Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G08690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0023052: signaling0.00E+00
3GO:1903647: negative regulation of chlorophyll catabolic process0.00E+00
4GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
5GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
6GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
7GO:0001881: receptor recycling0.00E+00
8GO:0006592: ornithine biosynthetic process0.00E+00
9GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
10GO:0006593: ornithine catabolic process0.00E+00
11GO:0070207: protein homotrimerization0.00E+00
12GO:0006511: ubiquitin-dependent protein catabolic process3.02E-08
13GO:0055114: oxidation-reduction process8.72E-07
14GO:0006412: translation2.35E-06
15GO:0051603: proteolysis involved in cellular protein catabolic process4.00E-06
16GO:0009853: photorespiration8.49E-06
17GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.60E-05
18GO:0008333: endosome to lysosome transport4.71E-05
19GO:0042254: ribosome biogenesis2.06E-04
20GO:0006914: autophagy2.30E-04
21GO:0043248: proteasome assembly3.65E-04
22GO:0006120: mitochondrial electron transport, NADH to ubiquinone4.87E-04
23GO:0045454: cell redox homeostasis5.06E-04
24GO:0015992: proton transport5.28E-04
25GO:0031539: positive regulation of anthocyanin metabolic process5.68E-04
26GO:0031468: nuclear envelope reassembly5.68E-04
27GO:0019544: arginine catabolic process to glutamate5.68E-04
28GO:0015798: myo-inositol transport5.68E-04
29GO:0046686: response to cadmium ion8.30E-04
30GO:0015991: ATP hydrolysis coupled proton transport9.04E-04
31GO:0022900: electron transport chain9.43E-04
32GO:0006662: glycerol ether metabolic process9.94E-04
33GO:0015986: ATP synthesis coupled proton transport1.09E-03
34GO:0006452: translational frameshifting1.22E-03
35GO:0019483: beta-alanine biosynthetic process1.22E-03
36GO:0009915: phloem sucrose loading1.22E-03
37GO:0006212: uracil catabolic process1.22E-03
38GO:0051788: response to misfolded protein1.22E-03
39GO:0045905: positive regulation of translational termination1.22E-03
40GO:0080026: response to indolebutyric acid1.22E-03
41GO:0045901: positive regulation of translational elongation1.22E-03
42GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.22E-03
43GO:0046939: nucleotide phosphorylation1.22E-03
44GO:0009651: response to salt stress1.47E-03
45GO:0051646: mitochondrion localization2.01E-03
46GO:0002181: cytoplasmic translation2.01E-03
47GO:0015940: pantothenate biosynthetic process2.01E-03
48GO:0045793: positive regulation of cell size2.01E-03
49GO:0034227: tRNA thio-modification2.01E-03
50GO:0044746: amino acid transmembrane export2.01E-03
51GO:0016925: protein sumoylation2.06E-03
52GO:0009735: response to cytokinin2.34E-03
53GO:0006807: nitrogen compound metabolic process2.34E-03
54GO:0006107: oxaloacetate metabolic process2.92E-03
55GO:0009647: skotomorphogenesis2.92E-03
56GO:1901332: negative regulation of lateral root development2.92E-03
57GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.92E-03
58GO:0006168: adenine salvage2.92E-03
59GO:0071786: endoplasmic reticulum tubular network organization2.92E-03
60GO:0009963: positive regulation of flavonoid biosynthetic process2.92E-03
61GO:0080024: indolebutyric acid metabolic process2.92E-03
62GO:0001676: long-chain fatty acid metabolic process2.92E-03
63GO:0032877: positive regulation of DNA endoreduplication2.92E-03
64GO:0046836: glycolipid transport2.92E-03
65GO:0006166: purine ribonucleoside salvage2.92E-03
66GO:0007030: Golgi organization2.97E-03
67GO:0006487: protein N-linked glycosylation3.68E-03
68GO:0010387: COP9 signalosome assembly3.93E-03
69GO:0010363: regulation of plant-type hypersensitive response3.93E-03
70GO:0032366: intracellular sterol transport3.93E-03
71GO:0051781: positive regulation of cell division3.93E-03
