GO Enrichment Analysis of Co-expressed Genes with
AT3G09180
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger | 0.00E+00 |
| 2 | GO:0006511: ubiquitin-dependent protein catabolic process | 6.56E-22 |
| 3 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.07E-08 |
| 4 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.31E-07 |
| 5 | GO:0030163: protein catabolic process | 2.79E-07 |
| 6 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.61E-06 |
| 7 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.03E-05 |
| 8 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 5.79E-05 |
| 9 | GO:0006144: purine nucleobase metabolic process | 5.79E-05 |
| 10 | GO:0006434: seryl-tRNA aminoacylation | 5.79E-05 |
| 11 | GO:0019628: urate catabolic process | 5.79E-05 |
| 12 | GO:0051788: response to misfolded protein | 1.41E-04 |
| 13 | GO:0009156: ribonucleoside monophosphate biosynthetic process | 1.41E-04 |
| 14 | GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway | 2.40E-04 |
| 15 | GO:0009647: skotomorphogenesis | 3.49E-04 |
| 16 | GO:0001676: long-chain fatty acid metabolic process | 3.49E-04 |
| 17 | GO:0046513: ceramide biosynthetic process | 3.49E-04 |
| 18 | GO:0006571: tyrosine biosynthetic process | 3.49E-04 |
| 19 | GO:0009165: nucleotide biosynthetic process | 4.66E-04 |
| 20 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 5.92E-04 |
| 21 | GO:0045116: protein neddylation | 5.92E-04 |
| 22 | GO:0045040: protein import into mitochondrial outer membrane | 7.24E-04 |
| 23 | GO:0001731: formation of translation preinitiation complex | 7.24E-04 |
| 24 | GO:0043248: proteasome assembly | 7.24E-04 |
| 25 | GO:0009094: L-phenylalanine biosynthetic process | 8.63E-04 |
| 26 | GO:0000245: spliceosomal complex assembly | 8.63E-04 |
| 27 | GO:0009554: megasporogenesis | 8.63E-04 |
| 28 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 8.63E-04 |
| 29 | GO:0007275: multicellular organism development | 9.59E-04 |
| 30 | GO:0048528: post-embryonic root development | 1.01E-03 |
| 31 | GO:0000338: protein deneddylation | 1.01E-03 |
| 32 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.16E-03 |
| 33 | GO:0006644: phospholipid metabolic process | 1.16E-03 |
| 34 | GO:0007186: G-protein coupled receptor signaling pathway | 1.32E-03 |
| 35 | GO:0046685: response to arsenic-containing substance | 1.48E-03 |
| 36 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.65E-03 |
| 37 | GO:0010449: root meristem growth | 1.65E-03 |
| 38 | GO:0072593: reactive oxygen species metabolic process | 2.02E-03 |
| 39 | GO:0048229: gametophyte development | 2.02E-03 |
| 40 | GO:0015031: protein transport | 2.21E-03 |
| 41 | GO:0006790: sulfur compound metabolic process | 2.21E-03 |
| 42 | GO:0010102: lateral root morphogenesis | 2.41E-03 |
| 43 | GO:0009785: blue light signaling pathway | 2.41E-03 |
| 44 | GO:0006626: protein targeting to mitochondrion | 2.41E-03 |
| 45 | GO:0006446: regulation of translational initiation | 2.62E-03 |
| 46 | GO:0046854: phosphatidylinositol phosphorylation | 2.82E-03 |
| 47 | GO:0007031: peroxisome organization | 2.82E-03 |
| 48 | GO:0006289: nucleotide-excision repair | 3.26E-03 |
| 49 | GO:0009116: nucleoside metabolic process | 3.26E-03 |
| 50 | GO:0015992: proton transport | 3.72E-03 |
| 51 | GO:0071215: cellular response to abscisic acid stimulus | 4.20E-03 |
| 52 | GO:0042127: regulation of cell proliferation | 4.44E-03 |
| 53 | GO:0051028: mRNA transport | 4.69E-03 |
| 54 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 4.69E-03 |
| 55 | GO:0015991: ATP hydrolysis coupled proton transport | 4.95E-03 |
| 56 | GO:0008360: regulation of cell shape | 5.21E-03 |
| 57 | GO:0006662: glycerol ether metabolic process | 5.21E-03 |
| 58 | GO:0048825: cotyledon development | 5.75E-03 |
| 59 | GO:0009749: response to glucose | 5.75E-03 |
| 60 | GO:0008654: phospholipid biosynthetic process | 5.75E-03 |
| 61 | GO:0009556: microsporogenesis | 5.75E-03 |
