co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001142: nicotinate transport	0.00E+00
2	GO:0042353: fucose biosynthetic process	0.00E+00
3	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
4	GO:0032499: detection of peptidoglycan	0.00E+00
5	GO:2001143: N-methylnicotinate transport	0.00E+00
6	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
7	GO:0009560: embryo sac egg cell differentiation	0.00E+00
8	GO:0046398: UDP-glucuronate metabolic process	0.00E+00
9	GO:0010245: radial microtubular system formation	0.00E+00
10	GO:0052573: UDP-D-galactose metabolic process	0.00E+00
11	GO:0051131: chaperone-mediated protein complex assembly	2.15E-05
12	GO:0009408: response to heat	2.80E-05
13	GO:0046686: response to cadmium ion	3.49E-05
14	GO:0009845: seed germination	8.08E-05
15	GO:0061077: chaperone-mediated protein folding	8.85E-05
16	GO:0045010: actin nucleation	2.12E-04
17	GO:0051180: vitamin transport	2.36E-04
18	GO:0018920: glyphosate metabolic process	2.36E-04
19	GO:0030974: thiamine pyrophosphate transport	2.36E-04
20	GO:0071277: cellular response to calcium ion	2.36E-04
21	GO:0032491: detection of molecule of fungal origin	2.36E-04
22	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	2.36E-04
23	GO:0009966: regulation of signal transduction	2.36E-04
24	GO:0019521: D-gluconate metabolic process	5.24E-04
25	GO:0010372: positive regulation of gibberellin biosynthetic process	5.24E-04
26	GO:0015893: drug transport	5.24E-04
27	GO:0046939: nucleotide phosphorylation	5.24E-04
28	GO:0010155: regulation of proton transport	5.24E-04
29	GO:0006611: protein export from nucleus	5.24E-04
30	GO:0006468: protein phosphorylation	7.22E-04
31	GO:0070475: rRNA base methylation	8.52E-04
32	GO:0051176: positive regulation of sulfur metabolic process	8.52E-04
33	GO:0006081: cellular aldehyde metabolic process	8.52E-04
34	GO:0000055: ribosomal large subunit export from nucleus	8.52E-04
35	GO:0010366: negative regulation of ethylene biosynthetic process	8.52E-04
36	GO:0006011: UDP-glucose metabolic process	8.52E-04
37	GO:0010447: response to acidic pH	8.52E-04
38	GO:0009863: salicylic acid mediated signaling pathway	1.02E-03
39	GO:0006457: protein folding	1.07E-03
40	GO:0009695: jasmonic acid biosynthetic process	1.12E-03
41	GO:0033014: tetrapyrrole biosynthetic process	1.21E-03
42	GO:0009226: nucleotide-sugar biosynthetic process	1.21E-03
43	GO:0030100: regulation of endocytosis	1.21E-03
44	GO:0009399: nitrogen fixation	1.21E-03
45	GO:0015696: ammonium transport	1.21E-03
46	GO:0071323: cellular response to chitin	1.21E-03
47	GO:0002679: respiratory burst involved in defense response	1.21E-03
48	GO:0009558: embryo sac cellularization	1.21E-03
49	GO:0009737: response to abscisic acid	1.27E-03
50	GO:0072488: ammonium transmembrane transport	1.62E-03
51	GO:0006536: glutamate metabolic process	1.62E-03
52	GO:0071219: cellular response to molecule of bacterial origin	1.62E-03
53	GO:0001709: cell fate determination	1.62E-03
54	GO:0033356: UDP-L-arabinose metabolic process	1.62E-03
55	GO:0007112: male meiosis cytokinesis	1.62E-03
56	GO:0034440: lipid oxidation	1.62E-03
57	GO:1902347: response to strigolactone	1.62E-03
58	GO:0015743: malate transport	1.62E-03
59	GO:0033320: UDP-D-xylose biosynthetic process	1.62E-03
60	GO:0006810: transport	1.72E-03
61	GO:0009164: nucleoside catabolic process	2.07E-03
62	GO:0030041: actin filament polymerization	2.07E-03
63	GO:0007029: endoplasmic reticulum organization	2.07E-03
64	GO:0009435: NAD biosynthetic process	2.07E-03
65	GO:0009620: response to fungus	2.12E-03
66	GO:0048544: recognition of pollen	2.15E-03
