3 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 4 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 5 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 6 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 7 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 8 | GO:0006412: translation | 3.00E-109 |
| 9 | GO:0042254: ribosome biogenesis | 1.21E-36 |
| 10 | GO:0000027: ribosomal large subunit assembly | 5.12E-13 |
| 11 | GO:0000028: ribosomal small subunit assembly | 1.67E-07 |
| 12 | GO:0046686: response to cadmium ion | 6.44E-07 |
| 13 | GO:0006626: protein targeting to mitochondrion | 2.70E-06 |
| 14 | GO:0009735: response to cytokinin | 3.24E-06 |
| 15 | GO:0009955: adaxial/abaxial pattern specification | 5.48E-06 |
| 16 | GO:0006458: 'de novo' protein folding | 5.48E-06 |
| 17 | GO:0009967: positive regulation of signal transduction | 6.07E-06 |
| 18 | GO:0045041: protein import into mitochondrial intermembrane space | 6.07E-06 |
| 19 | GO:1902626: assembly of large subunit precursor of preribosome | 2.13E-05 |
| 20 | GO:0002181: cytoplasmic translation | 2.13E-05 |
| 21 | GO:0031167: rRNA methylation | 1.30E-04 |
| 22 | GO:0034976: response to endoplasmic reticulum stress | 1.45E-04 |
| 23 | GO:0030150: protein import into mitochondrial matrix | 1.69E-04 |
| 24 | GO:0061077: chaperone-mediated protein folding | 2.23E-04 |
| 25 | GO:0042026: protein refolding | 2.52E-04 |
| 26 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.67E-04 |
| 27 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.67E-04 |
| 28 | GO:0006407: rRNA export from nucleus | 3.67E-04 |
| 29 | GO:0048453: sepal formation | 3.67E-04 |
| 30 | GO:0031060: regulation of histone methylation | 3.67E-04 |
| 31 | GO:0030490: maturation of SSU-rRNA | 3.67E-04 |
| 32 | GO:0008033: tRNA processing | 3.94E-04 |
| 33 | GO:0000413: protein peptidyl-prolyl isomerization | 3.94E-04 |
| 34 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 4.09E-04 |
| 35 | GO:0006414: translational elongation | 4.78E-04 |
| 36 | GO:0001510: RNA methylation | 5.01E-04 |
| 37 | GO:0006364: rRNA processing | 5.89E-04 |
| 38 | GO:0048569: post-embryonic animal organ development | 8.00E-04 |
| 39 | GO:0055129: L-proline biosynthetic process | 8.00E-04 |
| 40 | GO:0015786: UDP-glucose transport | 8.00E-04 |
| 41 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 8.00E-04 |
| 42 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 8.00E-04 |
| 43 | GO:0009793: embryo development ending in seed dormancy | 1.02E-03 |
| 44 | GO:0006820: anion transport | 1.08E-03 |
| 45 | GO:0006457: protein folding | 1.17E-03 |
| 46 | GO:0045039: protein import into mitochondrial inner membrane | 1.29E-03 |
| 47 | GO:0006954: inflammatory response | 1.29E-03 |
| 48 | GO:0015783: GDP-fucose transport | 1.29E-03 |
| 49 | GO:0010476: gibberellin mediated signaling pathway | 1.29E-03 |
| 50 | GO:0042256: mature ribosome assembly | 1.29E-03 |
| 51 | GO:0010338: leaf formation | 1.29E-03 |
| 52 | GO:0070301: cellular response to hydrogen peroxide | 1.87E-03 |
| 53 | GO:0006241: CTP biosynthetic process | 1.87E-03 |
| 54 | GO:0072334: UDP-galactose transmembrane transport | 1.87E-03 |
| 55 | GO:0006165: nucleoside diphosphate phosphorylation | 1.87E-03 |
| 56 | GO:0006228: UTP biosynthetic process | 1.87E-03 |
| 57 | GO:0006164: purine nucleotide biosynthetic process | 1.87E-03 |
| 58 | GO:0032981: mitochondrial respiratory chain complex I assembly | 1.87E-03 |
| 59 | GO:0006168: adenine salvage | 1.87E-03 |
| 60 | GO:0046513: ceramide biosynthetic process | 1.87E-03 |
| 61 | GO:0033617: mitochondrial respiratory chain complex IV assembly | 1.87E-03 |
| 62 | GO:0006166: purine ribonucleoside salvage | 1.87E-03 |
| 63 | GO:0042274: ribosomal small subunit biogenesis | 2.51E-03 |
| 64 | GO:0006183: GTP biosynthetic process | 2.51E-03 |
| 65 | GO:0051205: protein insertion into membrane | 2.51E-03 |