72GO:0034599: cellular response to oxidative stress4.19E-03
73GO:0010431: seed maturation4.47E-03
74GO:0006631: fatty acid metabolic process4.94E-03
75GO:0006564: L-serine biosynthetic process5.05E-03
76GO:0005513: detection of calcium ion5.05E-03
77GO:0097428: protein maturation by iron-sulfur cluster transfer5.05E-03
78GO:0044209: AMP salvage5.05E-03
79GO:0019722: calcium-mediated signaling5.81E-03
80GO:0006555: methionine metabolic process6.26E-03
81GO:0006086: acetyl-CoA biosynthetic process from pyruvate6.26E-03
82GO:0006574: valine catabolic process6.26E-03
83GO:0006561: proline biosynthetic process6.26E-03
84GO:0042147: retrograde transport, endosome to Golgi6.30E-03
85GO:0042631: cellular response to water deprivation6.82E-03
86GO:0009955: adaxial/abaxial pattern specification7.56E-03
87GO:0019509: L-methionine salvage from methylthioadenosine7.56E-03
88GO:1901001: negative regulation of response to salt stress7.56E-03
89GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response7.56E-03
90GO:0009612: response to mechanical stimulus7.56E-03
91GO:0010189: vitamin E biosynthetic process7.56E-03
92GO:0009554: megasporogenesis7.56E-03
93GO:0009648: photoperiodism7.56E-03
94GO:1900056: negative regulation of leaf senescence8.96E-03
95GO:0000338: protein deneddylation8.96E-03
96GO:0010044: response to aluminum ion8.96E-03
97GO:0032880: regulation of protein localization8.96E-03
98GO:0080027: response to herbivore8.96E-03
99GO:0048528: post-embryonic root development8.96E-03
100GO:0000302: response to reactive oxygen species9.10E-03
101GO:0010193: response to ozone9.10E-03
102GO:0006096: glycolytic process9.96E-03
103GO:0030163: protein catabolic process1.04E-02
104GO:0009690: cytokinin metabolic process1.04E-02
105GO:0009787: regulation of abscisic acid-activated signaling pathway1.04E-02
106GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.04E-02
107GO:0009642: response to light intensity1.04E-02
108GO:0006506: GPI anchor biosynthetic process1.04E-02
109GO:0000028: ribosomal small subunit assembly1.04E-02
110GO:0048658: anther wall tapetum development1.04E-02
111GO:0031540: regulation of anthocyanin biosynthetic process1.04E-02
112GO:0006102: isocitrate metabolic process1.04E-02
113GO:0006464: cellular protein modification process1.11E-02
114GO:0006002: fructose 6-phosphate metabolic process1.20E-02
115GO:0006526: arginine biosynthetic process1.20E-02
116GO:0043562: cellular response to nitrogen levels1.20E-02
117GO:0010099: regulation of photomorphogenesis1.20E-02
118GO:0009615: response to virus1.32E-02
119GO:0006979: response to oxidative stress1.33E-02
120GO:0046685: response to arsenic-containing substance1.36E-02
121GO:0009821: alkaloid biosynthetic process1.36E-02
122GO:0080144: amino acid homeostasis1.36E-02
123GO:0009245: lipid A biosynthetic process1.36E-02
124GO:0006754: ATP biosynthetic process1.36E-02
125GO:0098656: anion transmembrane transport1.36E-02
126GO:0006950: response to stress1.56E-02
127GO:0000103: sulfate assimilation1.71E-02
128GO:0006032: chitin catabolic process1.71E-02
129GO:0043069: negative regulation of programmed cell death1.71E-02
130GO:0009817: defense response to fungus, incompatible interaction1.73E-02
131GO:0006913: nucleocytoplasmic transport1.90E-02
132GO:0000272: polysaccharide catabolic process1.90E-02
133GO:0015770: sucrose transport1.90E-02
134GO:0030148: sphingolipid biosynthetic process1.90E-02
135GO:0009407: toxin catabolic process1.91E-02
136GO:0010043: response to zinc ion2.01E-02
137GO:0006820: anion transport2.09E-02
138GO:0002213: defense response to insect2.09E-02
139GO:0008361: regulation of cell size2.09E-02
140GO:0006626: protein targeting to mitochondrion2.29E-02
141GO:0010102: lateral root morphogenesis2.29E-02
142GO:0006108: malate metabolic process2.29E-02
143GO:0006006: glucose metabolic process2.29E-02