67	GO:0009749: response to glucose	2.31E-03
68	GO:0010200: response to chitin	2.44E-03
69	GO:0042732: D-xylose metabolic process	2.55E-03
70	GO:0048317: seed morphogenesis	2.55E-03
71	GO:0006796: phosphate-containing compound metabolic process	2.55E-03
72	GO:0033365: protein localization to organelle	2.55E-03
73	GO:0010337: regulation of salicylic acid metabolic process	2.55E-03
74	GO:0006014: D-ribose metabolic process	2.55E-03
75	GO:0016070: RNA metabolic process	2.55E-03
76	GO:0010256: endomembrane system organization	2.55E-03
77	GO:0000470: maturation of LSU-rRNA	2.55E-03
78	GO:0046777: protein autophosphorylation	2.56E-03
79	GO:0009742: brassinosteroid mediated signaling pathway	2.56E-03
80	GO:0035556: intracellular signal transduction	2.84E-03
81	GO:0009423: chorismate biosynthetic process	3.06E-03
82	GO:0080086: stamen filament development	3.06E-03
83	GO:0010286: heat acclimation	3.17E-03
84	GO:0006744: ubiquinone biosynthetic process	3.61E-03
85	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.61E-03
86	GO:0070370: cellular heat acclimation	3.61E-03
87	GO:0010044: response to aluminum ion	3.61E-03
88	GO:0006955: immune response	3.61E-03
89	GO:0009816: defense response to bacterium, incompatible interaction	3.76E-03
90	GO:0006402: mRNA catabolic process	4.19E-03
91	GO:0006491: N-glycan processing	4.19E-03
92	GO:1900150: regulation of defense response to fungus	4.19E-03
93	GO:0050821: protein stabilization	4.19E-03
94	GO:0048658: anther wall tapetum development	4.19E-03
95	GO:0008219: cell death	4.64E-03
96	GO:0017004: cytochrome complex assembly	4.79E-03
97	GO:0010208: pollen wall assembly	4.79E-03
98	GO:0009932: cell tip growth	4.79E-03
99	GO:0015996: chlorophyll catabolic process	4.79E-03
100	GO:0010311: lateral root formation	4.87E-03
101	GO:0009051: pentose-phosphate shunt, oxidative branch	5.43E-03
102	GO:0051865: protein autoubiquitination	5.43E-03
103	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	5.43E-03
104	GO:0006783: heme biosynthetic process	5.43E-03
105	GO:0009060: aerobic respiration	5.43E-03
106	GO:0046685: response to arsenic-containing substance	5.43E-03
107	GO:0007166: cell surface receptor signaling pathway	5.65E-03
108	GO:0045087: innate immune response	5.87E-03
109	GO:0016051: carbohydrate biosynthetic process	5.87E-03
110	GO:0006779: porphyrin-containing compound biosynthetic process	6.09E-03
111	GO:0090332: stomatal closure	6.09E-03
112	GO:0008202: steroid metabolic process	6.09E-03
113	GO:0006839: mitochondrial transport	6.69E-03
114	GO:0006782: protoporphyrinogen IX biosynthetic process	6.78E-03
115	GO:0019538: protein metabolic process	6.78E-03
116	GO:0048829: root cap development	6.78E-03
117	GO:0009073: aromatic amino acid family biosynthetic process	7.50E-03
118	GO:0009750: response to fructose	7.50E-03
119	GO:0048229: gametophyte development	7.50E-03
120	GO:0010015: root morphogenesis	7.50E-03
121	GO:0009644: response to high light intensity	8.19E-03
122	GO:0010105: negative regulation of ethylene-activated signaling pathway	8.25E-03
123	GO:0000266: mitochondrial fission	8.25E-03
124	GO:0006970: response to osmotic stress	9.13E-03
125	GO:0034605: cellular response to heat	9.82E-03
126	GO:0006446: regulation of translational initiation	9.82E-03
127	GO:0009266: response to temperature stimulus	9.82E-03
128	GO:0009555: pollen development	1.00E-02
129	GO:0006486: protein glycosylation	1.02E-02
130	GO:0009611: response to wounding	1.03E-02
131	GO:0009901: anther dehiscence	1.06E-02
132	GO:0090351: seedling development	1.06E-02
133	GO:0070588: calcium ion transmembrane transport	1.06E-02