| 66 | GO:0071215: cellular response to abscisic acid stimulus | 2.77E-03 |
| 67 | GO:0009651: response to salt stress | 2.84E-03 |
| 68 | GO:0036065: fucosylation | 3.21E-03 |
| 69 | GO:0006461: protein complex assembly | 3.21E-03 |
| 70 | GO:1902183: regulation of shoot apical meristem development | 3.21E-03 |
| 71 | GO:0044209: AMP salvage | 3.21E-03 |
| 72 | GO:0000470: maturation of LSU-rRNA | 3.96E-03 |
| 73 | GO:0010358: leaf shaping | 3.96E-03 |
| 74 | GO:0000741: karyogamy | 3.96E-03 |
| 75 | GO:0006561: proline biosynthetic process | 3.96E-03 |
| 76 | GO:0006096: glycolytic process | 4.29E-03 |
| 77 | GO:0009749: response to glucose | 4.39E-03 |
| 78 | GO:1901001: negative regulation of response to salt stress | 4.78E-03 |
| 79 | GO:0000054: ribosomal subunit export from nucleus | 4.78E-03 |
| 80 | GO:0009612: response to mechanical stimulus | 4.78E-03 |
| 81 | GO:0000245: spliceosomal complex assembly | 4.78E-03 |
| 82 | GO:0009648: photoperiodism | 4.78E-03 |
| 83 | GO:0009553: embryo sac development | 5.23E-03 |
| 84 | GO:0009567: double fertilization forming a zygote and endosperm | 5.69E-03 |
| 85 | GO:0009690: cytokinin metabolic process | 6.56E-03 |
| 86 | GO:0050821: protein stabilization | 6.56E-03 |
| 87 | GO:0001558: regulation of cell growth | 7.52E-03 |
| 88 | GO:0007338: single fertilization | 8.54E-03 |
| 89 | GO:0009245: lipid A biosynthetic process | 8.54E-03 |
| 90 | GO:0006098: pentose-phosphate shunt | 8.54E-03 |
| 91 | GO:0048507: meristem development | 8.54E-03 |
| 92 | GO:0006189: 'de novo' IMP biosynthetic process | 8.54E-03 |
| 93 | GO:0015780: nucleotide-sugar transport | 8.54E-03 |
| 94 | GO:0098656: anion transmembrane transport | 8.54E-03 |
| 95 | GO:0042761: very long-chain fatty acid biosynthetic process | 9.60E-03 |
| 96 | GO:0006413: translational initiation | 9.98E-03 |
| 97 | GO:0006913: nucleocytoplasmic transport | 1.19E-02 |
| 98 | GO:0015770: sucrose transport | 1.19E-02 |
| 99 | GO:0010015: root morphogenesis | 1.19E-02 |
| 100 | GO:0010102: lateral root morphogenesis | 1.43E-02 |
| 101 | GO:0006094: gluconeogenesis | 1.43E-02 |
| 102 | GO:0008283: cell proliferation | 1.46E-02 |
| 103 | GO:0048467: gynoecium development | 1.56E-02 |
| 104 | GO:0048440: carpel development | 1.56E-02 |
| 105 | GO:0002237: response to molecule of bacterial origin | 1.56E-02 |
| 106 | GO:0009933: meristem structural organization | 1.56E-02 |
| 107 | GO:0009644: response to high light intensity | 1.58E-02 |
| 108 | GO:0009965: leaf morphogenesis | 1.64E-02 |
| 109 | GO:0009969: xyloglucan biosynthetic process | 1.69E-02 |
| 110 | GO:0090351: seedling development | 1.69E-02 |
| 111 | GO:0009116: nucleoside metabolic process | 1.96E-02 |
| 112 | GO:0006289: nucleotide-excision repair | 1.96E-02 |
| 113 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.04E-02 |
| 114 | GO:0051302: regulation of cell division | 2.11E-02 |
| 115 | GO:0051260: protein homooligomerization | 2.25E-02 |
| 116 | GO:0010431: seed maturation | 2.25E-02 |
| 117 | GO:0007005: mitochondrion organization | 2.40E-02 |
| 118 | GO:0010082: regulation of root meristem growth | 2.56E-02 |
| 119 | GO:0040007: growth | 2.56E-02 |
| 120 | GO:0010584: pollen exine formation | 2.71E-02 |
| 121 | GO:0048443: stamen development | 2.71E-02 |
| 122 | GO:0006979: response to oxidative stress | 2.75E-02 |
| 123 | GO:0006606: protein import into nucleus | 3.04E-02 |
| 124 | GO:0045454: cell redox homeostasis | 3.12E-02 |
| 125 | GO:0010305: leaf vascular tissue pattern formation | 3.20E-02 |
| 126 | GO:0010197: polar nucleus fusion | 3.20E-02 |
| 127 | GO:0048868: pollen tube development | 3.20E-02 |
| 128 | GO:0010183: pollen tube guidance | 3.55E-02 |
| 129 | GO:0080156: mitochondrial mRNA modification | 3.72E-02 |
| 130 | GO:0000302: response to reactive oxygen species | 3.72E-02 |