144GO:0006099: tricarboxylic acid cycle2.30E-02
145GO:0007034: vacuolar transport2.50E-02
146GO:0009266: response to temperature stimulus2.50E-02
147GO:0009901: anther dehiscence2.71E-02
148GO:0010053: root epidermal cell differentiation2.71E-02
149GO:0009640: photomorphogenesis2.84E-02
150GO:0009926: auxin polar transport2.84E-02
151GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.91E-02
152GO:0042753: positive regulation of circadian rhythm2.93E-02
153GO:0006636: unsaturated fatty acid biosynthetic process2.93E-02
154GO:0006071: glycerol metabolic process2.93E-02
155GO:0009116: nucleoside metabolic process3.15E-02
156GO:0009617: response to bacterium3.15E-02
157GO:0000027: ribosomal large subunit assembly3.15E-02
158GO:0006406: mRNA export from nucleus3.15E-02
159GO:0006289: nucleotide-excision repair3.15E-02
160GO:2000377: regulation of reactive oxygen species metabolic process3.15E-02
161GO:0006825: copper ion transport3.38E-02
162GO:0051302: regulation of cell division3.38E-02
163GO:0061077: chaperone-mediated protein folding3.62E-02
164GO:0051260: protein homooligomerization3.62E-02
165GO:0048511: rhythmic process3.62E-02
166GO:0009585: red, far-red light phototransduction3.82E-02
167GO:0010017: red or far-red light signaling pathway3.86E-02
168GO:0035428: hexose transmembrane transport3.86E-02
169GO:0007005: mitochondrion organization3.86E-02
170GO:0010089: xylem development4.36E-02
171GO:0080022: primary root development4.88E-02
172GO:0034220: ion transmembrane transport4.88E-02
173GO:0000413: protein peptidyl-prolyl isomerization4.88E-02
174GO:0010118: stomatal movement4.88E-02
175GO:0006606: protein import into nucleus4.88E-02
176GO:0009620: response to fungus4.95E-02
RankGO TermAdjusted P value
1GO:0003837: beta-ureidopropionase activity0.00E+00
2GO:0052873: FMN reductase (NADPH) activity0.00E+00
3GO:0050152: omega-amidase activity0.00E+00
4GO:0010176: homogentisate phytyltransferase activity0.00E+00
5GO:0003796: lysozyme activity0.00E+00
6GO:0008777: acetylornithine deacetylase activity0.00E+00
7GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
8GO:0008752: FMN reductase activity0.00E+00
9GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
10GO:0004298: threonine-type endopeptidase activity3.75E-19
11GO:0008233: peptidase activity6.09E-11
12GO:0003735: structural constituent of ribosome8.71E-10
13GO:0008121: ubiquinol-cytochrome-c reductase activity4.12E-07
14GO:0008137: NADH dehydrogenase (ubiquinone) activity1.23E-05
15GO:0004129: cytochrome-c oxidase activity1.50E-04
16GO:0004576: oligosaccharyl transferase activity1.71E-04
17GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.71E-04
18GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.60E-04
19GO:0031386: protein tag2.60E-04
20GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.68E-04
21GO:0047560: 3-dehydrosphinganine reductase activity5.68E-04
22GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity5.68E-04
23GO:0019786: Atg8-specific protease activity5.68E-04
24GO:0050897: cobalt ion binding5.96E-04
25GO:0015035: protein disulfide oxidoreductase activity6.06E-04
26GO:0047134: protein-disulfide reductase activity8.20E-04
27GO:0046933: proton-transporting ATP synthase activity, rotational mechanism9.94E-04
28GO:0004791: thioredoxin-disulfide reductase activity1.09E-03
29GO:0008805: carbon-monoxide oxygenase activity1.22E-03
30GO:0019779: Atg8 activating enzyme activity1.22E-03
31GO:0005366: myo-inositol:proton symporter activity1.22E-03
32GO:0008517: folic acid transporter activity1.22E-03
33GO:0004617: phosphoglycerate dehydrogenase activity1.22E-03
34GO:0045309: protein phosphorylated amino acid binding1.33E-03
35GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.53E-03
36GO:0019904: protein domain specific binding1.80E-03
37GO:0046961: proton-transporting ATPase activity, rotational mechanism1.80E-03