134	GO:0009969: xyloglucan biosynthetic process	1.06E-02
135	GO:0009225: nucleotide-sugar metabolic process	1.06E-02
136	GO:0006952: defense response	1.21E-02
137	GO:0010187: negative regulation of seed germination	1.24E-02
138	GO:0006487: protein N-linked glycosylation	1.24E-02
139	GO:0043622: cortical microtubule organization	1.32E-02
140	GO:0031408: oxylipin biosynthetic process	1.42E-02
141	GO:0009624: response to nematode	1.46E-02
142	GO:0016226: iron-sulfur cluster assembly	1.51E-02
143	GO:0030433: ubiquitin-dependent ERAD pathway	1.51E-02
144	GO:0071215: cellular response to abscisic acid stimulus	1.61E-02
145	GO:0009686: gibberellin biosynthetic process	1.61E-02
146	GO:0040007: growth	1.61E-02
147	GO:0000398: mRNA splicing, via spliceosome	1.69E-02
148	GO:0006817: phosphate ion transport	1.70E-02
149	GO:0009306: protein secretion	1.70E-02
150	GO:0042631: cellular response to water deprivation	1.91E-02
151	GO:0010501: RNA secondary structure unwinding	1.91E-02
152	GO:0048653: anther development	1.91E-02
153	GO:0009960: endosperm development	2.01E-02
154	GO:0007018: microtubule-based movement	2.12E-02
155	GO:0019252: starch biosynthetic process	2.23E-02
156	GO:0002229: defense response to oomycetes	2.34E-02
157	GO:0006891: intra-Golgi vesicle-mediated transport	2.34E-02
158	GO:0031047: gene silencing by RNA	2.45E-02
159	GO:0010090: trichome morphogenesis	2.56E-02
160	GO:1901657: glycosyl compound metabolic process	2.56E-02
161	GO:0009651: response to salt stress	2.71E-02
162	GO:0009414: response to water deprivation	2.77E-02
163	GO:0006904: vesicle docking involved in exocytosis	2.80E-02
164	GO:0007267: cell-cell signaling	2.80E-02
165	GO:0042742: defense response to bacterium	2.87E-02
166	GO:0006979: response to oxidative stress	2.91E-02
167	GO:0000910: cytokinesis	2.92E-02
168	GO:0009617: response to bacterium	3.02E-02
169	GO:0001666: response to hypoxia	3.04E-02
170	GO:0009615: response to virus	3.04E-02
171	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.16E-02
172	GO:0015995: chlorophyll biosynthetic process	3.41E-02
173	GO:0048573: photoperiodism, flowering	3.41E-02
174	GO:0009738: abscisic acid-activated signaling pathway	3.52E-02
175	GO:0016049: cell growth	3.54E-02
176	GO:0009817: defense response to fungus, incompatible interaction	3.67E-02
177	GO:0009834: plant-type secondary cell wall biogenesis	3.93E-02
178	GO:0006499: N-terminal protein myristoylation	3.93E-02
179	GO:0009637: response to blue light	4.34E-02
180	GO:0009723: response to ethylene	4.51E-02
181	GO:0048366: leaf development	4.58E-02
182	GO:0006887: exocytosis	4.90E-02
183	GO:0006897: endocytosis	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0008987: quinolinate synthetase A activity	0.00E+00
2	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
3	GO:0005522: profilin binding	0.00E+00
4	GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity	0.00E+00
5	GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity	0.00E+00
6	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
7	GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity	0.00E+00
8	GO:2001080: chitosan binding	0.00E+00
9	GO:0047350: glucuronate-1-phosphate uridylyltransferase activity	0.00E+00
10	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
11	GO:0030621: U4 snRNA binding	0.00E+00
12	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
13	GO:0090416: nicotinate transporter activity	0.00E+00
14	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
15	GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity	0.00E+00
16	GO:0102118: gibberellin A4 carboxyl methyltransferase activity	0.00E+00