| 131 | GO:0009845: seed germination | 3.80E-02 |
| 132 | GO:0009409: response to cold | 4.48E-02 |
| 133 | GO:0016579: protein deubiquitination | 4.64E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004735: pyrroline-5-carboxylate reductase activity | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 4 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 3.39E-130 |
| 6 | GO:0003729: mRNA binding | 2.49E-31 |
| 7 | GO:0019843: rRNA binding | 2.73E-14 |
| 8 | GO:0003746: translation elongation factor activity | 1.69E-09 |
| 9 | GO:0044183: protein binding involved in protein folding | 1.43E-06 |
| 10 | GO:0005078: MAP-kinase scaffold activity | 6.07E-06 |
| 11 | GO:0030515: snoRNA binding | 8.74E-06 |
| 12 | GO:0008649: rRNA methyltransferase activity | 2.13E-05 |
| 13 | GO:0008097: 5S rRNA binding | 4.69E-05 |
| 14 | GO:0003723: RNA binding | 6.48E-05 |
| 15 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.62E-04 |
| 16 | GO:0004656: procollagen-proline 4-dioxygenase activity | 2.52E-04 |
| 17 | GO:0003756: protein disulfide isomerase activity | 3.19E-04 |
| 18 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 3.67E-04 |
| 19 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 3.67E-04 |
| 20 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 3.67E-04 |
| 21 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 3.67E-04 |
| 22 | GO:0015288: porin activity | 4.09E-04 |
| 23 | GO:0008308: voltage-gated anion channel activity | 5.01E-04 |
| 24 | GO:0001055: RNA polymerase II activity | 7.09E-04 |
| 25 | GO:0008805: carbon-monoxide oxygenase activity | 8.00E-04 |
| 26 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 8.00E-04 |
| 27 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 8.00E-04 |
| 28 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 8.00E-04 |
| 29 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 8.00E-04 |
| 30 | GO:0004634: phosphopyruvate hydratase activity | 8.00E-04 |
| 31 | GO:0050291: sphingosine N-acyltransferase activity | 8.00E-04 |
| 32 | GO:0004618: phosphoglycerate kinase activity | 8.00E-04 |
| 33 | GO:0001054: RNA polymerase I activity | 9.51E-04 |
| 34 | GO:0051082: unfolded protein binding | 1.01E-03 |
| 35 | GO:0001056: RNA polymerase III activity | 1.08E-03 |
| 36 | GO:0032947: protein complex scaffold | 1.29E-03 |
| 37 | GO:0005457: GDP-fucose transmembrane transporter activity | 1.29E-03 |
| 38 | GO:0008469: histone-arginine N-methyltransferase activity | 1.29E-03 |
| 39 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.29E-03 |
| 40 | GO:0003999: adenine phosphoribosyltransferase activity | 1.87E-03 |
| 41 | GO:0005460: UDP-glucose transmembrane transporter activity | 1.87E-03 |
| 42 | GO:0004550: nucleoside diphosphate kinase activity | 1.87E-03 |
| 43 | GO:0031418: L-ascorbic acid binding | 1.91E-03 |
| 44 | GO:0004298: threonine-type endopeptidase activity | 2.32E-03 |
| 45 | GO:0000166: nucleotide binding | 2.35E-03 |
| 46 | GO:0070628: proteasome binding | 2.51E-03 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.88E-03 |
| 48 | GO:0005459: UDP-galactose transmembrane transporter activity | 3.21E-03 |
| 49 | GO:0004332: fructose-bisphosphate aldolase activity | 3.96E-03 |
| 50 | GO:0031593: polyubiquitin binding | 3.96E-03 |
| 51 | GO:0031177: phosphopantetheine binding | 3.96E-03 |
| 52 | GO:0016853: isomerase activity | 4.09E-03 |
| 53 | GO:0005507: copper ion binding | 4.73E-03 |
| 54 | GO:0000035: acyl binding | 4.78E-03 |
| 55 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 5.64E-03 |
| 56 | GO:0008235: metalloexopeptidase activity | 5.64E-03 |
| 57 | GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity | 5.64E-03 |
| 58 | GO:0008233: peptidase activity | 6.08E-03 |
| 59 | GO:0005525: GTP binding | 6.28E-03 |
| 60 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 6.56E-03 |
| 61 | GO:0008135: translation factor activity, RNA binding | 7.52E-03 |