38GO:0008794: arsenate reductase (glutaredoxin) activity1.80E-03
39GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity2.01E-03
40GO:0016531: copper chaperone activity2.01E-03
41GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.01E-03
42GO:0004557: alpha-galactosidase activity2.01E-03
43GO:0016805: dipeptidase activity2.01E-03
44GO:0052692: raffinose alpha-galactosidase activity2.01E-03
45GO:0008430: selenium binding2.01E-03
46GO:0004089: carbonate dehydratase activity2.34E-03
47GO:0015186: L-glutamine transmembrane transporter activity2.92E-03
48GO:0019201: nucleotide kinase activity2.92E-03
49GO:0003999: adenine phosphoribosyltransferase activity2.92E-03
50GO:0004449: isocitrate dehydrogenase (NAD+) activity2.92E-03
51GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.92E-03
52GO:0017089: glycolipid transporter activity2.92E-03
53GO:0043130: ubiquitin binding3.68E-03
54GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.93E-03
55GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.93E-03
56GO:0070628: proteasome binding3.93E-03
57GO:0019776: Atg8 ligase activity3.93E-03
58GO:0004659: prenyltransferase activity3.93E-03
59GO:0015368: calcium:cation antiporter activity3.93E-03
60GO:0010011: auxin binding3.93E-03
61GO:0051861: glycolipid binding3.93E-03
62GO:0015369: calcium:proton antiporter activity3.93E-03
63GO:0005496: steroid binding5.05E-03
64GO:0004040: amidase activity5.05E-03
65GO:0004364: glutathione transferase activity5.21E-03
66GO:0031593: polyubiquitin binding6.26E-03
67GO:0031177: phosphopantetheine binding6.26E-03
68GO:0051117: ATPase binding6.26E-03
69GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity6.26E-03
70GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.68E-03
71GO:0051287: NAD binding7.00E-03
72GO:0004017: adenylate kinase activity7.56E-03
73GO:0000035: acyl binding7.56E-03
74GO:0004602: glutathione peroxidase activity7.56E-03
75GO:0102391: decanoate--CoA ligase activity7.56E-03
76GO:0004656: procollagen-proline 4-dioxygenase activity7.56E-03
77GO:0008113: peptide-methionine (S)-S-oxide reductase activity7.56E-03
78GO:0051920: peroxiredoxin activity7.56E-03
79GO:0008235: metalloexopeptidase activity8.96E-03
80GO:0042162: telomeric DNA binding8.96E-03
81GO:0003872: 6-phosphofructokinase activity8.96E-03
82GO:0043295: glutathione binding8.96E-03
83GO:0004467: long-chain fatty acid-CoA ligase activity8.96E-03
84GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.04E-02
85GO:0043022: ribosome binding1.04E-02
86GO:0015491: cation:cation antiporter activity1.04E-02
87GO:0004869: cysteine-type endopeptidase inhibitor activity1.04E-02
88GO:0015288: porin activity1.04E-02
89GO:0016209: antioxidant activity1.04E-02
90GO:0009055: electron carrier activity1.07E-02
91GO:0008308: voltage-gated anion channel activity1.20E-02
92GO:0004601: peroxidase activity1.23E-02
93GO:0003729: mRNA binding1.24E-02
94GO:0016788: hydrolase activity, acting on ester bonds1.27E-02
95GO:0008889: glycerophosphodiester phosphodiesterase activity1.36E-02
96GO:0047617: acyl-CoA hydrolase activity1.54E-02
97GO:0016844: strictosidine synthase activity1.54E-02
98GO:0019843: rRNA binding1.68E-02
99GO:0004568: chitinase activity1.71E-02
100GO:0008515: sucrose transmembrane transporter activity1.90E-02
101GO:0008327: methyl-CpG binding1.90E-02
102GO:0004177: aminopeptidase activity1.90E-02
103GO:0008559: xenobiotic-transporting ATPase activity1.90E-02
104GO:0030145: manganese ion binding2.01E-02
105GO:0003746: translation elongation factor activity2.20E-02
106GO:0003697: single-stranded DNA binding2.20E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity2.29E-02
108GO:0016491: oxidoreductase activity2.32E-02
109GO:0051539: 4 iron, 4 sulfur cluster binding2.51E-02
110GO:0008017: microtubule binding2.68E-02
111GO:0008061: chitin binding2.71E-02
112GO:0003712: transcription cofactor activity2.71E-02