17	GO:0005524: ATP binding	4.02E-06
18	GO:0047631: ADP-ribose diphosphatase activity	6.26E-05
19	GO:0004674: protein serine/threonine kinase activity	1.55E-04
20	GO:0015085: calcium ion transmembrane transporter activity	2.36E-04
21	GO:0080025: phosphatidylinositol-3,5-bisphosphate binding	2.36E-04
22	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	2.36E-04
23	GO:0032266: phosphatidylinositol-3-phosphate binding	2.36E-04
24	GO:0030544: Hsp70 protein binding	2.36E-04
25	GO:0010341: gibberellin carboxyl-O-methyltransferase activity	2.36E-04
26	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	2.36E-04
27	GO:0017151: DEAD/H-box RNA helicase binding	2.36E-04
28	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	2.36E-04
29	GO:0008114: phosphogluconate 2-dehydrogenase activity	2.36E-04
30	GO:0090422: thiamine pyrophosphate transporter activity	2.36E-04
31	GO:0016301: kinase activity	2.82E-04
32	GO:0051082: unfolded protein binding	3.73E-04
33	GO:0004103: choline kinase activity	5.24E-04
34	GO:0008883: glutamyl-tRNA reductase activity	5.24E-04
35	GO:0019888: protein phosphatase regulator activity	6.63E-04
36	GO:0046423: allene-oxide cyclase activity	8.52E-04
37	GO:0016165: linoleate 13S-lipoxygenase activity	8.52E-04
38	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	8.52E-04
39	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	8.52E-04
40	GO:0019201: nucleotide kinase activity	1.21E-03
41	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.21E-03
42	GO:0043023: ribosomal large subunit binding	1.21E-03
43	GO:0004351: glutamate decarboxylase activity	1.21E-03
44	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	1.21E-03
45	GO:0043015: gamma-tubulin binding	1.62E-03
46	GO:0019199: transmembrane receptor protein kinase activity	1.62E-03
47	GO:0005253: anion channel activity	1.62E-03
48	GO:0003729: mRNA binding	1.77E-03
49	GO:0004356: glutamate-ammonia ligase activity	2.07E-03
50	GO:0017070: U6 snRNA binding	2.07E-03
51	GO:0000210: NAD+ diphosphatase activity	2.55E-03
52	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.55E-03
53	GO:0035673: oligopeptide transmembrane transporter activity	2.55E-03
54	GO:0016462: pyrophosphatase activity	2.55E-03
55	GO:0008519: ammonium transmembrane transporter activity	2.55E-03
56	GO:0048040: UDP-glucuronate decarboxylase activity	2.55E-03
57	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	3.06E-03
58	GO:0004017: adenylate kinase activity	3.06E-03
59	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.06E-03
60	GO:0004747: ribokinase activity	3.06E-03
61	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.06E-03
62	GO:0004559: alpha-mannosidase activity	3.06E-03
63	GO:0070403: NAD+ binding	3.06E-03
64	GO:0004427: inorganic diphosphatase activity	3.61E-03
65	GO:0015140: malate transmembrane transporter activity	3.61E-03
66	GO:0008143: poly(A) binding	3.61E-03
67	GO:0004143: diacylglycerol kinase activity	3.61E-03
68	GO:0008865: fructokinase activity	4.19E-03
69	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.19E-03
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.36E-03
71	GO:0003951: NAD+ kinase activity	4.79E-03
72	GO:0008142: oxysterol binding	4.79E-03
73	GO:0005516: calmodulin binding	5.28E-03
74	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.36E-03
75	GO:0004672: protein kinase activity	5.55E-03
76	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.09E-03
77	GO:0008047: enzyme activator activity	6.78E-03
78	GO:0005509: calcium ion binding	7.70E-03
79	GO:0043621: protein self-association	8.19E-03
80	GO:0015198: oligopeptide transporter activity	8.25E-03