| 62 | GO:0010183: pollen tube guidance | 5.75E-03 |
| 63 | GO:0010193: response to ozone | 6.02E-03 |
| 64 | GO:0006914: autophagy | 6.88E-03 |
| 65 | GO:0016579: protein deubiquitination | 7.47E-03 |
| 66 | GO:0010027: thylakoid membrane organization | 7.78E-03 |
| 67 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 8.08E-03 |
| 68 | GO:0016049: cell growth | 9.03E-03 |
| 69 | GO:0008219: cell death | 9.36E-03 |
| 70 | GO:0009817: defense response to fungus, incompatible interaction | 9.36E-03 |
| 71 | GO:0006499: N-terminal protein myristoylation | 1.00E-02 |
| 72 | GO:0010119: regulation of stomatal movement | 1.04E-02 |
| 73 | GO:0010043: response to zinc ion | 1.04E-02 |
| 74 | GO:0045087: innate immune response | 1.11E-02 |
| 75 | GO:0034599: cellular response to oxidative stress | 1.14E-02 |
| 76 | GO:0006631: fatty acid metabolic process | 1.25E-02 |
| 77 | GO:0009640: photomorphogenesis | 1.32E-02 |
| 78 | GO:0008283: cell proliferation | 1.32E-02 |
| 79 | GO:0009965: leaf morphogenesis | 1.44E-02 |
| 80 | GO:0006812: cation transport | 1.55E-02 |
| 81 | GO:0009846: pollen germination | 1.55E-02 |
| 82 | GO:0009585: red, far-red light phototransduction | 1.63E-02 |
| 83 | GO:0009736: cytokinin-activated signaling pathway | 1.63E-02 |
| 84 | GO:0009740: gibberellic acid mediated signaling pathway | 2.01E-02 |
| 85 | GO:0009553: embryo sac development | 2.05E-02 |
| 86 | GO:0018105: peptidyl-serine phosphorylation | 2.14E-02 |
| 87 | GO:0009742: brassinosteroid mediated signaling pathway | 2.19E-02 |
| 88 | GO:0009793: embryo development ending in seed dormancy | 2.26E-02 |
| 89 | GO:0009845: seed germination | 2.60E-02 |
| 90 | GO:0006413: translational initiation | 2.94E-02 |
| 91 | GO:0009860: pollen tube growth | 4.45E-02 |
| 92 | GO:0048366: leaf development | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016247: channel regulator activity | 0.00E+00 |
| 2 | GO:0005095: GTPase inhibitor activity | 0.00E+00 |
| 3 | GO:0004846: urate oxidase activity | 0.00E+00 |
| 4 | GO:0016881: acid-amino acid ligase activity | 0.00E+00 |
| 5 | GO:0055105: ubiquitin-protein transferase inhibitor activity | 0.00E+00 |
| 6 | GO:0004298: threonine-type endopeptidase activity | 6.99E-20 |
| 7 | GO:0008233: peptidase activity | 1.23E-13 |
| 8 | GO:0036402: proteasome-activating ATPase activity | 3.07E-08 |
| 9 | GO:0017025: TBP-class protein binding | 1.88E-06 |
| 10 | GO:0016887: ATPase activity | 5.06E-05 |
| 11 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 5.79E-05 |
| 12 | GO:0050200: plasmalogen synthase activity | 5.79E-05 |
| 13 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 5.79E-05 |
| 14 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 5.79E-05 |
| 15 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 5.79E-05 |
| 16 | GO:0004828: serine-tRNA ligase activity | 5.79E-05 |
| 17 | GO:0050291: sphingosine N-acyltransferase activity | 1.41E-04 |
| 18 | GO:0019781: NEDD8 activating enzyme activity | 1.41E-04 |
| 19 | GO:0031683: G-protein beta/gamma-subunit complex binding | 2.40E-04 |
| 20 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 2.40E-04 |
| 21 | GO:0001664: G-protein coupled receptor binding | 2.40E-04 |
| 22 | GO:0004749: ribose phosphate diphosphokinase activity | 3.49E-04 |
| 23 | GO:0070628: proteasome binding | 4.66E-04 |
| 24 | GO:0015368: calcium:cation antiporter activity | 4.66E-04 |
| 25 | GO:0015369: calcium:proton antiporter activity | 4.66E-04 |
| 26 | GO:0004040: amidase activity | 5.92E-04 |
| 27 | GO:0008641: small protein activating enzyme activity | 5.92E-04 |
| 28 | GO:0031369: translation initiation factor binding | 7.24E-04 |
| 29 | GO:0031593: polyubiquitin binding | 7.24E-04 |
| 30 | GO:0102391: decanoate--CoA ligase activity | 8.63E-04 |
| 31 | GO:0051020: GTPase binding | 8.63E-04 |
| 32 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 8.63E-04 |