113GO:0051119: sugar transmembrane transporter activity2.71E-02
114GO:0005528: FK506 binding3.15E-02
115GO:0051536: iron-sulfur cluster binding3.15E-02
116GO:0031418: L-ascorbic acid binding3.15E-02
117GO:0020037: heme binding3.36E-02
118GO:0043424: protein histidine kinase binding3.38E-02
119GO:0004540: ribonuclease activity3.62E-02
120GO:0005507: copper ion binding4.55E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0005839: proteasome core complex3.75E-19
3GO:0000502: proteasome complex9.17E-19
4GO:0005774: vacuolar membrane2.48E-12
5GO:0005747: mitochondrial respiratory chain complex I3.70E-12
6GO:0005773: vacuole2.61E-10
7GO:0005750: mitochondrial respiratory chain complex III8.05E-09
8GO:0022625: cytosolic large ribosomal subunit1.49E-08
9GO:0019773: proteasome core complex, alpha-subunit complex1.57E-08
10GO:0022626: cytosolic ribosome2.64E-08
11GO:0045271: respiratory chain complex I3.70E-08
12GO:0005829: cytosol4.89E-08
13GO:0005840: ribosome8.11E-08
14GO:0005753: mitochondrial proton-transporting ATP synthase complex5.73E-07
15GO:0000421: autophagosome membrane7.35E-07
16GO:0005758: mitochondrial intermembrane space1.06E-06
17GO:0031966: mitochondrial membrane3.30E-05
18GO:0031410: cytoplasmic vesicle5.17E-05
19GO:0005783: endoplasmic reticulum5.64E-05
20GO:0000325: plant-type vacuole7.90E-05
21GO:0016471: vacuolar proton-transporting V-type ATPase complex1.71E-04
22GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.71E-04
23GO:0008250: oligosaccharyltransferase complex2.60E-04
24GO:0016020: membrane2.97E-04
25GO:0005771: multivesicular body3.65E-04
26GO:0030904: retromer complex3.65E-04
27GO:0005737: cytoplasm4.59E-04
28GO:0009510: plasmodesmatal desmotubule5.68E-04
29GO:0015934: large ribosomal subunit5.96E-04
30GO:0022627: cytosolic small ribosomal subunit6.18E-04
31GO:0005739: mitochondrion8.83E-04
32GO:0005697: telomerase holoenzyme complex1.22E-03
33GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain1.22E-03
34GO:0005777: peroxisome1.26E-03
35GO:0005759: mitochondrial matrix1.28E-03
36GO:0005794: Golgi apparatus1.30E-03
37GO:0008541: proteasome regulatory particle, lid subcomplex1.80E-03
38GO:0046861: glyoxysomal membrane2.01E-03
39GO:0005788: endoplasmic reticulum lumen2.23E-03
40GO:0033180: proton-transporting V-type ATPase, V1 domain2.92E-03
41GO:0071782: endoplasmic reticulum tubular network2.92E-03
42GO:1990726: Lsm1-7-Pat1 complex2.92E-03
43GO:0005775: vacuolar lumen2.92E-03
44GO:0005776: autophagosome3.93E-03
45GO:0070469: respiratory chain4.06E-03
46GO:0005945: 6-phosphofructokinase complex5.05E-03
47GO:0055035: plastid thylakoid membrane5.05E-03
48GO:0005746: mitochondrial respiratory chain5.05E-03
49GO:0009507: chloroplast6.84E-03
50GO:0009536: plastid7.92E-03
51GO:0005635: nuclear envelope8.77E-03
52GO:0005688: U6 snRNP1.04E-02
53GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane1.04E-02
54GO:0045273: respiratory chain complex II1.04E-02
55GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.04E-02
56GO:0046540: U4/U6 x U5 tri-snRNP complex1.20E-02
57GO:0046930: pore complex1.20E-02
58GO:0009514: glyoxysome1.20E-02
59GO:0005618: cell wall1.23E-02
60GO:0005789: endoplasmic reticulum membrane1.32E-02
61GO:0008180: COP9 signalosome1.36E-02
62GO:0031090: organelle membrane1.36E-02
63GO:0005732: small nucleolar ribonucleoprotein complex1.41E-02
64GO:0005886: plasma membrane1.52E-02
65GO:0071011: precatalytic spliceosome1.54E-02
66GO:0005874: microtubule1.62E-02
67GO:0005740: mitochondrial envelope1.71E-02
68GO:0071013: catalytic step 2 spliceosome1.90E-02
69GO:0005665: DNA-directed RNA polymerase II, core complex2.09E-02
70GO:0009508: plastid chromosome2.29E-02
71GO:0031902: late endosome membrane2.62E-02
72GO:0000419: DNA-directed RNA polymerase V complex2.93E-02
73GO:0005741: mitochondrial outer membrane3.62E-02
<
Gene type



Gene DE type