| 62 | GO:0008417: fucosyltransferase activity | 8.54E-03 |
| 63 | GO:0050897: cobalt ion binding | 1.03E-02 |
| 64 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.13E-02 |
| 65 | GO:0008515: sucrose transmembrane transporter activity | 1.19E-02 |
| 66 | GO:0015266: protein channel activity | 1.43E-02 |
| 67 | GO:0051119: sugar transmembrane transporter activity | 1.69E-02 |
| 68 | GO:0043130: ubiquitin binding | 1.96E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.97E-02 |
| 70 | GO:0051087: chaperone binding | 2.11E-02 |
| 71 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 2.25E-02 |
| 72 | GO:0008514: organic anion transmembrane transporter activity | 2.71E-02 |
| 73 | GO:0010181: FMN binding | 3.37E-02 |
| 74 | GO:0003924: GTPase activity | 4.04E-02 |
| 75 | GO:0003684: damaged DNA binding | 4.27E-02 |
| 76 | GO:0008237: metallopeptidase activity | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0005840: ribosome | 2.66E-89 |
| 3 | GO:0022626: cytosolic ribosome | 2.22E-88 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 1.67E-80 |
| 5 | GO:0022627: cytosolic small ribosomal subunit | 9.94E-55 |
| 6 | GO:0005829: cytosol | 3.00E-32 |
| 7 | GO:0005730: nucleolus | 1.13E-31 |
| 8 | GO:0005737: cytoplasm | 5.59E-29 |
| 9 | GO:0009506: plasmodesma | 3.12E-26 |
| 10 | GO:0005774: vacuolar membrane | 7.71E-21 |
| 11 | GO:0015934: large ribosomal subunit | 3.17E-16 |
| 12 | GO:0016020: membrane | 1.59E-11 |
| 13 | GO:0005618: cell wall | 1.43E-10 |
| 14 | GO:0005773: vacuole | 3.24E-10 |
| 15 | GO:0015935: small ribosomal subunit | 6.37E-09 |
| 16 | GO:0005886: plasma membrane | 9.32E-07 |
| 17 | GO:0031428: box C/D snoRNP complex | 3.18E-06 |
| 18 | GO:0009507: chloroplast | 5.88E-05 |
| 19 | GO:0032040: small-subunit processome | 7.05E-05 |
| 20 | GO:0005741: mitochondrial outer membrane | 2.23E-04 |
| 21 | GO:0030686: 90S preribosome | 3.67E-04 |
| 22 | GO:0046930: pore complex | 5.01E-04 |
| 23 | GO:0005736: DNA-directed RNA polymerase I complex | 6.01E-04 |
| 24 | GO:0005666: DNA-directed RNA polymerase III complex | 7.09E-04 |
| 25 | GO:0015030: Cajal body | 7.09E-04 |
| 26 | GO:0000015: phosphopyruvate hydratase complex | 8.00E-04 |
| 27 | GO:0000418: DNA-directed RNA polymerase IV complex | 8.26E-04 |
| 28 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.08E-03 |
| 29 | GO:0005758: mitochondrial intermembrane space | 1.91E-03 |
| 30 | GO:0005839: proteasome core complex | 2.32E-03 |
| 31 | GO:0005743: mitochondrial inner membrane | 2.61E-03 |
| 32 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 3.01E-03 |
| 33 | GO:0000502: proteasome complex | 3.46E-03 |
| 34 | GO:0005851: eukaryotic translation initiation factor 2B complex | 3.96E-03 |
| 35 | GO:0005681: spliceosomal complex | 4.29E-03 |
| 36 | GO:0005834: heterotrimeric G-protein complex | 4.65E-03 |
| 37 | GO:0016272: prefoldin complex | 4.78E-03 |
| 38 | GO:0005732: small nucleolar ribonucleoprotein complex | 6.07E-03 |
| 39 | GO:0005788: endoplasmic reticulum lumen | 7.19E-03 |
| 40 | GO:0005622: intracellular | 7.30E-03 |
| 41 | GO:0005742: mitochondrial outer membrane translocase complex | 7.52E-03 |
| 42 | GO:0005783: endoplasmic reticulum | 9.22E-03 |
| 43 | GO:0005759: mitochondrial matrix | 9.68E-03 |
| 44 | GO:0005740: mitochondrial envelope | 1.07E-02 |
| 45 | GO:0048471: perinuclear region of cytoplasm | 1.19E-02 |
| 46 | GO:0019013: viral nucleocapsid | 1.43E-02 |
| 47 | GO:0005794: Golgi apparatus | 1.78E-02 |
| 48 | GO:0000419: DNA-directed RNA polymerase V complex | 1.82E-02 |
| 49 | GO:0070469: respiratory chain | 2.11E-02 |
| 50 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.14E-02 |
| 51 | GO:0016592: mediator complex | 3.90E-02 |
| 52 | GO:0032580: Golgi cisterna membrane | 4.27E-02 |
| 53 | GO:0030529: intracellular ribonucleoprotein complex | 4.83E-02 |