| 33 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.01E-03 |
| 34 | GO:0015491: cation:cation antiporter activity | 1.16E-03 |
| 35 | GO:0015078: hydrogen ion transmembrane transporter activity | 1.32E-03 |
| 36 | GO:0045309: protein phosphorylated amino acid binding | 1.65E-03 |
| 37 | GO:0019904: protein domain specific binding | 2.02E-03 |
| 38 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 2.02E-03 |
| 39 | GO:0004175: endopeptidase activity | 2.62E-03 |
| 40 | GO:0003714: transcription corepressor activity | 3.26E-03 |
| 41 | GO:0043130: ubiquitin binding | 3.26E-03 |
| 42 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 3.72E-03 |
| 43 | GO:0047134: protein-disulfide reductase activity | 4.69E-03 |
| 44 | GO:0005524: ATP binding | 5.34E-03 |
| 45 | GO:0005515: protein binding | 5.34E-03 |
| 46 | GO:0004791: thioredoxin-disulfide reductase activity | 5.48E-03 |
| 47 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 6.59E-03 |
| 48 | GO:0003684: damaged DNA binding | 6.88E-03 |
| 49 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 9.36E-03 |
| 50 | GO:0003746: translation elongation factor activity | 1.11E-02 |
| 51 | GO:0005198: structural molecule activity | 1.44E-02 |
| 52 | GO:0000166: nucleotide binding | 1.85E-02 |
| 53 | GO:0015035: protein disulfide oxidoreductase activity | 2.14E-02 |
| 54 | GO:0016746: transferase activity, transferring acyl groups | 2.14E-02 |
| 55 | GO:0008017: microtubule binding | 3.20E-02 |
| 56 | GO:0003743: translation initiation factor activity | 3.46E-02 |
| 57 | GO:0000287: magnesium ion binding | 4.17E-02 |
| 58 | GO:0046982: protein heterodimerization activity | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000502: proteasome complex | 1.30E-37 |
| 2 | GO:0005839: proteasome core complex | 6.99E-20 |
| 3 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.67E-11 |
| 4 | GO:0031595: nuclear proteasome complex | 2.48E-10 |
| 5 | GO:0005829: cytosol | 3.60E-10 |
| 6 | GO:0019773: proteasome core complex, alpha-subunit complex | 7.70E-10 |
| 7 | GO:0031597: cytosolic proteasome complex | 5.47E-08 |
| 8 | GO:0008540: proteasome regulatory particle, base subcomplex | 4.14E-07 |
| 9 | GO:0005737: cytoplasm | 1.09E-05 |
| 10 | GO:0005838: proteasome regulatory particle | 2.40E-04 |
| 11 | GO:0046861: glyoxysomal membrane | 2.40E-04 |
| 12 | GO:0033179: proton-transporting V-type ATPase, V0 domain | 4.66E-04 |
| 13 | GO:0000813: ESCRT I complex | 5.92E-04 |
| 14 | GO:0016282: eukaryotic 43S preinitiation complex | 7.24E-04 |
| 15 | GO:0033290: eukaryotic 48S preinitiation complex | 8.63E-04 |
| 16 | GO:0009506: plasmodesma | 8.83E-04 |
| 17 | GO:0031359: integral component of chloroplast outer membrane | 1.01E-03 |
| 18 | GO:0005634: nucleus | 1.12E-03 |
| 19 | GO:0000421: autophagosome membrane | 1.16E-03 |
| 20 | GO:0005742: mitochondrial outer membrane translocase complex | 1.32E-03 |
| 21 | GO:0009514: glyoxysome | 1.32E-03 |
| 22 | GO:0008180: COP9 signalosome | 1.48E-03 |
| 23 | GO:0005834: heterotrimeric G-protein complex | 1.90E-03 |
| 24 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.02E-03 |
| 25 | GO:0022626: cytosolic ribosome | 3.02E-03 |
| 26 | GO:0005769: early endosome | 3.04E-03 |
| 27 | GO:0009705: plant-type vacuole membrane | 3.68E-03 |
| 28 | GO:0005741: mitochondrial outer membrane | 3.72E-03 |
| 29 | GO:0031410: cytoplasmic vesicle | 3.95E-03 |
| 30 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 4.44E-03 |
| 31 | GO:0005643: nuclear pore | 9.36E-03 |
| 32 | GO:0090406: pollen tube | 1.32E-02 |
| 33 | GO:0005789: endoplasmic reticulum membrane | 1.34E-02 |
| 34 | GO:0005635: nuclear envelope | 1.71E-02 |
| 35 | GO:0005777: peroxisome | 2.12E-02 |
| 36 | GO:0005783: endoplasmic reticulum | 2.88E-02 |
| 37 | GO:0005886: plasma membrane | 3.96E-02 |
| 38 | GO:0005618: cell wall | 4.40E-02 |
| 39 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.51E-02 |
| 40 | GO:0005874: microtubule | 4.80E-02 |