81	GO:0008378: galactosyltransferase activity	8.25E-03
82	GO:0005388: calcium-transporting ATPase activity	9.02E-03
83	GO:0008061: chitin binding	1.06E-02
84	GO:0005215: transporter activity	1.06E-02
85	GO:0031625: ubiquitin protein ligase binding	1.13E-02
86	GO:0005528: FK506 binding	1.24E-02
87	GO:0004707: MAP kinase activity	1.42E-02
88	GO:0033612: receptor serine/threonine kinase binding	1.42E-02
89	GO:0003779: actin binding	1.42E-02
90	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.42E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	1.61E-02
92	GO:0001085: RNA polymerase II transcription factor binding	2.01E-02
93	GO:0004518: nuclease activity	2.45E-02
94	GO:0051015: actin filament binding	2.56E-02
95	GO:0008017: microtubule binding	2.65E-02
96	GO:0008375: acetylglucosaminyltransferase activity	3.29E-02
97	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.29E-02
98	GO:0102483: scopolin beta-glucosidase activity	3.41E-02
99	GO:0004004: ATP-dependent RNA helicase activity	3.41E-02
100	GO:0030247: polysaccharide binding	3.41E-02
101	GO:0004683: calmodulin-dependent protein kinase activity	3.41E-02
102	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.54E-02
103	GO:0000166: nucleotide binding	3.67E-02
104	GO:0046982: protein heterodimerization activity	3.83E-02
105	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.07E-02
106	GO:0003682: chromatin binding	4.12E-02
107	GO:0050660: flavin adenine dinucleotide binding	4.51E-02
108	GO:0004842: ubiquitin-protein transferase activity	4.59E-02
109	GO:0008422: beta-glucosidase activity	4.62E-02
110	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.62E-02
111	GO:0051539: 4 iron, 4 sulfur cluster binding	4.76E-02
112	GO:0050661: NADP binding	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.47E-07
2	GO:0005911: cell-cell junction	2.36E-04
3	GO:0016442: RISC complex	2.36E-04
4	GO:0030688: preribosome, small subunit precursor	2.36E-04
5	GO:0010494: cytoplasmic stress granule	3.18E-04
6	GO:0005829: cytosol	5.68E-04
7	GO:0005768: endosome	5.89E-04
8	GO:0009506: plasmodesma	1.63E-03
9	GO:0005794: Golgi apparatus	1.96E-03
10	GO:0010008: endosome membrane	1.96E-03
11	GO:0005746: mitochondrial respiratory chain	2.07E-03
12	GO:0016020: membrane	2.90E-03
13	GO:0032580: Golgi cisterna membrane	2.99E-03
14	GO:0030173: integral component of Golgi membrane	3.06E-03
15	GO:0005743: mitochondrial inner membrane	3.75E-03
16	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.79E-03
17	GO:0005802: trans-Golgi network	5.90E-03
18	GO:0005737: cytoplasm	6.52E-03
19	GO:0000159: protein phosphatase type 2A complex	7.50E-03
20	GO:0071013: catalytic step 2 spliceosome	7.50E-03
21	GO:0048471: perinuclear region of cytoplasm	7.50E-03
22	GO:0016021: integral component of membrane	8.72E-03
23	GO:0019013: viral nucleocapsid	9.02E-03
24	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	9.34E-03
25	GO:0005795: Golgi stack	1.06E-02
26	GO:0043234: protein complex	1.15E-02
27	GO:0005741: mitochondrial outer membrane	1.42E-02
28	GO:0030136: clathrin-coated vesicle	1.80E-02
29	GO:0005871: kinesin complex	1.80E-02
30	GO:0009524: phragmoplast	1.93E-02
31	GO:0005783: endoplasmic reticulum	2.04E-02
32	GO:0005730: nucleolus	2.19E-02
33	GO:0000145: exocyst	2.45E-02
34	GO:0071944: cell periphery	2.56E-02
35	GO:0005778: peroxisomal membrane	2.80E-02
36	GO:0005774: vacuolar membrane	2.88E-02
37	GO:0000932: P-body	3.04E-02
38	GO:0005788: endoplasmic reticulum lumen	3.16E-02
39	GO:0005667: transcription factor complex	3.29E-02
40	GO:0019005: SCF ubiquitin ligase complex	3.67E-02
41	GO:0000786: nucleosome	4.20E-02